Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0002072

Physical Location & Seq

Genomic Coordinates Reverse (-)

30799163 .. 30799669

Gene Structure 507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g30850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGAAACTAGAAGAAGAAGACCACCACCCTTCAAAAGTACGACTGTTCGGCGTTGGCCTTGGCAGTAGTTTGAATGATCCTTGCGGAGGACACGAACCCTCTACCGATCTGTATCTGTGGGATCCGACCTGGGACTACAGCTCAATTTGGAAAATCAAGAAGAGGCTAGCGGCGAGTGACCTCGGAGAGCTGAGCAGGCTGTTGATGCCAAAAGAGGCAGCGCGAAAACACGTTATGTCTTACTTGGACGACAAGTTAGCCAAGATGGTCGACAGTAAAGAGGGCTTACCAGTTACGGTTGTGGACCGGGATACGTGCAACCTGCATGAGTTAACTTTTAAGCATTGGAACTCTGGTGATTTTTACGTTCTGAATGGAGGTTGGAGACCGAAGTTTGTGGTTCGGAGAGGCTTGAAGGAAAATGACGAAATCGGTCTTTACCTTGACTGGGACTGGAAAACTGCCAATTACATCTTCAAGTTTTCTGTTCTGCAAGGAGCAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

169

Amino Acids

19.36

Weight (kDa)

6.59

Isoelectric Point (pI)

