Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0002072

Physical Location & Seq

Genomic Coordinates Forward (+)

14209652 .. 14210251

Gene Structure 600 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG166100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGTCATCTTTGCCTCCAACTAAATCGTTCCCAGAAGACCATATTTCAGCACCATCGACACCTTTGTTCTATGAATTCCTTCCATCTTCATCTTCAAGTACCATGGTGGATGAGTTGACCAAGCATAGAAATGAGGTCACAGCTGCCAAGATTGCTAATCGTTTGAGATTTTATGCTCGTAAGCAGTTAATGAAAGAGCATTGTTGGGGGGTTTCAACTCAGTTGTGTTTGTCTAACCCTTGGATACTCGAGAAAATGCTGACCAGGAATGATCTCTTGAAATTGAGCAGGCTGCTGTTGCCATCATACCTGATAAACAACCCTGACTTCCCTTTCTTGGGTGACAAGTTTCCCCATAGGGTCAAGTGTCGGGGGTTAAATGTGACTGTCTATGACTCGGACACAAAAACCAACCATCGATTTGTTCTGAAACAACGGGGCTCCTCCACTAGCTATGTCTTGATCGGAAAGCGGAGAGAGGATTTTGTGAAGAGGAGAAAGTTGAAAGATATATGGGGACAAAATGGGACTGTATTGGGACTGTCGCAGGTTCAAGTTCATCTTTTCTGCTCTCAGACGGGTAACCTGGATAGTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

199

Amino Acids

22.8

Weight (kDa)

9.78

Isoelectric Point (pI)

