Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0002072

Physical Location & Seq

Genomic Coordinates Reverse (-)

28994759 .. 28996798

Gene Structure 2040 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG268400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGAACACCAAGTACAAGACCTGTCTTTGGAGCTCACGCTGGGTGGACCATACACTGCGGAACCATACCAAGCAGACACAGAAGGGTCAGCAGATTTGATCCGGATCCGTGCAAGCTTTACGGGATTCAGGGTGTATTCAGTAAATCAAGAGGTGGAGGAAACCAAATATAAGGTTTCTACACGATTGACACTATGCAGTTCCTTTGATCCTTGGGTTTTTAAGAAACCGTTGGGCCACCTCGATGCCACGAAGAGGCTGTCGTTGCGTAAACCATGGGTGGATGCCGAGGTGCTCCCCAACCTCAATGTGTTAGCTAAGCATCAGATGCAGCAAGGTCATCGAACGTGGGTGCGGGTCTTTGACAAAGACACTCGATCACTCAATGAGGTAGAGTTGAAGAAGGAGGAGAGTTTCGTATTTCGTGATTTGTGGGTACATGATTTTGTGAATAGGCGGAAGCTGGTTGCACAGGACACAGTGGGTCTCTACTGGGAAACTACCGAGCAAAGATTTGTGTTTTCTGTTCTAAAAAGGATACCCAGAGTTCCTAAGACAACTAGCAATAGGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

191

Amino Acids

22.34

Weight (kDa)

9.18

Isoelectric Point (pI)