35.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	54 - 161	2.9e-09	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78635 AT1G78640 AT2G33720
fragaria_vesca	FvH4_3g33791 FvH4_3g37630
malus_domestica	MD14G1106900.v1.1
prunus_persica	Prupe.5G092200_v2.0.a1 Prupe.5G102200_v2.0.a1 Prupe.5G102300_v2.0.a1 Prupe.5G102400_v2.0.a1 Prupe.5G102500_v2.0.a1
pyrus_communis	pycom05g30850 pycom05g30870 pycom14g10060
rosa_chinensis	RchiOBHm_Chr2g0116441
rosa_laevigata	RLG00000003924 RLG00000018270 RLG00000035460 RLG00000035470
rosa_multiflora	Rmu_sc0000338.1_g000013 Rmu_sc0000689.1_g000016 Rmu_sc0001164.1_g000007 Rmu_sc0004191.1_g000056 Rmu_sc0019528.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019310 Rroxscaffold_1G00019370 Rroxscaffold_5G00379640
rosa_rugosa	Rorug05G0141100 Rorug05G0339700
rosa_samantha	Rh2AG262200 Rh2CG268400 Rh2CG268500 Rh2DG270400 Rh5AG402000 Rh5BG019500 Rh5BG414100 Rh5CG438600 Rh5DG428700 Rh7AG166100 Rh7BG168200 Rh7CG174500 Rh7DG167800
rosa_wichuraiana	Rw5G037840 Rw7G014460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	330
AccI	GTMKAC	1 cut(s)	270
AccII	CGCG	1 cut(s)	223
AciI	CCGC	2 cut(s)	84, 170
AclWI	GGATC	3 cut(s)	71, 116, 129
AfaI	GTAC	1 cut(s)	39
AfiI	CCNNNNNNNGG	2 cut(s)	86, 448
AflIII	ACRYGT	1 cut(s)	229
AgsI	TTSAA	4 cut(s)	33, 73, 415, 478
AjnI	CCWGG	1 cut(s)	128
AjuI	GAANNNNNNNTTGG	2 cut(s)	458, 490
AluBI	AGCT	2 cut(s)	141, 190
AluI	AGCT	2 cut(s)	141, 190
Alw26I	GTCTC	1 cut(s)	379
AlwI	GGATC	3 cut(s)	71, 116, 129
AoxI	GGCC	1 cut(s)	55
ApeKI	GCWGC	1 cut(s)	218
AspLEI	GCGC	1 cut(s)	223
AspS9I	GGNCC	1 cut(s)	304
AsuC2I	CCSGG	1 cut(s)	308
AsuHPI	GGTGA	1 cut(s)	368
AsuNHI	GCTAGC	1 cut(s)	166
AvaII	GGWCC	1 cut(s)	304
BamHI	GGATCC	1 cut(s)	121
BbsI	GAAGAC	1 cut(s)	24
BbvI	GCAGC	1 cut(s)	230
BccI	CCATC	1 cut(s)	259
BciT130I	CCWGG	1 cut(s)	130
BciVI	GTATCC	1 cut(s)	304
BcnI	CCSGG	1 cut(s)	308
BcoDI	GTCTC	1 cut(s)	379
BfaI	CTAG	2 cut(s)	8, 167
BfmI	CTRYAG	1 cut(s)	136
BfuAI	ACCTGC	1 cut(s)	330
BfuI	GTATCC	1 cut(s)	304
BisI	GCNGC	2 cut(s)	171, 219
BlpI	GCTNAGC	1 cut(s)	191
BlsI	GCNGC	2 cut(s)	172, 220
Bme1390I	CCNGG	2 cut(s)	130, 308
Bme18I	GGWCC	1 cut(s)	304
BmgT120I	GGNCC	1 cut(s)	304
BmiI	GGNNCC	1 cut(s)	123
BmrFI	CCNGG	2 cut(s)	130, 308
BmrI	ACTGGG	1 cut(s)	457
BmsI	GCATC	1 cut(s)	195
BmtI	GCTAGC	1 cut(s)	170
BmuI	ACTGGG	1 cut(s)	457
BpiI	GAAGAC	1 cut(s)	24
Bpu1102I	GCTNAGC	1 cut(s)	191
BpuMI	CCSGG	1 cut(s)	308
BsaAI	YACGTR	1 cut(s)	315
BsaBI	GATNNNNATC	1 cut(s)	111
BsaI	GGTCTC	1 cut(s)	379
BsaJI	CCNNGG	3 cut(s)	58, 129, 181
Bsc4I	CCNNNNNNNGG	2 cut(s)	86, 448
Bse1I	ACTGG	3 cut(s)	290, 452, 458