49.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78635 AT1G78640 AT2G33720
fragaria_vesca	FvH4_3g33791 FvH4_3g37630
malus_domestica	MD14G1106900.v1.1
prunus_persica	Prupe.5G092200_v2.0.a1 Prupe.5G102200_v2.0.a1 Prupe.5G102300_v2.0.a1 Prupe.5G102400_v2.0.a1 Prupe.5G102500_v2.0.a1
pyrus_communis	pycom05g30850 pycom05g30870 pycom14g10060
rosa_chinensis	RchiOBHm_Chr2g0116441
rosa_laevigata	RLG00000003924 RLG00000018270 RLG00000035460 RLG00000035470
rosa_multiflora	Rmu_sc0000338.1_g000013 Rmu_sc0000689.1_g000016 Rmu_sc0001164.1_g000007 Rmu_sc0004191.1_g000056 Rmu_sc0019528.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019310 Rroxscaffold_1G00019370 Rroxscaffold_5G00379640
rosa_rugosa	Rorug05G0141100 Rorug05G0339700
rosa_samantha	Rh2AG262200 Rh2CG268400 Rh2CG268500 Rh2DG270400 Rh5AG402000 Rh5BG019500 Rh5BG414100 Rh5CG438600 Rh5DG428700 Rh7AG166100 Rh7BG168200 Rh7CG174500 Rh7DG167800
rosa_wichuraiana	Rw5G037840 Rw7G014460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	538
AciI	CCGC	1 cut(s)	472
AcsI	RAATTY	1 cut(s)	74
AfaI	GTAC	1 cut(s)	100
AfiI	CCNNNNNNNGG	2 cut(s)	337, 338
AgsI	TTSAA	5 cut(s)	96, 216, 280, 505, 554
AjnI	CCWGG	2 cut(s)	263, 585
AluBI	AGCT	2 cut(s)	143, 453
AluI	AGCT	2 cut(s)	143, 453
Ama87I	CYCGRG	1 cut(s)	248
ApeKI	GCWGC	2 cut(s)	143, 292
ApoI	RAATTY	1 cut(s)	74
Asp700I	GAANNNNTTC	1 cut(s)	78
AsuHPI	GGTGA	1 cut(s)	353
AvaI	CYCGRG	1 cut(s)	248
BanII	GRGCYC	1 cut(s)	443
BbsI	GAAGAC	1 cut(s)	42
BbvI	GCAGC	2 cut(s)	130, 279
BccI	CCATC	4 cut(s)	61, 91, 310, 423
BciT130I	CCWGG	2 cut(s)	265, 587
BciVI	GTATCC	1 cut(s)	237
BfaI	CTAG	1 cut(s)	450
BfuAI	ACCTGC	1 cut(s)	538
BfuI	GTATCC	1 cut(s)	237
BisI	GCNGC	2 cut(s)	144, 293
BlsI	GCNGC	2 cut(s)	145, 294
Bme1390I	CCNGG	2 cut(s)	265, 587
BmeT110I	CYCGRG	1 cut(s)	248
BmiI	GGNNCC	1 cut(s)	442
BmrFI	CCNGG	2 cut(s)	265, 587
BpiI	GAAGAC	1 cut(s)	42
Bsa29I	ATCGAT	1 cut(s)	418
BsaJI	CCNNGG	2 cut(s)	102, 239
Bsc4I	CCNNNNNNNGG	2 cut(s)	337, 338
BseBI	CCWGG	2 cut(s)	265, 587
BseCI	ATCGAT	1 cut(s)	418
BseDI	CCNNGG	2 cut(s)	102, 239
BseGI	GGATG	1 cut(s)	115
BseLI	CCNNNNNNNGG	2 cut(s)	337, 338
BseMII	CTCAG	2 cut(s)	233, 587
BseRI	GAGGAG	2 cut(s)	433, 508
BseXI	GCAGC	2 cut(s)	130, 279
BshVI	ATCGAT	1 cut(s)	418
BsiHKCI	CYCGRG	1 cut(s)	248
BslFI	GGGAC	3 cut(s)	531, 541, 552
BslI	CCNNNNNNNGG	2 cut(s)	337, 338
BsmFI	GGGAC	3 cut(s)	531, 541, 552
BsoBI	CYCGRG	1 cut(s)	248
Bsp1286I	GDGCHC	1 cut(s)	443
Bsp143I	GATC	2 cut(s)	271, 462
Bsp19I	CCATGG	1 cut(s)	102
BspACI	CCGC	1 cut(s)	472
BspCNI	CTCAG	2 cut(s)	232, 586
BspDI	ATCGAT	1 cut(s)	418
BspLI	GGNNCC	1 cut(s)	442
BspMI	ACCTGC	1 cut(s)	538
BssECI	CCNNGG	2 cut(s)	102, 239
BssMI	GATC	2 cut(s)	271, 462
BssT1I	CCWWGG	2 cut(s)	102, 239
Bst2UI	CCWGG	2 cut(s)	265, 587
Bst4CI	ACNGT	3 cut(s)	388, 532, 543
Bst6I	CTCTTC	1 cut(s)	485
BstC8I	GCNNGC	1 cut(s)	290
BstDEI	CTNAG	2 cut(s)	219, 573
BstDSI	CCRYGG	1 cut(s)	102
BstEII	GGTNACC	1 cut(s)	581
BstF5I	GGATG	1 cut(s)	115
BstKTI	GATC	2 cut(s)	274, 465
BstMBI	GATC	2 cut(s)	271, 462
BstMWI	GCNNNNNNNGC	2 cut(s)	152, 298
BstNI	CCWGG	2 cut(s)	265, 587
BstPI	GGTNACC	1 cut(s)	581
BstSCI	CCNGG	2 cut(s)	263, 585
BstV1I	GCAGC	2 cut(s)	130, 279
BstV2I	GAAGAC	1 cut(s)	42
Bsu15I	ATCGAT	1 cut(s)	418
BsuI	GTATCC	1 cut(s)	237
BsuTUI	ATCGAT	1 cut(s)	418
BtgI	CCRYGG	1 cut(s)	102
BtsCI	GGATG	1 cut(s)	115
BveI	ACCTGC	1 cut(s)	538
Cac8I	GCNNGC	1 cut(s)	290
ClaI	ATCGAT	1 cut(s)	418
