Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002072

Physical Location & Seq

Genomic Coordinates Reverse (-)

27768620 .. 27770421

Gene Structure 1802 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018270

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGATCGCTTCTCCTTGCAAAGAACCCAATTTCCGATCGAGCTCATCGAGGTGTTCGCCGCCTCATTTCCGCTCAAGAAATCGGAGAAAGGCACTGGGATGGAAGGTGAAGTACAAGACCTGTCTTTGGAGCCCACGCTGGGTGGACCCATGGTTTGCAGAACCATACCAGGCAAATACAGAAGAGTCAGAAGATTCGATACGGATTCGCACAAGCTTGATGGAGTTCAAAGCCTATCCGATGAAGCAAGAGCTCGAGGAGCGCAAGTATCACGTTTCTACAAGACTGAAGCTGTCTAGCTCGTTCGATCCATCGGTCTTCAAAAAGATGCTGGGTCACACTGATAAGGACCAGAGGTTGTGTCTGCGGAAGCCATTGGTGGATAAGGATGTGCTCCCAACCATGTCTCAATTAGCCAAGGACCAGATGGCGGAGGGTCATAGGACATGGGTCCAAGTATTTGATTCTGACACGCTCTCCACTCATGAGGTGGAATTTAAGAAAGAGGAAGGTTATGTTTTTCGTGGCTCGTGGGTGAAAGATTTTGTGGATAGGAAACACCTGGTTGAACAGAACGCTATTGGTCTTTACTGGCAGATGGACAAACAGAGATTTGTTTTATCTGTTCATGGAAGGGTACCGCGAATAGATTCTCAACCGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

222

Amino Acids

26.17

Weight (kDa)

9.39

Isoelectric Point (pI)