Bse8I	GATNNNNATC	1 cut(s)	111
BseBI	CCWGG	1 cut(s)	130
BseDI	CCNNGG	3 cut(s)	58, 129, 181
BseJI	GATNNNNATC	1 cut(s)	111
BseLI	CCNNNNNNNGG	2 cut(s)	86, 448
BseMII	CTCAG	1 cut(s)	182
BseNI	ACTGG	3 cut(s)	290, 452, 458
BseXI	GCAGC	1 cut(s)	230
Bsh1236I	CGCG	1 cut(s)	223
BshFI	GGCC	1 cut(s)	57
BsiSI	CCGG	1 cut(s)	307
BslFI	GGGAC	2 cut(s)	146, 464
BslI	CCNNNNNNNGG	2 cut(s)	86, 448
BsmAI	GTCTC	1 cut(s)	379
BsmFI	GGGAC	2 cut(s)	146, 464
BsnI	GGCC	1 cut(s)	57
Bso31I	GGTCTC	1 cut(s)	379
Bsp143I	GATC	3 cut(s)	76, 106, 121
Bsp1720I	GCTNAGC	1 cut(s)	191
BspACI	CCGC	2 cut(s)	84, 170
BspANI	GGCC	1 cut(s)	57
BspCNI	CTCAG	1 cut(s)	183
BspFNI	CGCG	1 cut(s)	223
BspLI	GGNNCC	1 cut(s)	123
BspMI	ACCTGC	1 cut(s)	330
BspOI	GCTAGC	1 cut(s)	170
BspPI	GGATC	3 cut(s)	71, 116, 129
BspTNI	GGTCTC	1 cut(s)	379
BsrI	ACTGG	3 cut(s)	290, 452, 458
BssECI	CCNNGG	3 cut(s)	58, 129, 181
BssMI	GATC	3 cut(s)	76, 106, 121
BssT1I	CCWWGG	1 cut(s)	58
Bst2UI	CCWGG	1 cut(s)	130
Bst4CI	ACNGT	3 cut(s)	45, 275, 298
Bst6I	CTCTTC	1 cut(s)	155
BstBAI	YACGTR	1 cut(s)	315
BstC8I	GCNNGC	2 cut(s)	168, 197
BstDEI	CTNAG	1 cut(s)	191
BstENI	CCTNNNNNAGG	1 cut(s)	84
BstFNI	CGCG	1 cut(s)	223
BstHHI	GCGC	1 cut(s)	223
BstKTI	GATC	3 cut(s)	79, 109, 124
BstMAI	GTCTC	1 cut(s)	379
BstMBI	GATC	3 cut(s)	76, 106, 121
BstMWI	GCNNNNNNNGC	2 cut(s)	196, 205
BstNI	CCWGG	1 cut(s)	130
BstSCI	CCNGG	2 cut(s)	128, 306
BstSFI	CTRYAG	1 cut(s)	136
BstUI	CGCG	1 cut(s)	223
BstV1I	GCAGC	1 cut(s)	230
BstV2I	GAAGAC	1 cut(s)	24
BstX2I	RGATCY	1 cut(s)	121
BstYI	RGATCY	1 cut(s)	121
BsuI	GTATCC	1 cut(s)	304
BsuRI	GGCC	1 cut(s)	57
BveI	ACCTGC	1 cut(s)	330
Cac8I	GCNNGC	2 cut(s)	168, 197
CfoI	GCGC	1 cut(s)	223
Cfr13I	GGNCC	1 cut(s)	304
Csp6I	GTAC	1 cut(s)	38
CviAII	CATG	1 cut(s)	326
CviJI	RGCY	8 cut(s)	57, 141, 166, 190, 199, 260, 285, 411
CviKI_1	RGCY	8 cut(s)	57, 141, 166, 190, 199, 260, 285, 411
CviQI	GTAC	1 cut(s)	38
DdeI	CTNAG	1 cut(s)	191
DpnI	GATC	3 cut(s)	78, 108, 123
DpnII	GATC	3 cut(s)	76, 106, 121
Eam1104I	CTCTTC	1 cut(s)	155
EarI	CTCTTC	1 cut(s)	155
Eco130I	CCWWGG	1 cut(s)	58
Eco31I	GGTCTC	1 cut(s)	379
Eco47I	GGWCC	1 cut(s)	304
EcoNI	CCTNNNNNAGG	1 cut(s)	84
EcoRII	CCWGG	1 cut(s)	128
EcoT14I	CCWWGG	1 cut(s)	58
ErhI	CCWWGG	1 cut(s)	58
FaeI	CATG	1 cut(s)	329
FaiI	YATR	2 cut(s)	236, 327
FaqI	GGGAC	2 cut(s)	146, 464
FatI	CATG	1 cut(s)	325
FblI	GTMKAC	1 cut(s)	270
Fnu4HI	GCNGC	2 cut(s)	171, 219
Fsp4HI	GCNGC	2 cut(s)	171, 219
FspBI	CTAG	2 cut(s)	8, 167
GlaI	GCGC	1 cut(s)	222
GluI	GCNGC	2 cut(s)	171, 219
HaeIII	GGCC	1 cut(s)	57
HapII	CCGG	1 cut(s)	307
HhaI	GCGC	1 cut(s)	223
Hin1II	CATG	1 cut(s)	329
Hin6I	GCGC	1 cut(s)	221
