Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0002072

Physical Location & Seq

Genomic Coordinates Forward (+)

16728284 .. 16728982

Gene Structure 699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1106900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGAAGTCTGCACAGATCTATCGCTTGCCACTCCCTGCTGCGCACAGTCAGAAAACCAAGTTCAAGACAAACTGTCAACTGAACTGAATTTATTCGATCCAACTTGGACCAAATTGAAGAGAACAGCAGAGGACGACACTGCATTTGCTTCGAACCCAGAGCATGAAACACTATCTGCTACTGGGAATGCTATGCAAAAATTCATGAAGCGAAGAAATGAAGTGGCTGCAAAGATTTCCCGCCTGCTGATCAAATATAGCTTCAATGAGGCCGTGCAGCAGATTTGGAAAGGGCCAACCAACTCGAGCCGGTACATGGAGCCTTGGCCGATCAAGAAAACTCTGACGATGACCGACGTTGGACGGAACATGCACAGGGCCAGAAGGCTAGTGCTGAGGAGAAAGTTGGTTAAGAAACATATCTTGCCCTACTTGAGCTATCAAATTATTAACTGTGTCGAAAATCAGGGAGCAGGGATTACAATCTATGATCTTAATACGTGCTCCGAGCATCAATTGATTTTCAAGCGTTGGAAGGGCTCCGGAACTTATGTTTTGATGAGCGCATGGAGCCGTGAATTTGTGTGGAGGCGGCAACTGAAAGAAGGTGATCTGATTGGTTTTTGCTGGGATGCTCACAAGCTGATGCTGGTCTTTTCTGTCATCATGCGTGCTGGATCCAAGTATCCTTCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

233

Amino Acids

26.8

Weight (kDa)

9.53

Isoelectric Point (pI)