49.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78635 AT1G78640 AT2G33720
fragaria_vesca	FvH4_3g33791 FvH4_3g37630
malus_domestica	MD14G1106900.v1.1
prunus_persica	Prupe.5G092200_v2.0.a1 Prupe.5G102200_v2.0.a1 Prupe.5G102300_v2.0.a1 Prupe.5G102400_v2.0.a1 Prupe.5G102500_v2.0.a1
pyrus_communis	pycom05g30850 pycom05g30870 pycom14g10060
rosa_chinensis	RchiOBHm_Chr2g0116441
rosa_laevigata	RLG00000003924 RLG00000018270 RLG00000035460 RLG00000035470
rosa_multiflora	Rmu_sc0000338.1_g000013 Rmu_sc0000689.1_g000016 Rmu_sc0001164.1_g000007 Rmu_sc0004191.1_g000056 Rmu_sc0019528.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019310 Rroxscaffold_1G00019370 Rroxscaffold_5G00379640
rosa_rugosa	Rorug05G0141100 Rorug05G0339700
rosa_samantha	Rh2AG262200 Rh2CG268400 Rh2CG268500 Rh2DG270400 Rh5AG402000 Rh5BG019500 Rh5BG414100 Rh5CG438600 Rh5DG428700 Rh7AG166100 Rh7BG168200 Rh7CG174500 Rh7DG167800
rosa_wichuraiana	Rw5G037840 Rw7G014460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	637
AccB1I	GGYRCC	1 cut(s)	637
AccBSI	CCGCTC	1 cut(s)	72
AccII	CGCG	1 cut(s)	643
AciI	CCGC	5 cut(s)	59, 70, 367, 431, 641
AclWI	GGATC	1 cut(s)	302
AcsI	RAATTY	1 cut(s)	494
AcuI	CTGAAG	1 cut(s)	308
AfaI	GTAC	2 cut(s)	113, 639
AfiI	CCNNNNNNNGG	3 cut(s)	126, 139, 430
AgsI	TTSAA	3 cut(s)	229, 322, 569
AjnI	CCWGG	2 cut(s)	168, 561
AloI	GAACNNNNNNTCC	2 cut(s)	15, 47
AluBI	AGCT	5 cut(s)	42, 216, 253, 292, 300
AluI	AGCT	5 cut(s)	42, 216, 253, 292, 300
Alw21I	GWGCWC	3 cut(s)	44, 255, 396
Alw26I	GTCTC	1 cut(s)	411
AlwI	GGATC	1 cut(s)	302
Ama87I	CYCGRG	1 cut(s)	254
ApoI	RAATTY	1 cut(s)	494
ArsI	GACNNNNNNTTYG	2 cut(s)	137, 169
Asp700I	GAANNNNTTC	1 cut(s)	649
Asp718I	GGTACC	1 cut(s)	637
AspLEI	GCGC	1 cut(s)	264
AspS9I	GGNCC	4 cut(s)	145, 349, 421, 451
AsuHPI	GGTGA	2 cut(s)	118, 547
AvaI	CYCGRG	1 cut(s)	254
AvaII	GGWCC	4 cut(s)	145, 349, 421, 451
BanI	GGYRCC	1 cut(s)	637
BanII	GRGCYC	3 cut(s)	44, 134, 255
BarI	GAAGNNNNNNTAC	4 cut(s)	95, 127, 183, 215
BauI	CACGAG	1 cut(s)	529
BbsI	GAAGAC	1 cut(s)	310
Bbv12I	GWGCWC	3 cut(s)	44, 255, 396
BccI	CCATC	5 cut(s)	93, 214, 319, 421, 592
BciT130I	CCWGG	2 cut(s)	170, 563
BcoDI	GTCTC	1 cut(s)	411
BfaI	CTAG	1 cut(s)	297
BisI	GCNGC	1 cut(s)	59
BlsI	GCNGC	1 cut(s)	60
Bme1390I	CCNGG	2 cut(s)	170, 563
Bme18I	GGWCC	4 cut(s)	145, 349, 421, 451
BmeT110I	CYCGRG	1 cut(s)	254
BmgT120I	GGNCC	4 cut(s)	145, 349, 421, 451
BmiI	GGNNCC	4 cut(s)	131, 147, 452, 639
BmrFI	CCNGG	2 cut(s)	170, 563
BmrI	ACTGGG	1 cut(s)	104
BmsI	GCATC	1 cut(s)	318
BmuI	ACTGGG	1 cut(s)	104
BoxI	GACNNNNGTC	1 cut(s)	449
BpiI	GAAGAC	1 cut(s)	310
BpuEI	CTTGAG	1 cut(s)	58
BsaJI	CCNNGG	2 cut(s)	149, 417
BsaWI	WCCGGW	1 cut(s)	658
BsaXI	ACNNNNNCTCC	4 cut(s)	251, 281, 461, 491
Bsc4I	CCNNNNNNNGG	3 cut(s)	126, 139, 430
Bse1I	ACTGG	2 cut(s)	99, 596
BseBI	CCWGG	2 cut(s)	170, 563
BseDI	CCNNGG	2 cut(s)	149, 417
BseGI	GGATG	2 cut(s)	104, 394
BseLI	CCNNNNNNNGG	3 cut(s)	126, 139, 430
BseNI	ACTGG	2 cut(s)	99, 596
BseRI	GAGGAG	1 cut(s)	272
