Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004191.1

Orthogroup ID

OG0002072

Physical Location & Seq

Genomic Coordinates Forward (+)

238117 .. 238455

Gene Structure 339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004191.1_g000056.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

atgttgggtcacactgataagatactgaggttgtctctgcggaagccatgggtggataaggatgtgctcccaaacatgtctcaattagccaaggaccagatgaaccagggtcataggacaatggtccaagtatttgattctgacacgttgtctactcatgagttggcattcaggaaagcggaaagttttgtttttcgtggttcgtgggtgaaagattttgtgcataggagagacctggttgcacaggacgctattggtctttactggcagacggacaaacgaagatttgttttctctgttctcggaagcttactgcgaaaagattctcaactagaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

112

Amino Acids

13.13

Weight (kDa)

9.69

Isoelectric Point (pI)

34.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78635 AT1G78640 AT2G33720
fragaria_vesca	FvH4_3g33791 FvH4_3g37630
malus_domestica	MD14G1106900.v1.1
prunus_persica	Prupe.5G092200_v2.0.a1 Prupe.5G102200_v2.0.a1 Prupe.5G102300_v2.0.a1 Prupe.5G102400_v2.0.a1 Prupe.5G102500_v2.0.a1
pyrus_communis	pycom05g30850 pycom05g30870 pycom14g10060
rosa_chinensis	RchiOBHm_Chr2g0116441
rosa_laevigata	RLG00000003924 RLG00000018270 RLG00000035460 RLG00000035470
rosa_multiflora	Rmu_sc0000338.1_g000013 Rmu_sc0000689.1_g000016 Rmu_sc0001164.1_g000007 Rmu_sc0004191.1_g000056 Rmu_sc0019528.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019310 Rroxscaffold_1G00019370 Rroxscaffold_5G00379640
rosa_rugosa	Rorug05G0141100 Rorug05G0339700
rosa_samantha	Rh2AG262200 Rh2CG268400 Rh2CG268500 Rh2DG270400 Rh5AG402000 Rh5BG019500 Rh5BG414100 Rh5CG438600 Rh5DG428700 Rh7AG166100 Rh7BG168200 Rh7CG174500 Rh7DG167800
rosa_wichuraiana	Rw5G037840 Rw7G014460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	152
AciI	CCGC	2 cut(s)	40, 179
AflIII	ACRYGT	2 cut(s)	75, 144
AhdI	GACNNNNNGTC	1 cut(s)	148
AjnI	CCWGG	2 cut(s)	105, 234
AluBI	AGCT	1 cut(s)	309
AluI	AGCT	1 cut(s)	309
Alw21I	GWGCWC	1 cut(s)	69
Alw26I	GTCTC	3 cut(s)	39, 84, 225
Asp700I	GAANNNNTTC	1 cut(s)	322
AspS9I	GGNCC	2 cut(s)	94, 124
AsuHPI	GGTGA	1 cut(s)	220
AvaII	GGWCC	2 cut(s)	94, 124
BaeI	ACNNNNGTAYC	2 cut(s)	14, 47
Bbv12I	GWGCWC	1 cut(s)	69
BciT130I	CCWGG	2 cut(s)	107, 236
BcoDI	GTCTC	3 cut(s)	39, 84, 225
BfaI	CTAG	1 cut(s)	332
Bme1390I	CCNGG	2 cut(s)	107, 236
Bme18I	GGWCC	2 cut(s)	94, 124
BmeRI	GACNNNNNGTC	1 cut(s)	148
BmgT120I	GGNCC	2 cut(s)	94, 124
BmrFI	CCNGG	2 cut(s)	107, 236
BoxI	GACNNNNGTC	1 cut(s)	122
BplI	GAGNNNNNCTC	2 cut(s)	19, 51
BsaI	GGTCTC	1 cut(s)	225
BsaJI	CCNNGG	3 cut(s)	47, 90, 106
Bse1I	ACTGG	1 cut(s)	269
BseBI	CCWGG	2 cut(s)	107, 236
BseDI	CCNNGG	3 cut(s)	47, 90, 106
BseGI	GGATG	1 cut(s)	67
BseMII	CTCAG	1 cut(s)	17
BseNI	ACTGG	1 cut(s)	269