42.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78635 AT1G78640 AT2G33720
fragaria_vesca	FvH4_3g33791 FvH4_3g37630
malus_domestica	MD14G1106900.v1.1
prunus_persica	Prupe.5G092200_v2.0.a1 Prupe.5G102200_v2.0.a1 Prupe.5G102300_v2.0.a1 Prupe.5G102400_v2.0.a1 Prupe.5G102500_v2.0.a1
pyrus_communis	pycom05g30850 pycom05g30870 pycom14g10060
rosa_chinensis	RchiOBHm_Chr2g0116441
rosa_laevigata	RLG00000003924 RLG00000018270 RLG00000035460 RLG00000035470
rosa_multiflora	Rmu_sc0000338.1_g000013 Rmu_sc0000689.1_g000016 Rmu_sc0001164.1_g000007 Rmu_sc0004191.1_g000056 Rmu_sc0019528.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019310 Rroxscaffold_1G00019370 Rroxscaffold_5G00379640
rosa_rugosa	Rorug05G0141100 Rorug05G0339700
rosa_samantha	Rh2AG262200 Rh2CG268400 Rh2CG268500 Rh2DG270400 Rh5AG402000 Rh5BG019500 Rh5BG414100 Rh5CG438600 Rh5DG428700 Rh7AG166100 Rh7BG168200 Rh7CG174500 Rh7DG167800
rosa_wichuraiana	Rw5G037840 Rw7G014460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	43
AccIII	TCCGGA	1 cut(s)	542
AciI	CCGC	2 cut(s)	241, 592
AclWI	GGATC	3 cut(s)	92, 672, 685
AcoI	YGGCCR	1 cut(s)	326
AcsI	RAATTY	3 cut(s)	88, 200, 578
AfaI	GTAC	1 cut(s)	314
AfiI	CCNNNNNNNGG	1 cut(s)	316
AgsI	TTSAA	4 cut(s)	65, 118, 265, 526
AhdI	GACNNNNNGTC	1 cut(s)	73
AluBI	AGCT	3 cut(s)	261, 438, 643
AluI	AGCT	3 cut(s)	261, 438, 643
Alw21I	GWGCWC	1 cut(s)	506
AlwI	GGATC	3 cut(s)	92, 672, 685
Ama87I	CYCGRG	1 cut(s)	304
Aor13HI	TCCGGA	1 cut(s)	542
AoxI	GGCC	4 cut(s)	270, 293, 326, 378
ApeKI	GCWGC	3 cut(s)	39, 227, 277
ApoI	RAATTY	3 cut(s)	88, 200, 578
ArsI	GACNNNNNNTTYG	2 cut(s)	128, 160
Asp700I	GAANNNNTTC	1 cut(s)	92
AspLEI	GCGC	2 cut(s)	44, 566
AspS9I	GGNCC	3 cut(s)	108, 293, 378
AsuHPI	GGTGA	1 cut(s)	620
AsuII	TTCGAA	1 cut(s)	152
AvaI	CYCGRG	1 cut(s)	304
AvaII	GGWCC	1 cut(s)	108
BamHI	GGATCC	1 cut(s)	677
BanII	GRGCYC	1 cut(s)	542
Bbv12I	GWGCWC	1 cut(s)	506
BbvCI	CCTCAGC	1 cut(s)	395
BbvI	GCAGC	3 cut(s)	26, 214, 289
BceAI	ACGGC	2 cut(s)	257, 558
BcgI	CGANNNNNNTGC	2 cut(s)	132, 166
BciVI	GTATCC	1 cut(s)	696
BclI	TGATCA	1 cut(s)	249
BfaI	CTAG	1 cut(s)	389
BfuI	GTATCC	1 cut(s)	696
BglII	AGATCT	1 cut(s)	16
BisI	GCNGC	4 cut(s)	40, 228, 278, 593
BlsI	GCNGC	4 cut(s)	41, 229, 279, 594
Bme18I	GGWCC	1 cut(s)	108
BmeRI	GACNNNNNGTC	1 cut(s)	73