BseYI	CCCAGC	2 cut(s)	138, 331
Bsh1236I	CGCG	1 cut(s)	643
Bsh1285I	CGRYCG	1 cut(s)	38
BshNI	GGYRCC	1 cut(s)	637
BsiEI	CGRYCG	1 cut(s)	38
BsiHKAI	GWGCWC	3 cut(s)	44, 255, 396
BsiHKCI	CYCGRG	1 cut(s)	254
BsiSI	CCGG	1 cut(s)	659
BslI	CCNNNNNNNGG	3 cut(s)	126, 139, 430
BsmAI	GTCTC	1 cut(s)	411
BsoBI	CYCGRG	1 cut(s)	254
Bsp1286I	GDGCHC	4 cut(s)	44, 134, 255, 396
Bsp143I	GATC	3 cut(s)	3, 35, 307
Bsp19I	CCATGG	1 cut(s)	149
BspACI	CCGC	5 cut(s)	59, 70, 367, 431, 641
BspFNI	CGCG	1 cut(s)	643
BspHI	TCATGA	1 cut(s)	484
BspLI	GGNNCC	4 cut(s)	131, 147, 452, 639
BspPI	GGATC	1 cut(s)	302
BspT107I	GGYRCC	1 cut(s)	637
BsrBI	CCGCTC	1 cut(s)	72
BsrI	ACTGG	2 cut(s)	99, 596
BssECI	CCNNGG	2 cut(s)	149, 417
BssMI	GATC	3 cut(s)	3, 35, 307
BssSI	CACGAG	1 cut(s)	529
BssT1I	CCWWGG	2 cut(s)	149, 417
Bst2BI	CACGAG	1 cut(s)	529
Bst2UI	CCWGG	2 cut(s)	170, 563
Bst6I	CTCTTC	1 cut(s)	177
BstDSI	CCRYGG	1 cut(s)	149
BstF5I	GGATG	2 cut(s)	104, 394
BstFNI	CGCG	1 cut(s)	643
BstHHI	GCGC	1 cut(s)	264
BstKTI	GATC	3 cut(s)	6, 38, 310
BstMAI	GTCTC	1 cut(s)	411
BstMBI	GATC	3 cut(s)	3, 35, 307
BstMCI	CGRYCG	1 cut(s)	38
BstMWI	GCNNNNNNNGC	1 cut(s)	259
BstNI	CCWGG	2 cut(s)	170, 563
BstPAI	GACNNNNGTC	1 cut(s)	449
BstSCI	CCNGG	2 cut(s)	168, 561
BstUI	CGCG	1 cut(s)	643
BstV2I	GAAGAC	1 cut(s)	310
BtgI	CCRYGG	1 cut(s)	149
BtsCI	GGATG	2 cut(s)	104, 394
BtsIMutI	CAGTG	2 cut(s)	92, 339
CciI	TCATGA	1 cut(s)	484
CfoI	GCGC	1 cut(s)	264
Cfr13I	GGNCC	4 cut(s)	145, 349, 421, 451
CsiI	ACCWGGT	1 cut(s)	561
Csp6I	GTAC	2 cut(s)	112, 638
CviAII	CATG	5 cut(s)	150, 403, 447, 485, 629
CviQI	GTAC	2 cut(s)	112, 638
DpnI	GATC	3 cut(s)	5, 37, 309
DpnII	GATC	3 cut(s)	3, 35, 307
Eam1104I	CTCTTC	1 cut(s)	177
EarI	CTCTTC	1 cut(s)	177
EciI	GGCGGA	1 cut(s)	446
Ecl136II	GAGCTC	2 cut(s)	42, 253
Eco130I	CCWWGG	2 cut(s)	149, 417
Eco24I	GRGCYC	3 cut(s)	44, 134, 255
Eco47I	GGWCC	4 cut(s)	145, 349, 421, 451
Eco53kI	GAGCTC	2 cut(s)	42, 253
Eco57I	CTGAAG	1 cut(s)	308
Eco88I	CYCGRG	1 cut(s)	254
EcoICRI	GAGCTC	2 cut(s)	42, 253
EcoRII	CCWGG	2 cut(s)	168, 561
EcoT14I	CCWWGG	2 cut(s)	149, 417
EcoT38I	GRGCYC	3 cut(s)	44, 134, 255
ErhI	CCWWGG	2 cut(s)	149, 417
FaeI	CATG	5 cut(s)	153, 406, 450, 488, 632
FaiI	YATR	8 cut(s)	151, 166, 404, 441, 448, 486, 516, 630
FatI	CATG	5 cut(s)	149, 402, 446, 484, 628
Fnu4HI	GCNGC	1 cut(s)	59
FokI	GGATG	2 cut(s)	111, 401
FriOI	GRGCYC	3 cut(s)	44, 134, 255
Fsp4HI	GCNGC	1 cut(s)	59
FspBI	CTAG	1 cut(s)	297
GlaI	GCGC	1 cut(s)	263
GluI	GCNGC	1 cut(s)	59
GsaI	CCCAGC	2 cut(s)	142, 335
HapII	CCGG	1 cut(s)	659
HhaI	GCGC	1 cut(s)	264
Hin1II	CATG	5 cut(s)	153, 406, 450, 488, 632
Hin6I	GCGC	1 cut(s)	262
HinP1I	GCGC	1 cut(s)	262
HindIII	AAGCTT	1 cut(s)	214
HinfI	GANTC	5 cut(s)	185, 194, 205, 464, 650
HpaII	CCGG	1 cut(s)	659
HphI	GGTGA	2 cut(s)	118, 547
Hpy166II	GTNNAC	1 cut(s)	145
Hpy188I	TCNGA	5 cut(s)	35, 84, 190, 240, 469
Hpy188III	TCNNGA	2 cut(s)	75, 485
Hpy8I	GTNNAC	1 cut(s)	145
HpyAV	CCTTC	3 cut(s)	97, 503, 627
HpyCH4IV	ACGT	1 cut(s)	273
HpyCH4V	TGCA	2 cut(s)	18, 158
