Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0002072

Physical Location & Seq

Genomic Coordinates Reverse (-)

54331951 .. 54332560

Gene Structure 610 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003924

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGCTGACCAGGAGTGATCTCTTGAACTTGAGCAGGCTGCTGTTGCCATCATACCTGATAAACAACCCTGAATTCCCTTTCTTGGGTGAGAAGTTTCCCCATAGGGTTAAGTGTCAGGGGTTAAATGTGACTGTCTATGACTCGGACACAAGAACCAACCATCGATTTGTTCTGAAACAACGGGGCTCCTCCACTGGCTATGTCTTGATCGGAAAGTGGAGAGAGGATTTTGTGAAGAGGAGAAAGTTGAAAGATGGGGACGAAATCGGACTGTATTGGGACTGTCGCAGGTTCAAGTTCATCTTTTCTGTTCTCAGAGGGGTTCTTTTTGATGTTTCTAGAGTTCGATACATGGCTGTAGTTTGGGTATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

125

Amino Acids

14.75

Weight (kDa)

10.07

Isoelectric Point (pI)

39.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78635 AT1G78640 AT2G33720
fragaria_vesca	FvH4_3g33791 FvH4_3g37630
malus_domestica	MD14G1106900.v1.1
prunus_persica	Prupe.5G092200_v2.0.a1 Prupe.5G102200_v2.0.a1 Prupe.5G102300_v2.0.a1 Prupe.5G102400_v2.0.a1 Prupe.5G102500_v2.0.a1
pyrus_communis	pycom05g30850 pycom05g30870 pycom14g10060
rosa_chinensis	RchiOBHm_Chr2g0116441
rosa_laevigata	RLG00000003924 RLG00000018270 RLG00000035460 RLG00000035470
rosa_multiflora	Rmu_sc0000338.1_g000013 Rmu_sc0000689.1_g000016 Rmu_sc0001164.1_g000007 Rmu_sc0004191.1_g000056 Rmu_sc0019528.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019310 Rroxscaffold_1G00019370 Rroxscaffold_5G00379640
rosa_rugosa	Rorug05G0141100 Rorug05G0339700
rosa_samantha	Rh2AG262200 Rh2CG268400 Rh2CG268500 Rh2DG270400 Rh5AG402000 Rh5BG019500 Rh5BG414100 Rh5CG438600 Rh5DG428700 Rh7AG166100 Rh7BG168200 Rh7CG174500 Rh7DG167800
rosa_wichuraiana	Rw5G037840 Rw7G014460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	279
AcsI	RAATTY	1 cut(s)	71
AfiI	CCNNNNNNNGG	2 cut(s)	82, 83
AgsI	TTSAA	3 cut(s)	25, 250, 295
AjnI	CCWGG	1 cut(s)	8
ApeKI	GCWGC	1 cut(s)	37
ApoI	RAATTY	1 cut(s)	71
AsuHPI	GGTGA	1 cut(s)	98
BanII	GRGCYC	1 cut(s)	188
BbvI	GCAGC	1 cut(s)	24
BccI	CCATC	3 cut(s)	55, 168, 248
BciT130I	CCWGG	1 cut(s)	10
BfaI	CTAG	1 cut(s)	339
BfmI	CTRYAG	1 cut(s)	357
BfuAI	ACCTGC	1 cut(s)	279
BisI	GCNGC	1 cut(s)	38
BlsI	GCNGC	1 cut(s)	39
Bme1390I	CCNGG	1 cut(s)	10
BmiI	GGNNCC	1 cut(s)	187
BmrFI	CCNGG	1 cut(s)	10
BpuEI	CTTGAG	1 cut(s)	49
Bsa29I	ATCGAT	1 cut(s)	163
Bsc4I	CCNNNNNNNGG	2 cut(s)	82, 83
Bse1I	ACTGG	1 cut(s)	199
BseBI	CCWGG	1 cut(s)	10
BseCI	ATCGAT	1 cut(s)	163
BseLI	CCNNNNNNNGG	2 cut(s)	82, 83
BseMII	CTCAG	1 cut(s)	328
BseNI	ACTGG	1 cut(s)	199
BseRI	GAGGAG	2 cut(s)	178, 253
BseXI	GCAGC	1 cut(s)	24
BshVI	ATCGAT	1 cut(s)	163
BslFI	GGGAC	2 cut(s)	272, 293
BslI	CCNNNNNNNGG	2 cut(s)	82, 83
BsmFI	GGGAC	2 cut(s)	272, 293
Bsp1286I	GDGCHC	1 cut(s)	188
Bsp143I	GATC	2 cut(s)	16, 207
BspCNI	CTCAG	1 cut(s)	327
BspDI	ATCGAT	1 cut(s)	163
BspLI	GGNNCC	1 cut(s)	187
BspMI	ACCTGC	1 cut(s)	279
BsrI	ACTGG	1 cut(s)	199