BmeT110I	CYCGRG	1 cut(s)	304
BmgT120I	GGNCC	3 cut(s)	108, 293, 378
BmiI	GGNNCC	4 cut(s)	321, 541, 572, 679
BmrI	ACTGGG	1 cut(s)	192
BmsI	GCATC	3 cut(s)	520, 622, 636
BmuI	ACTGGG	1 cut(s)	192
Bpu10I	CCTNAGC	1 cut(s)	395
Bpu14I	TTCGAA	1 cut(s)	152
BpuEI	CTTGAG	1 cut(s)	454
BsaAI	YACGTR	1 cut(s)	501
BsaBI	GATNNNNATC	1 cut(s)	482
BsaJI	CCNNGG	1 cut(s)	323
BsaWI	WCCGGW	1 cut(s)	542
Bsc4I	CCNNNNNNNGG	1 cut(s)	316
Bse118I	RCCGGY	1 cut(s)	309
Bse1I	ACTGG	1 cut(s)	187
Bse8I	GATNNNNATC	1 cut(s)	482
BseAI	TCCGGA	1 cut(s)	542
BseDI	CCNNGG	1 cut(s)	323
BseGI	GGATG	1 cut(s)	637
BseJI	GATNNNNATC	1 cut(s)	482
BseLI	CCNNNNNNNGG	1 cut(s)	316
BseMII	CTCAG	1 cut(s)	386
BseNI	ACTGG	1 cut(s)	187
BseRI	GAGGAG	1 cut(s)	412
BseXI	GCAGC	3 cut(s)	26, 214, 289
BseYI	CCCAGC	1 cut(s)	627
BsgI	GTGCAG	1 cut(s)	296
BshFI	GGCC	4 cut(s)	272, 295, 328, 380
BsiHKAI	GWGCWC	1 cut(s)	506
BsiHKCI	CYCGRG	1 cut(s)	304
BsiSI	CCGG	2 cut(s)	310, 543
BslI	CCNNNNNNNGG	1 cut(s)	316
BsmI	GAATGC	1 cut(s)	193
BsnI	GGCC	4 cut(s)	272, 295, 328, 380
BsoBI	CYCGRG	1 cut(s)	304
Bsp119I	TTCGAA	1 cut(s)	152
Bsp1286I	GDGCHC	2 cut(s)	506, 542
Bsp13I	TCCGGA	1 cut(s)	542
Bsp143I	GATC	7 cut(s)	16, 97, 249, 330, 490, 610, 677
BspACI	CCGC	2 cut(s)	241, 592
BspANI	GGCC	4 cut(s)	272, 295, 328, 380
BspCNI	CTCAG	1 cut(s)	387
BspEI	TCCGGA	1 cut(s)	542
BspHI	TCATGA	1 cut(s)	204
BspLI	GGNNCC	4 cut(s)	321, 541, 572, 679
BspPI	GGATC	3 cut(s)	92, 672, 685
BspT104I	TTCGAA	1 cut(s)	152
BsrFI	RCCGGY	1 cut(s)	309
BsrI	ACTGG	1 cut(s)	187
BssAI	RCCGGY	1 cut(s)	309
BssECI	CCNNGG	1 cut(s)	323
BssMI	GATC	7 cut(s)	16, 97, 249, 330, 490, 610, 677
BssT1I	CCWWGG	1 cut(s)	323
Bst4CI	ACNGT	3 cut(s)	48, 75, 455
Bst6I	CTCTTC	1 cut(s)	113
BstBAI	YACGTR	1 cut(s)	501
BstBI	TTCGAA	1 cut(s)	152
BstC8I	GCNNGC	3 cut(s)	27, 245, 672
BstDEI	CTNAG	1 cut(s)	395
BstF5I	GGATG	1 cut(s)	637
BstHHI	GCGC	2 cut(s)	44, 566
BstKTI	GATC	7 cut(s)	19, 100, 252, 333, 493, 613, 680
BstMBI	GATC	7 cut(s)	16, 97, 249, 330, 490, 610, 677
BstMWI	GCNNNNNNNGC	1 cut(s)	570
BstNSI	RCATGY	1 cut(s)	373
BstV1I	GCAGC	3 cut(s)	26, 214, 289
BstX2I	RGATCY	2 cut(s)	16, 677
BstYI	RGATCY	2 cut(s)	16, 677
BsuI	GTATCC	1 cut(s)	696
BsuRI	GGCC	4 cut(s)	272, 295, 328, 380
BtsCI	GGATG	1 cut(s)	637
BtsI	GCAGTG	1 cut(s)	138
BtsIMutI	CAGTG	1 cut(s)	138