25.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78635 AT1G78640 AT2G33720
fragaria_vesca	FvH4_3g33791 FvH4_3g37630
malus_domestica	MD14G1106900.v1.1
prunus_persica	Prupe.5G092200_v2.0.a1 Prupe.5G102200_v2.0.a1 Prupe.5G102300_v2.0.a1 Prupe.5G102400_v2.0.a1 Prupe.5G102500_v2.0.a1
pyrus_communis	pycom05g30850 pycom05g30870 pycom14g10060
rosa_chinensis	RchiOBHm_Chr2g0116441
rosa_laevigata	RLG00000003924 RLG00000018270 RLG00000035460 RLG00000035470
rosa_multiflora	Rmu_sc0000338.1_g000013 Rmu_sc0000689.1_g000016 Rmu_sc0001164.1_g000007 Rmu_sc0004191.1_g000056 Rmu_sc0019528.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019310 Rroxscaffold_1G00019370 Rroxscaffold_5G00379640
rosa_rugosa	Rorug05G0141100 Rorug05G0339700
rosa_samantha	Rh2AG262200 Rh2CG268400 Rh2CG268500 Rh2DG270400 Rh5AG402000 Rh5BG019500 Rh5BG414100 Rh5CG438600 Rh5DG428700 Rh7AG166100 Rh7BG168200 Rh7CG174500 Rh7DG167800
rosa_wichuraiana	Rw5G037840 Rw7G014460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	102
AciI	CCGC	3 cut(s)	59, 355, 457
AclWI	GGATC	4 cut(s)	94, 100, 113, 203
AfaI	GTAC	2 cut(s)	15, 438
AfiI	CCNNNNNNNGG	2 cut(s)	28, 255
AgsI	TTSAA	1 cut(s)	400
AluBI	AGCT	4 cut(s)	34, 117, 317, 463
AluI	AGCT	4 cut(s)	34, 117, 317, 463
Alw21I	GWGCWC	2 cut(s)	36, 297
Alw26I	GTCTC	1 cut(s)	491
AlwI	GGATC	4 cut(s)	94, 100, 113, 203
Aor13HI	TCCGGA	1 cut(s)	102
AoxI	GGCC	1 cut(s)	235
ApeKI	GCWGC	1 cut(s)	331
ArsI	GACNNNNNNTTYG	2 cut(s)	245, 277
AspS9I	GGNCC	2 cut(s)	47, 235
AvaII	GGWCC	1 cut(s)	47
BamHI	GGATCC	1 cut(s)	105
BanII	GRGCYC	1 cut(s)	36
Bbv12I	GWGCWC	2 cut(s)	36, 297
BbvI	GCAGC	1 cut(s)	343
BcgI	CGANNNNNNTGC	2 cut(s)	323, 357
BciVI	GTATCC	1 cut(s)	531
BcoDI	GTCTC	1 cut(s)	491
BfaI	CTAG	1 cut(s)	561
BfuI	GTATCC	1 cut(s)	531
BisI	GCNGC	1 cut(s)	332
BlpI	GCTNAGC	1 cut(s)	318
BlsI	GCNGC	1 cut(s)	333
Bme18I	GGWCC	1 cut(s)	47
BmgT120I	GGNCC	2 cut(s)	47, 235
BmiI	GGNNCC	2 cut(s)	63, 107
BmrI	ACTGGG	1 cut(s)	502
BmsI	GCATC	4 cut(s)	235, 274, 318, 331
BmuI	ACTGGG	1 cut(s)	502
Bpu1102I	GCTNAGC	1 cut(s)	318
BsaBI	GATNNNNATC	1 cut(s)	104
BsaI	GGTCTC	1 cut(s)	491
BsaJI	CCNNGG	3 cut(s)	212, 275, 288
BsaWI	WCCGGW	1 cut(s)	102
Bsc4I	CCNNNNNNNGG	2 cut(s)	28, 255
Bse1I	ACTGG	1 cut(s)	497
Bse8I	GATNNNNATC	1 cut(s)	104
BseAI	TCCGGA	1 cut(s)	102
BseDI	CCNNGG	3 cut(s)	212, 275, 288
BseGI	GGATG	1 cut(s)	289
BseJI	GATNNNNATC	1 cut(s)	104
BseLI	CCNNNNNNNGG	2 cut(s)	28, 255
