Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0002072

Physical Location & Seq

Genomic Coordinates Forward (+)

10967179 .. 10968370

Gene Structure 1192 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G102500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGAGGACGATTATGAAACCTCAAAAATGCTAGCCCTAACCCTTAGCCTTCTTAATACTAACCCAGAGCTAGACCAAGTTTCCACTGCTCTCACTTTGTGTGACCCAACTTGGAATTACGACACAAATCAGAGCAAAGCAGAGGAATTAGACCCTGCTACTCACAATGTGCCCACATTTCCTCGTAATCCGAACCACGAGAAAATATCGGGTACGAATGATACGAACAAAGAGTTAGTAAAGAAGAAAAGAAAGCTAGTAGTGCTGGGACCTAGGCCGAGTCCCAAGCCTCGGAGGCCTTGGCCCATCAGGAAGATTCTGAAGGCAAGCGACCTCGGAAACTCCTCAAGGCTGCTGGTTCCAAAAGACTCCGCCACGAACCATTTTCTGCGTTACTTGGATGACAAGTTTGTCCAAAGGGTTGAGAGTGACGAGGGATTGGGAGTTACAGTTCAAGATTACGACACAGGCACAAGACATCAGTTGACTTTCAAGTTTTGGAGCTCGGCAAAGAGTTACATTCTCAATGGAGAGTGGAGAGGGATGTTTGTGCAGAGGAGAGGCTTGAAAGAGAAGGATGAAATTGGGCTTTATTGGGATGCTTCCAGAGCCATGTTCATGTTTTCTCTCCTTCAACGGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

215

Amino Acids

24.63

Weight (kDa)

9.08

Isoelectric Point (pI)