HinP1I	GCGC	1 cut(s)	221
HincII	GTYRAC	2 cut(s)	271, 333
HindII	GTYRAC	2 cut(s)	271, 333
HpaI	GTTAAC	1 cut(s)	333
HpaII	CCGG	1 cut(s)	307
HphI	GGTGA	1 cut(s)	368
Hpy166II	GTNNAC	3 cut(s)	271, 304, 333
Hpy188I	TCNGA	4 cut(s)	126, 185, 372, 405
Hpy188III	TCNNGA	1 cut(s)	157
Hpy8I	GTNNAC	3 cut(s)	271, 304, 333
HpyAV	CCTTC	2 cut(s)	39, 409
HpyCH4III	ACNGT	3 cut(s)	45, 275, 298
HpyCH4IV	ACGT	3 cut(s)	231, 314, 366
HpyCH4V	TGCA	3 cut(s)	318, 325, 493
HpyF10VI	GCNNNNNNNGC	2 cut(s)	196, 205
HpyF3I	CTNAG	1 cut(s)	191
HpySE526I	ACGT	3 cut(s)	231, 314, 366
Hsp92II	CATG	1 cut(s)	329
HspAI	GCGC	1 cut(s)	221
KspAI	GTTAAC	1 cut(s)	333
Kzo9I	GATC	3 cut(s)	76, 106, 121
LmnI	GCTCC	1 cut(s)	497
LpnPI	CCDG	9 cut(s)	115, 142, 181, 303, 320, 335, 339, 433, 439
Lsp1109I	GCAGC	1 cut(s)	230
LweI	GCATC	1 cut(s)	195
MaeI	CTAG	2 cut(s)	8, 167
MaeII	ACGT	3 cut(s)	231, 314, 366
MaeIII	GTNAC	2 cut(s)	176, 292
MalI	GATC	3 cut(s)	78, 108, 123
MboI	GATC	3 cut(s)	76, 106, 121
MboII	GAAGA	5 cut(s)	23, 26, 29, 172, 466
MflI	RGATCY	1 cut(s)	121
MluCI	AATT	2 cut(s)	144, 466
MmeI	TCCRAC	2 cut(s)	149, 362
MnlI	CCTC	8 cut(s)	80, 109, 156, 191, 208, 274, 371, 401
MseI	TTAA	2 cut(s)	332, 339
MspI	CCGG	1 cut(s)	307
MspR9I	CCNGG	2 cut(s)	130, 308
MvaI	CCWGG	1 cut(s)	130
MvnI	CGCG	1 cut(s)	223
MwoI	GCNNNNNNNGC	2 cut(s)	196, 205
NciI	CCSGG	1 cut(s)	308
NdeII	GATC	3 cut(s)	76, 106, 121
NheI	GCTAGC	1 cut(s)	166
NlaIII	CATG	1 cut(s)	329
NlaIV	GGNNCC	1 cut(s)	123
NmuCI	GTSAC	1 cut(s)	176
PkrI	GCNGC	2 cut(s)	172, 220
Ppu21I	YACGTR	1 cut(s)	315
Psp6I	CCWGG	1 cut(s)	128
PspGI	CCWGG	1 cut(s)	128
PspN4I	GGNNCC	1 cut(s)	123
PspPI	GGNCC	1 cut(s)	304
PsuI	RGATCY	1 cut(s)	121
RsaI	GTAC	1 cut(s)	39
RsaNI	GTAC	1 cut(s)	38
SalI	GTCGAC	1 cut(s)	269
SaqAI	TTAA	2 cut(s)	332, 339
SatI	GCNGC	2 cut(s)	171, 219
Sau3AI	GATC	3 cut(s)	76, 106, 121
Sau96I	GGNCC	1 cut(s)	304
ScrFI	CCNGG	2 cut(s)	130, 308
SfaNI	GCATC	1 cut(s)	195
SfcI	CTRYAG	1 cut(s)	136
SinI	GGWCC	1 cut(s)	304
Sse9I	AATT	2 cut(s)	144, 466
SsiI	CCGC	2 cut(s)	84, 170
SspMI	CTAG	2 cut(s)	8, 167
StyD4I	CCNGG	2 cut(s)	128, 306
StyI	CCWWGG	1 cut(s)	58
TaaI	ACNGT	3 cut(s)	45, 275, 298
TaiI	ACGT	3 cut(s)	234, 317, 369
TaqI	TCGA	1 cut(s)	270
TaqII	GACCGA	2 cut(s)	403, 422
TasI	AATT	2 cut(s)	144, 466
TauI	GCSGC	1 cut(s)	173
Tru1I	TTAA	2 cut(s)	332, 339
Tru9I	TTAA	2 cut(s)	332, 339
TseFI	GTSAC	1 cut(s)	176
TseI	GCWGC	1 cut(s)	218
Tsp45I	GTSAC	1 cut(s)	176
TspDTI	ATGAA	1 cut(s)	17
VpaK11BI	GGWCC	1 cut(s)	304
XagI	CCTNNNNNAGG	1 cut(s)	84
XmiI	GTMKAC	1 cut(s)	270
XspI	CTAG	2 cut(s)	8, 167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.