BseNI	ACTGG	1 cut(s)	497
BseRI	GAGGAG	1 cut(s)	422
BseXI	GCAGC	1 cut(s)	343
BseYI	CCCAGC	1 cut(s)	40
BshFI	GGCC	1 cut(s)	237
BsiHKAI	GWGCWC	2 cut(s)	36, 297
BsiSI	CCGG	1 cut(s)	103
BslI	CCNNNNNNNGG	2 cut(s)	28, 255
BsmAI	GTCTC	1 cut(s)	491
BsnI	GGCC	1 cut(s)	237
Bso31I	GGTCTC	1 cut(s)	491
Bsp1286I	GDGCHC	2 cut(s)	36, 297
Bsp13I	TCCGGA	1 cut(s)	102
Bsp143I	GATC	4 cut(s)	99, 105, 208, 377
Bsp1720I	GCTNAGC	1 cut(s)	318
Bsp19I	CCATGG	1 cut(s)	275
BspACI	CCGC	3 cut(s)	59, 355, 457
BspANI	GGCC	1 cut(s)	237
BspEI	TCCGGA	1 cut(s)	102
BspLI	GGNNCC	2 cut(s)	63, 107
BspPI	GGATC	4 cut(s)	94, 100, 113, 203
BspTNI	GGTCTC	1 cut(s)	491
BsrI	ACTGG	1 cut(s)	497
BssECI	CCNNGG	3 cut(s)	212, 275, 288
BssMI	GATC	4 cut(s)	99, 105, 208, 377
BssT1I	CCWWGG	2 cut(s)	212, 275
Bst4CI	ACNGT	2 cut(s)	231, 481
Bst6I	CTCTTC	1 cut(s)	248
BstAPI	GCANNNNNTGC	1 cut(s)	328
BstC8I	GCNNGC	1 cut(s)	115
BstDEI	CTNAG	2 cut(s)	318, 552
BstDSI	CCRYGG	1 cut(s)	275
BstF5I	GGATG	1 cut(s)	289
BstKTI	GATC	4 cut(s)	102, 108, 211, 380
BstMAI	GTCTC	1 cut(s)	491
BstMBI	GATC	4 cut(s)	99, 105, 208, 377
BstMWI	GCNNNNNNNGC	2 cut(s)	265, 328
BstV1I	GCAGC	1 cut(s)	343
BstX2I	RGATCY	1 cut(s)	105
BstYI	RGATCY	1 cut(s)	105
BsuI	GTATCC	1 cut(s)	531
BsuRI	GGCC	1 cut(s)	237
BtgI	CCRYGG	1 cut(s)	275
BtsCI	GGATG	1 cut(s)	289
BtsI	GCAGTG	1 cut(s)	54
BtsIMutI	CAGTG	2 cut(s)	54, 486
Cac8I	GCNNGC	1 cut(s)	115
Cfr13I	GGNCC	2 cut(s)	47, 235
Csp6I	GTAC	2 cut(s)	14, 437
CviAII	CATG	2 cut(s)	276, 440
CviJI	RGCY	6 cut(s)	34, 117, 237, 259, 317, 463
CviKI_1	RGCY	6 cut(s)	34, 117, 237, 259, 317, 463
CviQI	GTAC	2 cut(s)	14, 437
DdeI	CTNAG	2 cut(s)	318, 552
DpnI	GATC	4 cut(s)	101, 107, 210, 379
DpnII	GATC	4 cut(s)	99, 105, 208, 377
Eam1104I	CTCTTC	1 cut(s)	248
EarI	CTCTTC	1 cut(s)	248
EciI	GGCGGA	1 cut(s)	472
Ecl136II	GAGCTC	1 cut(s)	34
Eco130I	CCWWGG	2 cut(s)	212, 275
Eco24I	GRGCYC	1 cut(s)	36
Eco31I	GGTCTC	1 cut(s)	491
Eco47I	GGWCC	1 cut(s)	47
Eco53kI	GAGCTC	1 cut(s)	34
EcoICRI	GAGCTC	1 cut(s)	34
EcoT14I	CCWWGG	2 cut(s)	212, 275
EcoT38I	GRGCYC	1 cut(s)	36
ErhI	CCWWGG	2 cut(s)	212, 275
FaeI	CATG	2 cut(s)	279, 443
FaiI	YATR	6 cut(s)	52, 67, 171, 196, 277, 441
FatI	CATG	2 cut(s)	275, 439
FauI	CCCGC	1 cut(s)	348
Fnu4HI	GCNGC	1 cut(s)	332
FokI	GGATG	1 cut(s)	296
FriOI	GRGCYC	1 cut(s)	36
Fsp4HI	GCNGC	1 cut(s)	332
FspBI	CTAG	1 cut(s)	561
GluI	GCNGC	1 cut(s)	332
GsaI	CCCAGC	1 cut(s)	44
HaeIII	GGCC	1 cut(s)	237