33.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78635 AT1G78640 AT2G33720
fragaria_vesca	FvH4_3g33791 FvH4_3g37630
malus_domestica	MD14G1106900.v1.1
prunus_persica	Prupe.5G092200_v2.0.a1 Prupe.5G102200_v2.0.a1 Prupe.5G102300_v2.0.a1 Prupe.5G102400_v2.0.a1 Prupe.5G102500_v2.0.a1
pyrus_communis	pycom05g30850 pycom05g30870 pycom14g10060
rosa_chinensis	RchiOBHm_Chr2g0116441
rosa_laevigata	RLG00000003924 RLG00000018270 RLG00000035460 RLG00000035470
rosa_multiflora	Rmu_sc0000338.1_g000013 Rmu_sc0000689.1_g000016 Rmu_sc0001164.1_g000007 Rmu_sc0004191.1_g000056 Rmu_sc0019528.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019310 Rroxscaffold_1G00019370 Rroxscaffold_5G00379640
rosa_rugosa	Rorug05G0141100 Rorug05G0339700
rosa_samantha	Rh2AG262200 Rh2CG268400 Rh2CG268500 Rh2DG270400 Rh5AG402000 Rh5BG019500 Rh5BG414100 Rh5CG438600 Rh5DG428700 Rh7AG166100 Rh7BG168200 Rh7CG174500 Rh7DG167800
rosa_wichuraiana	Rw5G037840 Rw7G014460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	410
AciI	CCGC	1 cut(s)	372
AcuI	CTGAAG	1 cut(s)	341
AdeI	CACNNNGTG	2 cut(s)	99, 169
AfaI	GTAC	1 cut(s)	214
AfiI	CCNNNNNNNGG	2 cut(s)	291, 637
AgsI	TTSAA	4 cut(s)	455, 493, 568, 635
AloI	GAACNNNNNNTCC	2 cut(s)	435, 467
AluBI	AGCT	3 cut(s)	70, 256, 504
AluI	AGCT	3 cut(s)	70, 256, 504
Alw21I	GWGCWC	1 cut(s)	506
AoxI	GGCC	3 cut(s)	275, 296, 302
ApeKI	GCWGC	1 cut(s)	352
AspA2I	CCTAGG	1 cut(s)	272
AspS9I	GGNCC	2 cut(s)	269, 303
AsuNHI	GCTAGC	1 cut(s)	31
AvaII	GGWCC	1 cut(s)	269
AvrII	CCTAGG	1 cut(s)	272
BaeGI	GKGCMC	1 cut(s)	174
BanII	GRGCYC	1 cut(s)	506
BauI	CACGAG	1 cut(s)	197
Bbv12I	GWGCWC	1 cut(s)	506
BbvI	GCAGC	1 cut(s)	339
BccI	CCATC	1 cut(s)	314
BfaI	CTAG	4 cut(s)	32, 71, 257, 273
BglI	GCCNNNNNGGC	1 cut(s)	295
BisI	GCNGC	1 cut(s)	353
BlnI	CCTAGG	1 cut(s)	272
BlsI	GCNGC	1 cut(s)	354
Bme18I	GGWCC	1 cut(s)	269
BmgT120I	GGNCC	2 cut(s)	269, 303
BmiI	GGNNCC	2 cut(s)	270, 360
BmsI	GCATC	1 cut(s)	589
BmtI	GCTAGC	1 cut(s)	35
Bpu10I	CCTNAGC	1 cut(s)	44
BpuEI	CTTGAG	1 cut(s)	331
BsaJI	CCNNGG	4 cut(s)	272, 290, 299, 334
BsaXI	ACNNNNNCTCC	2 cut(s)	435, 465
Bsc4I	CCNNNNNNNGG	2 cut(s)	291, 637
BseDI	CCNNGG	4 cut(s)	272, 290, 299, 334
BseGI	GGATG	4 cut(s)	406, 549, 583, 604
BseLI	CCNNNNNNNGG	2 cut(s)	291, 637
BseRI	GAGGAG	2 cut(s)	334, 571
BseSI	GKGCMC	1 cut(s)	174
BseXI	GCAGC	1 cut(s)	339
BseYI	CCCAGC	1 cut(s)	265
BsgI	GTGCAG	1 cut(s)	572
BshFI	GGCC	3 cut(s)	277, 298, 304
BsiHKAI	GWGCWC	1 cut(s)	506
BslFI	GGGAC	2 cut(s)	267, 282
BslI	CCNNNNNNNGG	2 cut(s)	291, 637
BsmFI	GGGAC	2 cut(s)	267, 282
BsnI	GGCC	3 cut(s)	277, 298, 304
Bsp1286I	GDGCHC	2 cut(s)	174, 506
BspACI	CCGC	1 cut(s)	372
BspANI	GGCC	3 cut(s)	277, 298, 304
BspLI	GGNNCC	2 cut(s)	270, 360
BspOI	GCTAGC	1 cut(s)	35
BssECI	CCNNGG	4 cut(s)	272, 290, 299, 334
BssSI	CACGAG	1 cut(s)	197
BssT1I	CCWWGG	2 cut(s)	272, 299
Bst2BI	CACGAG	1 cut(s)	197
Bst4CI	ACNGT	1 cut(s)	451
BstC8I	GCNNGC	2 cut(s)	33, 328
BstDEI	CTNAG	1 cut(s)	44
BstF5I	GGATG	4 cut(s)	406, 549, 583, 604
BstMWI	GCNNNNNNNGC	3 cut(s)	262, 295, 608
BstSLI	GKGCMC	1 cut(s)	174
BstV1I	GCAGC	1 cut(s)	339
BsuRI	GGCC	3 cut(s)	277, 298, 304
BtsCI	GGATG	4 cut(s)	406, 549, 583, 604
BtsI	GCAGTG	1 cut(s)	84
BtsIMutI	CAGTG	1 cut(s)	84
Cac8I	GCNNGC	2 cut(s)	33, 328
Cfr13I	GGNCC	2 cut(s)	269, 303
Csp6I	GTAC	1 cut(s)	213
CviAII	CATG	2 cut(s)	613, 619
CviQI	GTAC	1 cut(s)	213