Cac8I	GCNNGC	3 cut(s)	27, 245, 672
CciI	TCATGA	1 cut(s)	204
CfoI	GCGC	2 cut(s)	44, 566
Cfr10I	RCCGGY	1 cut(s)	309
Cfr13I	GGNCC	3 cut(s)	108, 293, 378
Csp6I	GTAC	1 cut(s)	313
CviAII	CATG	6 cut(s)	164, 205, 316, 370, 567, 667
CviQI	GTAC	1 cut(s)	313
DdeI	CTNAG	1 cut(s)	395
DpnI	GATC	7 cut(s)	18, 99, 251, 332, 492, 612, 679
DpnII	GATC	7 cut(s)	16, 97, 249, 330, 490, 610, 677
DriI	GACNNNNNGTC	1 cut(s)	73
EaeI	YGGCCR	1 cut(s)	326
Eam1104I	CTCTTC	1 cut(s)	113
Eam1105I	GACNNNNNGTC	1 cut(s)	73
EarI	CTCTTC	1 cut(s)	113
Eco130I	CCWWGG	1 cut(s)	323
Eco24I	GRGCYC	1 cut(s)	542
Eco47I	GGWCC	1 cut(s)	108
Eco88I	CYCGRG	1 cut(s)	304
EcoT14I	CCWWGG	1 cut(s)	323
EcoT38I	GRGCYC	1 cut(s)	542
ErhI	CCWWGG	1 cut(s)	323
FaeI	CATG	6 cut(s)	167, 208, 319, 373, 570, 670
FatI	CATG	6 cut(s)	163, 204, 315, 369, 566, 666
FauI	CCCGC	1 cut(s)	248
FbaI	TGATCA	1 cut(s)	249
Fnu4HI	GCNGC	4 cut(s)	40, 228, 278, 593
FokI	GGATG	1 cut(s)	644
FriOI	GRGCYC	1 cut(s)	542
Fsp4HI	GCNGC	4 cut(s)	40, 228, 278, 593
FspBI	CTAG	1 cut(s)	389
FspI	TGCGCA	1 cut(s)	43
GlaI	GCGC	2 cut(s)	43, 565
GluI	GCNGC	4 cut(s)	40, 228, 278, 593
GsaI	CCCAGC	1 cut(s)	631
HaeIII	GGCC	4 cut(s)	272, 295, 328, 380
HapII	CCGG	2 cut(s)	310, 543
HhaI	GCGC	2 cut(s)	44, 566
Hin1II	CATG	6 cut(s)	167, 208, 319, 373, 570, 670
Hin6I	GCGC	2 cut(s)	42, 564
HinP1I	GCGC	2 cut(s)	42, 564
HincII	GTYRAC	1 cut(s)	78
HindII	GTYRAC	1 cut(s)	78
HpaII	CCGG	2 cut(s)	310, 543
HphI	GGTGA	1 cut(s)	620
Hpy166II	GTNNAC	1 cut(s)	78
Hpy188I	TCNGA	4 cut(s)	52, 345, 508, 615
Hpy188III	TCNNGA	4 cut(s)	65, 205, 334, 543
Hpy8I	GTNNAC	1 cut(s)	78
Hpy99I	CGWCG	1 cut(s)	359
HpyAV	CCTTC	4 cut(s)	378, 529, 599, 699
HpyCH4III	ACNGT	3 cut(s)	48, 75, 455
HpyCH4IV	ACGT	2 cut(s)	357, 500
HpyCH4V	TGCA	6 cut(s)	12, 143, 196, 230, 277, 373
HpyF10VI	GCNNNNNNNGC	1 cut(s)	570
HpyF3I	CTNAG	1 cut(s)	395
HpySE526I	ACGT	2 cut(s)	357, 500
Hsp92II	CATG	6 cut(s)	167, 208, 319, 373, 570, 670
HspAI	GCGC	2 cut(s)	42, 564
Kpn2I	TCCGGA	1 cut(s)	542
Ksp22I	TGATCA	1 cut(s)	249
Kzo9I	GATC	7 cut(s)	16, 97, 249, 330, 490, 610, 677
LmnI	GCTCC	5 cut(s)	319, 470, 509, 545, 570
Lsp1109I	GCAGC	3 cut(s)	26, 214, 289
LweI	GCATC	3 cut(s)	520, 622, 636
MaeI	CTAG	1 cut(s)	389
MaeII	ACGT	2 cut(s)	357, 500
MalI	GATC	7 cut(s)	18, 99, 251, 332, 492, 612, 679