HapII	CCGG	1 cut(s)	103
Hin1II	CATG	2 cut(s)	279, 443
HindIII	AAGCTT	1 cut(s)	115
HinfI	GANTC	1 cut(s)	126
HpaII	CCGG	1 cut(s)	103
Hpy166II	GTNNAC	2 cut(s)	47, 272
Hpy188I	TCNGA	1 cut(s)	327
Hpy188III	TCNNGA	4 cut(s)	103, 149, 425, 573
Hpy8I	GTNNAC	2 cut(s)	47, 272
HpyAV	CCTTC	2 cut(s)	77, 397
HpyCH4III	ACNGT	2 cut(s)	231, 481
HpyCH4IV	ACGT	1 cut(s)	347
HpyCH4V	TGCA	4 cut(s)	113, 198, 331, 470
HpyF10VI	GCNNNNNNNGC	2 cut(s)	265, 328
HpyF3I	CTNAG	2 cut(s)	318, 552
HpySE526I	ACGT	1 cut(s)	347
Hsp92II	CATG	2 cut(s)	279, 443
Kpn2I	TCCGGA	1 cut(s)	102
Kzo9I	GATC	4 cut(s)	99, 105, 208, 377
LmnI	GCTCC	2 cut(s)	31, 300
LpnPI	CCDG	8 cut(s)	26, 35, 115, 116, 449, 458, 478, 556
Lsp1109I	GCAGC	1 cut(s)	343
LweI	GCATC	4 cut(s)	235, 274, 318, 331
MaeI	CTAG	1 cut(s)	561
MaeII	ACGT	1 cut(s)	347
MalI	GATC	4 cut(s)	101, 107, 210, 379
MboI	GATC	4 cut(s)	99, 105, 208, 377
MboII	GAAGA	2 cut(s)	265, 412
MflI	RGATCY	1 cut(s)	105
MhlI	GDGCHC	2 cut(s)	36, 297
MnlI	CCTC	8 cut(s)	145, 151, 249, 251, 283, 314, 382, 400
MroI	TCCGGA	1 cut(s)	102
MseI	TTAA	1 cut(s)	222
MslI	CAYNNNNRTG	1 cut(s)	243
MspI	CCGG	1 cut(s)	103
MwoI	GCNNNNNNNGC	2 cut(s)	265, 328
NcoI	CCATGG	1 cut(s)	275
NdeII	GATC	4 cut(s)	99, 105, 208, 377
NlaIII	CATG	2 cut(s)	279, 443
NlaIV	GGNNCC	2 cut(s)	63, 107
NmeAIII	GCCGAG	1 cut(s)	313
PfeI	GAWTC	1 cut(s)	126
PkrI	GCNGC	1 cut(s)	333
Psp124BI	GAGCTC	1 cut(s)	36
PspFI	CCCAGC	1 cut(s)	40
PspN4I	GGNNCC	2 cut(s)	63, 107
PspPI	GGNCC	2 cut(s)	47, 235
PsrI	GAACNNNNNNTAC	1 cut(s)	29
PsuI	RGATCY	1 cut(s)	105
RsaI	GTAC	2 cut(s)	15, 438
RsaNI	GTAC	2 cut(s)	14, 437
RseI	CAYNNNNRTG	1 cut(s)	243
SacI	GAGCTC	1 cut(s)	36
SaqAI	TTAA	1 cut(s)	222
SatI	GCNGC	1 cut(s)	332
Sau3AI	GATC	4 cut(s)	99, 105, 208, 377
Sau96I	GGNCC	2 cut(s)	47, 235
SduI	GDGCHC	2 cut(s)	36, 297
SfaNI	GCATC	4 cut(s)	235, 274, 318, 331
SinI	GGWCC	1 cut(s)	47
SmiMI	CAYNNNNRTG	1 cut(s)	243
SsiI	CCGC	3 cut(s)	59, 355, 457
SspMI	CTAG	1 cut(s)	561
SstI	GAGCTC	1 cut(s)	36
StyI	CCWWGG	2 cut(s)	212, 275
TaaI	ACNGT	2 cut(s)	231, 481
TaiI	ACGT	1 cut(s)	350
TaqI	TCGA	3 cut(s)	243, 343, 376
TatI	WGTACW	1 cut(s)	13
TfiI	GAWTC	1 cut(s)	126
Tru1I	TTAA	1 cut(s)	222
Tru9I	TTAA	1 cut(s)	222
TscAI	CASTG	2 cut(s)	61, 486
TseI	GCWGC	1 cut(s)	331
TspGWI	ACGGA	1 cut(s)	98
TspRI	CASTG	2 cut(s)	61, 486
VpaK11BI	GGWCC	1 cut(s)	47
XspI	CTAG	1 cut(s)	561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.