DdeI	CTNAG	1 cut(s)	44
DraIII	CACNNNGTG	2 cut(s)	99, 169
DrdI	GACNNNNNNGTC	1 cut(s)	410
DseDI	GACNNNNNNGTC	1 cut(s)	410
EciI	GGCGGA	1 cut(s)	361
Ecl136II	GAGCTC	1 cut(s)	504
Eco130I	CCWWGG	2 cut(s)	272, 299
Eco147I	AGGCCT	1 cut(s)	298
Eco24I	GRGCYC	1 cut(s)	506
Eco47I	GGWCC	1 cut(s)	269
Eco53kI	GAGCTC	1 cut(s)	504
Eco57I	CTGAAG	1 cut(s)	341
EcoICRI	GAGCTC	1 cut(s)	504
EcoO109I	RGGNCCY	1 cut(s)	269
EcoT14I	CCWWGG	2 cut(s)	272, 299
EcoT38I	GRGCYC	1 cut(s)	506
ErhI	CCWWGG	2 cut(s)	272, 299
FaeI	CATG	2 cut(s)	616, 622
FaiI	YATR	3 cut(s)	15, 614, 620
FaqI	GGGAC	2 cut(s)	267, 282
FatI	CATG	2 cut(s)	612, 618
Fnu4HI	GCNGC	1 cut(s)	353
FokI	GGATG	4 cut(s)	413, 556, 590, 611
FriOI	GRGCYC	1 cut(s)	506
Fsp4HI	GCNGC	1 cut(s)	353
FspBI	CTAG	4 cut(s)	32, 71, 257, 273
GluI	GCNGC	1 cut(s)	353
GsaI	CCCAGC	1 cut(s)	269
HaeIII	GGCC	3 cut(s)	277, 298, 304
Hin1II	CATG	2 cut(s)	616, 622
HincII	GTYRAC	1 cut(s)	486
HindII	GTYRAC	1 cut(s)	486
HinfI	GANTC	3 cut(s)	280, 316, 368
Hpy166II	GTNNAC	1 cut(s)	486
Hpy188I	TCNGA	5 cut(s)	132, 192, 294, 321, 338
Hpy188III	TCNNGA	3 cut(s)	310, 455, 606
Hpy8I	GTNNAC	1 cut(s)	486
HpyAV	CCTTC	4 cut(s)	59, 316, 568, 641
HpyCH4III	ACNGT	1 cut(s)	451
HpyCH4V	TGCA	1 cut(s)	553
HpyF10VI	GCNNNNNNNGC	3 cut(s)	262, 295, 608
HpyF3I	CTNAG	1 cut(s)	44
Hsp92II	CATG	2 cut(s)	616, 622
LmnI	GCTCC	1 cut(s)	501
LpnPI	CCDG	7 cut(s)	78, 168, 251, 295, 341, 453, 619
Lsp1109I	GCAGC	1 cut(s)	339
LweI	GCATC	1 cut(s)	589
MaeI	CTAG	4 cut(s)	32, 71, 257, 273
MaeIII	GTNAC	5 cut(s)	101, 392, 428, 445, 515
MboII	GAAGA	2 cut(s)	256, 325
MhlI	GDGCHC	2 cut(s)	174, 506
MluCI	AATT	3 cut(s)	115, 146, 582
MlyI	GAGTC	2 cut(s)	289, 362
MseI	TTAA	1 cut(s)	54
MslI	CAYNNNNRTG	1 cut(s)	617
MwoI	GCNNNNNNNGC	3 cut(s)	262, 295, 608
NheI	GCTAGC	1 cut(s)	31
NlaIII	CATG	2 cut(s)	616, 622
NlaIV	GGNNCC	2 cut(s)	270, 360
NmeAIII	GCCGAG	2 cut(s)	303, 485
NmuCI	GTSAC	2 cut(s)	101, 428
PceI	AGGCCT	1 cut(s)	298
PcsI	WCGNNNNNNNCGW	1 cut(s)	221
PfeI	GAWTC	1 cut(s)	316
PkrI	GCNGC	1 cut(s)	354
PleI	GAGTC	2 cut(s)	288, 362
PpsI	GAGTC	2 cut(s)	288, 362
PpuMI	RGGWCCY	1 cut(s)	269
Psp124BI	GAGCTC	1 cut(s)	506
Psp5II	RGGWCCY	1 cut(s)	269
PspFI	CCCAGC	1 cut(s)	265
PspN4I	GGNNCC	2 cut(s)	270, 360
PspPI	GGNCC	2 cut(s)	269, 303
PspPPI	RGGWCCY	1 cut(s)	269
RsaI	GTAC	1 cut(s)	214
RsaNI	GTAC	1 cut(s)	213
RseI	CAYNNNNRTG	1 cut(s)	617
SacI	GAGCTC	1 cut(s)	506
SaqAI	TTAA	1 cut(s)	54
SatI	GCNGC	1 cut(s)	353
Sau96I	GGNCC	2 cut(s)	269, 303
SchI	GAGTC	2 cut(s)	289, 362
SduI	GDGCHC	2 cut(s)	174, 506
SetI	ASST	6 cut(s)	23, 72, 258, 274, 336, 506
SfaNI	GCATC	1 cut(s)	589
SinI	GGWCC	1 cut(s)	269
SmiMI	CAYNNNNRTG	1 cut(s)	617
SmlI	CTYRAG	1 cut(s)	346
SmoI	CTYRAG	1 cut(s)	346
Sse9I	AATT	3 cut(s)	115, 146, 582
SseBI	AGGCCT	1 cut(s)	298
SsiI	CCGC	1 cut(s)	372
SspMI	CTAG	4 cut(s)	32, 71, 257, 273
SstI	GAGCTC	1 cut(s)	506
StuI	AGGCCT	1 cut(s)	298
StyI	CCWWGG	2 cut(s)	272, 299
TaaI	ACNGT	1 cut(s)	451
TasI	AATT	3 cut(s)	115, 146, 582
TfiI	GAWTC	1 cut(s)	316
Tru1I	TTAA	1 cut(s)	54
Tru9I	TTAA	1 cut(s)	54
TscAI	CASTG	1 cut(s)	91
TseFI	GTSAC	2 cut(s)	101, 428
TseI	GCWGC	1 cut(s)	352
Tsp45I	GTSAC	2 cut(s)	101, 428
TspDTI	ATGAA	3 cut(s)	30, 594, 607
TspRI	CASTG	1 cut(s)	91
VpaK11BI	GGWCC	1 cut(s)	269
XmaJI	CCTAGG	1 cut(s)	272
XspI	CTAG	4 cut(s)	32, 71, 257, 273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.