BssMI	GATC	2 cut(s)	16, 207
Bst2UI	CCWGG	1 cut(s)	10
Bst4CI	ACNGT	3 cut(s)	133, 273, 284
Bst6I	CTCTTC	1 cut(s)	230
BstC8I	GCNNGC	1 cut(s)	35
BstDEI	CTNAG	1 cut(s)	314
BstKTI	GATC	2 cut(s)	19, 210
BstMBI	GATC	2 cut(s)	16, 207
BstMWI	GCNNNNNNNGC	1 cut(s)	43
BstNI	CCWGG	1 cut(s)	10
BstSCI	CCNGG	1 cut(s)	8
BstSFI	CTRYAG	1 cut(s)	357
BstV1I	GCAGC	1 cut(s)	24
Bsu15I	ATCGAT	1 cut(s)	163
BsuTUI	ATCGAT	1 cut(s)	163
BtsIMutI	CAGTG	1 cut(s)	192
BveI	ACCTGC	1 cut(s)	279
Cac8I	GCNNGC	1 cut(s)	35
ClaI	ATCGAT	1 cut(s)	163
CviAII	CATG	1 cut(s)	352
CviJI	RGCY	4 cut(s)	37, 186, 198, 356
CviKI_1	RGCY	4 cut(s)	37, 186, 198, 356
DdeI	CTNAG	1 cut(s)	314
DpnI	GATC	2 cut(s)	18, 209
DpnII	GATC	2 cut(s)	16, 207
Eam1104I	CTCTTC	1 cut(s)	230
EarI	CTCTTC	1 cut(s)	230
Eco24I	GRGCYC	1 cut(s)	188
EcoRI	GAATTC	1 cut(s)	71
EcoRII	CCWGG	1 cut(s)	8
EcoT38I	GRGCYC	1 cut(s)	188
FaeI	CATG	1 cut(s)	355
FaiI	YATR	5 cut(s)	52, 102, 138, 201, 353
FalI	AAGNNNNNCTT	2 cut(s)	287, 319
FaqI	GGGAC	2 cut(s)	272, 293
FatI	CATG	1 cut(s)	351
Fnu4HI	GCNGC	1 cut(s)	38
FriOI	GRGCYC	1 cut(s)	188
Fsp4HI	GCNGC	1 cut(s)	38
FspBI	CTAG	1 cut(s)	339
GluI	GCNGC	1 cut(s)	38
Hin1II	CATG	1 cut(s)	355
HinfI	GANTC	1 cut(s)	140
HphI	GGTGA	1 cut(s)	98
Hpy188I	TCNGA	5 cut(s)	145, 174, 212, 269, 317
Hpy188III	TCNNGA	3 cut(s)	22, 205, 339
HpyCH4III	ACNGT	3 cut(s)	133, 273, 284
HpyF10VI	GCNNNNNNNGC	1 cut(s)	43
HpyF3I	CTNAG	1 cut(s)	314
Hsp92II	CATG	1 cut(s)	355
Kzo9I	GATC	2 cut(s)	16, 207
LmnI	GCTCC	1 cut(s)	191
LpnPI	CCDG	7 cut(s)	19, 22, 68, 81, 101, 180, 274
Lsp1109I	GCAGC	1 cut(s)	24
MaeI	CTAG	1 cut(s)	339
MaeIII	GTNAC	1 cut(s)	127
MalI	GATC	2 cut(s)	18, 209
MboI	GATC	2 cut(s)	16, 207
MboII	GAAGA	1 cut(s)	247
MhlI	GDGCHC	1 cut(s)	188
MluCI	AATT	1 cut(s)	71
MlyI	GAGTC	1 cut(s)	134
MnlI	CCTC	4 cut(s)	199, 217, 231, 311
MseI	TTAA	2 cut(s)	108, 122
MspR9I	CCNGG	1 cut(s)	10
MvaI	CCWGG	1 cut(s)	10
MwoI	GCNNNNNNNGC	1 cut(s)	43
NdeII	GATC	2 cut(s)	16, 207
NlaIII	CATG	1 cut(s)	355
NlaIV	GGNNCC	1 cut(s)	187
NmuCI	GTSAC	1 cut(s)	127
PkrI	GCNGC	1 cut(s)	39
PleI	GAGTC	1 cut(s)	134
PpsI	GAGTC	1 cut(s)	134
Psp6I	CCWGG	1 cut(s)	8
PspGI	CCWGG	1 cut(s)	8
PspN4I	GGNNCC	1 cut(s)	187
SaqAI	TTAA	2 cut(s)	108, 122
SatI	GCNGC	1 cut(s)	38
Sau3AI	GATC	2 cut(s)	16, 207
SchI	GAGTC	1 cut(s)	134
ScrFI	CCNGG	1 cut(s)	10
SduI	GDGCHC	1 cut(s)	188
SetI	ASST	2 cut(s)	57, 293
SfcI	CTRYAG	1 cut(s)	357
SmlI	CTYRAG	1 cut(s)	28
SmoI	CTYRAG	1 cut(s)	28
Sse9I	AATT	1 cut(s)	71
SspMI	CTAG	1 cut(s)	339
StyD4I	CCNGG	1 cut(s)	8
TaaI	ACNGT	3 cut(s)	133, 273, 284
TaqI	TCGA	2 cut(s)	163, 346
TasI	AATT	1 cut(s)	71
Tru1I	TTAA	2 cut(s)	108, 122
Tru9I	TTAA	2 cut(s)	108, 122
TscAI	CASTG	1 cut(s)	199
TseFI	GTSAC	1 cut(s)	127
TseI	GCWGC	1 cut(s)	37
Tsp45I	GTSAC	1 cut(s)	127
TspDTI	ATGAA	1 cut(s)	289
TspRI	CASTG	1 cut(s)	199
XapI	RAATTY	1 cut(s)	71
XbaI	TCTAGA	1 cut(s)	338
XspI	CTAG	1 cut(s)	339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.