HpyF10VI	GCNNNNNNNGC	1 cut(s)	259
HpySE526I	ACGT	1 cut(s)	273
Hsp92II	CATG	5 cut(s)	153, 406, 450, 488, 632
HspAI	GCGC	1 cut(s)	262
KpnI	GGTACC	1 cut(s)	641
Kzo9I	GATC	3 cut(s)	3, 35, 307
LmnI	GCTCC	3 cut(s)	129, 259, 399
LweI	GCATC	1 cut(s)	318
MabI	ACCWGGT	1 cut(s)	561
MaeI	CTAG	1 cut(s)	297
MaeII	ACGT	1 cut(s)	273
MaeIII	GTNAC	1 cut(s)	335
MalI	GATC	3 cut(s)	5, 37, 309
MbiI	CCGCTC	1 cut(s)	72
MboI	GATC	3 cut(s)	3, 35, 307
MboII	GAAGA	3 cut(s)	194, 203, 310
MhlI	GDGCHC	4 cut(s)	44, 134, 255, 396
MluCI	AATT	3 cut(s)	28, 410, 494
MlyI	GAGTC	1 cut(s)	194
MnlI	CCTC	7 cut(s)	42, 72, 250, 348, 427, 481, 499
MroXI	GAANNNNTTC	1 cut(s)	649
MseI	TTAA	1 cut(s)	498
MslI	CAYNNNNRTG	2 cut(s)	49, 97
MspI	CCGG	1 cut(s)	659
MspR9I	CCNGG	2 cut(s)	170, 563
MvaI	CCWGG	2 cut(s)	170, 563
MvnI	CGCG	1 cut(s)	643
MwoI	GCNNNNNNNGC	1 cut(s)	259
NcoI	CCATGG	1 cut(s)	149
NdeII	GATC	3 cut(s)	3, 35, 307
NlaIII	CATG	5 cut(s)	153, 406, 450, 488, 632
NlaIV	GGNNCC	4 cut(s)	131, 147, 452, 639
NmuCI	GTSAC	1 cut(s)	335
PaeR7I	CTCGAG	1 cut(s)	254
PagI	TCATGA	1 cut(s)	484
PcsI	WCGNNNNNNNCGW	1 cut(s)	44
PdmI	GAANNNNTTC	1 cut(s)	649
PfeI	GAWTC	4 cut(s)	194, 205, 464, 650
PkrI	GCNGC	1 cut(s)	60
Ple19I	CGATCG	1 cut(s)	38
PleI	GAGTC	1 cut(s)	193
PpsI	GAGTC	1 cut(s)	193
PshAI	GACNNNNGTC	1 cut(s)	449
Psp124BI	GAGCTC	2 cut(s)	44, 255
Psp6I	CCWGG	2 cut(s)	168, 561
PspFI	CCCAGC	2 cut(s)	138, 331
PspGI	CCWGG	2 cut(s)	168, 561
PspN4I	GGNNCC	4 cut(s)	131, 147, 452, 639
PspPI	GGNCC	4 cut(s)	145, 349, 421, 451
PspXI	VCTCGAGB	1 cut(s)	254
PvuI	CGATCG	1 cut(s)	38
RsaI	GTAC	2 cut(s)	113, 639
RsaNI	GTAC	2 cut(s)	112, 638
RseI	CAYNNNNRTG	2 cut(s)	49, 97
SacI	GAGCTC	2 cut(s)	44, 255
SaqAI	TTAA	1 cut(s)	498
SatI	GCNGC	1 cut(s)	59
Sau3AI	GATC	3 cut(s)	3, 35, 307
Sau96I	GGNCC	4 cut(s)	145, 349, 421, 451
SchI	GAGTC	1 cut(s)	194
ScrFI	CCNGG	2 cut(s)	170, 563
SduI	GDGCHC	4 cut(s)	44, 134, 255, 396
SexAI	ACCWGGT	1 cut(s)	561
SfaNI	GCATC	1 cut(s)	318
Sfr274I	CTCGAG	1 cut(s)	254
SinI	GGWCC	4 cut(s)	145, 349, 421, 451
SlaI	CTCGAG	1 cut(s)	254
SmiMI	CAYNNNNRTG	2 cut(s)	49, 97
SmlI	CTYRAG	2 cut(s)	73, 254
SmoI	CTYRAG	2 cut(s)	73, 254
Sse9I	AATT	3 cut(s)	28, 410, 494
SsiI	CCGC	5 cut(s)	59, 70, 367, 431, 641
SspMI	CTAG	1 cut(s)	297
SstI	GAGCTC	2 cut(s)	44, 255
StyD4I	CCNGG	2 cut(s)	168, 561
StyI	CCWWGG	2 cut(s)	149, 417
TaiI	ACGT	1 cut(s)	276
TaqI	TCGA	5 cut(s)	38, 47, 197, 255, 306
TaqII	GACCGA	1 cut(s)	304
TasI	AATT	3 cut(s)	28, 410, 494
TatI	WGTACW	1 cut(s)	111
TauI	GCSGC	1 cut(s)	61
TfiI	GAWTC	4 cut(s)	194, 205, 464, 650
Tru1I	TTAA	1 cut(s)	498
Tru9I	TTAA	1 cut(s)	498
TscAI	CASTG	2 cut(s)	99, 346
TseFI	GTSAC	1 cut(s)	335
Tsp45I	GTSAC	1 cut(s)	335
TspDTI	ATGAA	2 cut(s)	257, 617
TspGWI	ACGGA	1 cut(s)	217
TspRI	CASTG	2 cut(s)	99, 346
VpaK11BI	GGWCC	4 cut(s)	145, 349, 421, 451
XapI	RAATTY	1 cut(s)	494
XcmI	CCANNNNNNNNNTGG	2 cut(s)	424, 487
XhoI	CTCGAG	1 cut(s)	254
XmnI	GAANNNNTTC	1 cut(s)	649
XspI	CTAG	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.