MboI	GATC	7 cut(s)	16, 97, 249, 330, 490, 610, 677
MboII	GAAGA	2 cut(s)	130, 225
MfeI	CAATTG	1 cut(s)	515
MflI	RGATCY	2 cut(s)	16, 677
MhlI	GDGCHC	2 cut(s)	506, 542
MluCI	AATT	6 cut(s)	88, 113, 200, 444, 515, 578
MmeI	TCCRAC	3 cut(s)	125, 340, 512
MnlI	CCTC	4 cut(s)	124, 262, 390, 582
MroI	TCCGGA	1 cut(s)	542
MroXI	GAANNNNTTC	1 cut(s)	92
MseI	TTAA	3 cut(s)	411, 450, 495
MspI	CCGG	2 cut(s)	310, 543
MunI	CAATTG	1 cut(s)	515
Mva1269I	GAATGC	1 cut(s)	193
MwoI	GCNNNNNNNGC	1 cut(s)	570
NdeII	GATC	7 cut(s)	16, 97, 249, 330, 490, 610, 677
NlaIII	CATG	6 cut(s)	167, 208, 319, 373, 570, 670
NlaIV	GGNNCC	4 cut(s)	321, 541, 572, 679
NsbI	TGCGCA	1 cut(s)	43
NspI	RCATGY	1 cut(s)	373
NspV	TTCGAA	1 cut(s)	152
PaeR7I	CTCGAG	1 cut(s)	304
PagI	TCATGA	1 cut(s)	204
PctI	GAATGC	1 cut(s)	193
PdmI	GAANNNNTTC	1 cut(s)	92
PkrI	GCNGC	4 cut(s)	41, 229, 279, 594
Ppu21I	YACGTR	1 cut(s)	501
PspFI	CCCAGC	1 cut(s)	627
PspN4I	GGNNCC	4 cut(s)	321, 541, 572, 679
PspPI	GGNCC	3 cut(s)	108, 293, 378
PspXI	VCTCGAGB	1 cut(s)	304
PsuI	RGATCY	2 cut(s)	16, 677
RsaI	GTAC	1 cut(s)	314
RsaNI	GTAC	1 cut(s)	313
SaqAI	TTAA	3 cut(s)	411, 450, 495
SatI	GCNGC	4 cut(s)	40, 228, 278, 593
Sau3AI	GATC	7 cut(s)	16, 97, 249, 330, 490, 610, 677
Sau96I	GGNCC	3 cut(s)	108, 293, 378
SduI	GDGCHC	2 cut(s)	506, 542
SetI	ASST	6 cut(s)	263, 360, 440, 503, 610, 645
SfaNI	GCATC	3 cut(s)	520, 622, 636
Sfr274I	CTCGAG	1 cut(s)	304
SfuI	TTCGAA	1 cut(s)	152
SinI	GGWCC	1 cut(s)	108
SlaI	CTCGAG	1 cut(s)	304
SmlI	CTYRAG	2 cut(s)	304, 433
SmoI	CTYRAG	2 cut(s)	304, 433
Sse9I	AATT	6 cut(s)	88, 113, 200, 444, 515, 578
SsiI	CCGC	2 cut(s)	241, 592
SspMI	CTAG	1 cut(s)	389
StyI	CCWWGG	1 cut(s)	323
TaaI	ACNGT	3 cut(s)	48, 75, 455
TaiI	ACGT	2 cut(s)	360, 503
TaqI	TCGA	4 cut(s)	96, 152, 305, 459
TaqII	GACCGA	1 cut(s)	368
TasI	AATT	6 cut(s)	88, 113, 200, 444, 515, 578
TauI	GCSGC	1 cut(s)	595
Tru1I	TTAA	3 cut(s)	411, 450, 495
Tru9I	TTAA	3 cut(s)	411, 450, 495
TscAI	CASTG	1 cut(s)	145
TseI	GCWGC	3 cut(s)	39, 227, 277
TspDTI	ATGAA	4 cut(s)	180, 193, 221, 234
TspGWI	ACGGA	1 cut(s)	379
TspRI	CASTG	1 cut(s)	145
VpaK11BI	GGWCC	1 cut(s)	108
XapI	RAATTY	3 cut(s)	88, 200, 578
XceI	RCATGY	1 cut(s)	373
XhoI	CTCGAG	1 cut(s)	304
XmnI	GAANNNNTTC	1 cut(s)	92
XspI	CTAG	1 cut(s)	389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.