Csp6I	GTAC	1 cut(s)	99
CviAII	CATG	1 cut(s)	103
CviJI	RGCY	4 cut(s)	143, 292, 441, 453
CviKI_1	RGCY	4 cut(s)	143, 292, 441, 453
CviQI	GTAC	1 cut(s)	99
DdeI	CTNAG	2 cut(s)	219, 573
DpnI	GATC	2 cut(s)	273, 464
DpnII	GATC	2 cut(s)	271, 462
Eam1104I	CTCTTC	1 cut(s)	485
EarI	CTCTTC	1 cut(s)	485
Eco130I	CCWWGG	2 cut(s)	102, 239
Eco24I	GRGCYC	1 cut(s)	443
Eco88I	CYCGRG	1 cut(s)	248
Eco91I	GGTNACC	1 cut(s)	581
EcoO65I	GGTNACC	1 cut(s)	581
EcoRI	GAATTC	1 cut(s)	74
EcoRII	CCWGG	2 cut(s)	263, 585
EcoT14I	CCWWGG	2 cut(s)	102, 239
EcoT38I	GRGCYC	1 cut(s)	443
ErhI	CCWWGG	2 cut(s)	102, 239
FaeI	CATG	1 cut(s)	106
FalI	AAGNNNNNCTT	2 cut(s)	546, 578
FaqI	GGGAC	3 cut(s)	531, 541, 552
FatI	CATG	1 cut(s)	102
Fnu4HI	GCNGC	2 cut(s)	144, 293
FokI	GGATG	1 cut(s)	122
FriOI	GRGCYC	1 cut(s)	443
Fsp4HI	GCNGC	2 cut(s)	144, 293
FspBI	CTAG	1 cut(s)	450
GluI	GCNGC	2 cut(s)	144, 293
Hin1II	CATG	1 cut(s)	106
HincII	GTYRAC	1 cut(s)	117
HindII	GTYRAC	1 cut(s)	117
HinfI	GANTC	1 cut(s)	395
HphI	GGTGA	1 cut(s)	353
Hpy166II	GTNNAC	1 cut(s)	117
Hpy188I	TCNGA	4 cut(s)	400, 429, 467, 576
Hpy188III	TCNNGA	3 cut(s)	250, 277, 460
Hpy8I	GTNNAC	1 cut(s)	117
HpyAV	CCTTC	1 cut(s)	89
HpyCH4III	ACNGT	3 cut(s)	388, 532, 543
HpyF10VI	GCNNNNNNNGC	2 cut(s)	152, 298
HpyF3I	CTNAG	2 cut(s)	219, 573
Hsp92II	CATG	1 cut(s)	106
Kzo9I	GATC	2 cut(s)	271, 462
LmnI	GCTCC	1 cut(s)	446
LpnPI	CCDG	8 cut(s)	45, 250, 274, 277, 323, 336, 533, 572
Lsp1109I	GCAGC	2 cut(s)	130, 279
MaeI	CTAG	1 cut(s)	450
MaeIII	GTNAC	4 cut(s)	136, 341, 382, 581
MalI	GATC	2 cut(s)	273, 464
MboI	GATC	2 cut(s)	271, 462
MboII	GAAGA	4 cut(s)	47, 78, 84, 502
MhlI	GDGCHC	1 cut(s)	443
MluCI	AATT	2 cut(s)	74, 281
MlyI	GAGTC	1 cut(s)	389
MmeI	TCCRAC	1 cut(s)	41
MnlI	CCTC	5 cut(s)	24, 127, 454, 472, 486
MroXI	GAANNNNTTC	1 cut(s)	78
MseI	TTAA	2 cut(s)	188, 377
MslI	CAYNNNNRTG	1 cut(s)	129
MspA1I	CMGCKG	1 cut(s)	143
MspR9I	CCNGG	2 cut(s)	265, 587
MvaI	CCWGG	2 cut(s)	265, 587
MwoI	GCNNNNNNNGC	2 cut(s)	152, 298
NcoI	CCATGG	1 cut(s)	102
NdeII	GATC	2 cut(s)	271, 462
NlaIII	CATG	1 cut(s)	106
NlaIV	GGNNCC	1 cut(s)	442
NmuCI	GTSAC	3 cut(s)	136, 341, 382
PaeR7I	CTCGAG	1 cut(s)	248
PdmI	GAANNNNTTC	1 cut(s)	78
PkrI	GCNGC	2 cut(s)	145, 294
PleI	GAGTC	1 cut(s)	389
PpsI	GAGTC	1 cut(s)	389
Psp6I	CCWGG	2 cut(s)	263, 585
PspEI	GGTNACC	1 cut(s)	581
PspGI	CCWGG	2 cut(s)	263, 585
PspN4I	GGNNCC	1 cut(s)	442
PvuII	CAGCTG	1 cut(s)	143
RsaI	GTAC	1 cut(s)	100
RsaNI	GTAC	1 cut(s)	99
RseI	CAYNNNNRTG	1 cut(s)	129
SaqAI	TTAA	2 cut(s)	188, 377
SatI	GCNGC	2 cut(s)	144, 293
Sau3AI	GATC	2 cut(s)	271, 462
SchI	GAGTC	1 cut(s)	389
ScrFI	CCNGG	2 cut(s)	265, 587
SduI	GDGCHC	1 cut(s)	443
SetI	ASST	7 cut(s)	64, 138, 145, 312, 455, 552, 588
Sfr274I	CTCGAG	1 cut(s)	248
SlaI	CTCGAG	1 cut(s)	248
SmiMI	CAYNNNNRTG	1 cut(s)	129
SmlI	CTYRAG	1 cut(s)	248
SmoI	CTYRAG	1 cut(s)	248
Sse9I	AATT	2 cut(s)	74, 281
SsiI	CCGC	1 cut(s)	472
SspMI	CTAG	1 cut(s)	450
StyD4I	CCNGG	2 cut(s)	263, 585
StyI	CCWWGG	2 cut(s)	102, 239
TaaI	ACNGT	3 cut(s)	388, 532, 543
TaqI	TCGA	3 cut(s)	56, 249, 418
TasI	AATT	2 cut(s)	74, 281
Tru1I	TTAA	2 cut(s)	188, 377
Tru9I	TTAA	2 cut(s)	188, 377
TseFI	GTSAC	3 cut(s)	136, 341, 382
TseI	GCWGC	2 cut(s)	143, 292
Tsp45I	GTSAC	3 cut(s)	136, 341, 382
TspDTI	ATGAA	4 cut(s)	78, 87, 206, 548
XapI	RAATTY	1 cut(s)	74
XhoI	CTCGAG	1 cut(s)	248
XmnI	GAANNNNTTC	1 cut(s)	78
XspI	CTAG	1 cut(s)	450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.