BsiHKAI	GWGCWC	1 cut(s)	69
BsmAI	GTCTC	3 cut(s)	39, 84, 225
BsmI	GAATGC	1 cut(s)	167
Bso31I	GGTCTC	1 cut(s)	225
Bsp1286I	GDGCHC	1 cut(s)	69
Bsp19I	CCATGG	1 cut(s)	47
BspACI	CCGC	2 cut(s)	40, 179
BspCNI	CTCAG	1 cut(s)	18
BspHI	TCATGA	1 cut(s)	157
BspTNI	GGTCTC	1 cut(s)	225
BsrI	ACTGG	1 cut(s)	269
BssECI	CCNNGG	3 cut(s)	47, 90, 106
BssT1I	CCWWGG	2 cut(s)	47, 90
Bst2UI	CCWGG	2 cut(s)	107, 236
BstDEI	CTNAG	1 cut(s)	26
BstDSI	CCRYGG	1 cut(s)	47
BstF5I	GGATG	1 cut(s)	67
BstMAI	GTCTC	3 cut(s)	39, 84, 225
BstMWI	GCNNNNNNNGC	1 cut(s)	248
BstNI	CCWGG	2 cut(s)	107, 236
BstNSI	RCATGY	1 cut(s)	79
BstPAI	GACNNNNGTC	1 cut(s)	122
BstSCI	CCNGG	2 cut(s)	105, 234
BtgI	CCRYGG	1 cut(s)	47
BtsCI	GGATG	1 cut(s)	67
BtsIMutI	CAGTG	1 cut(s)	12
CciI	TCATGA	1 cut(s)	157
Cfr13I	GGNCC	2 cut(s)	94, 124
CseI	GACGC	1 cut(s)	257
CsiI	ACCWGGT	1 cut(s)	234
CviAII	CATG	3 cut(s)	48, 76, 158
CviJI	RGCY	3 cut(s)	46, 89, 309
CviKI_1	RGCY	3 cut(s)	46, 89, 309
DdeI	CTNAG	1 cut(s)	26
DriI	GACNNNNNGTC	1 cut(s)	148
Eam1105I	GACNNNNNGTC	1 cut(s)	148
Eco130I	CCWWGG	2 cut(s)	47, 90
Eco31I	GGTCTC	1 cut(s)	225
Eco47I	GGWCC	2 cut(s)	94, 124
EcoRII	CCWGG	2 cut(s)	105, 234
EcoT14I	CCWWGG	2 cut(s)	47, 90
ErhI	CCWWGG	2 cut(s)	47, 90
FaeI	CATG	3 cut(s)	51, 79, 161
FaiI	YATR	5 cut(s)	49, 77, 114, 159, 225
FatI	CATG	3 cut(s)	47, 75, 157
FblI	GTMKAC	1 cut(s)	152
FokI	GGATG	1 cut(s)	74
FspBI	CTAG	1 cut(s)	332
HgaI	GACGC	1 cut(s)	257
Hin1II	CATG	3 cut(s)	51, 79, 161
HindIII	AAGCTT	1 cut(s)	307
HinfI	GANTC	2 cut(s)	137, 323
HphI	GGTGA	1 cut(s)	220
Hpy166II	GTNNAC	1 cut(s)	153
Hpy188I	TCNGA	2 cut(s)	142, 305
Hpy188III	TCNNGA	2 cut(s)	158, 172
Hpy8I	GTNNAC	1 cut(s)	153
HpyCH4IV	ACGT	1 cut(s)	146
HpyCH4V	TGCA	2 cut(s)	223, 242
HpyF10VI	GCNNNNNNNGC	1 cut(s)	248
HpyF3I	CTNAG	1 cut(s)	26
HpySE526I	ACGT	1 cut(s)	146
Hsp92II	CATG	3 cut(s)	51, 79, 161
LmnI	GCTCC	1 cut(s)	72
LpnPI	CCDG	8 cut(s)	92, 110, 119, 157, 221, 230, 248, 250
MabI	ACCWGGT	1 cut(s)	234
MaeI	CTAG	1 cut(s)	332
MaeII	ACGT	1 cut(s)	146
MaeIII	GTNAC	1 cut(s)	8
MboII	GAAGA	1 cut(s)	294
MhlI	GDGCHC	1 cut(s)	69
MluCI	AATT	1 cut(s)	83
MnlI	CCTC	1 cut(s)	21
MroXI	GAANNNNTTC	1 cut(s)	322
MspR9I	CCNGG	2 cut(s)	107, 236
Mva1269I	GAATGC	1 cut(s)	167
MvaI	CCWGG	2 cut(s)	107, 236
MwoI	GCNNNNNNNGC	1 cut(s)	248
NcoI	CCATGG	1 cut(s)	47
NlaIII	CATG	3 cut(s)	51, 79, 161
NmuCI	GTSAC	1 cut(s)	8
NspI	RCATGY	1 cut(s)	79
PagI	TCATGA	1 cut(s)	157
PciI	ACATGT	1 cut(s)	75
PctI	GAATGC	1 cut(s)	167
PdmI	GAANNNNTTC	1 cut(s)	322
PfeI	GAWTC	2 cut(s)	137, 323
PscI	ACATGT	1 cut(s)	75
PshAI	GACNNNNGTC	1 cut(s)	122
Psp6I	CCWGG	2 cut(s)	105, 234
PspGI	CCWGG	2 cut(s)	105, 234
PspPI	GGNCC	2 cut(s)	94, 124
Sau96I	GGNCC	2 cut(s)	94, 124
ScrFI	CCNGG	2 cut(s)	107, 236
SduI	GDGCHC	1 cut(s)	69
SetI	ASST	4 cut(s)	32, 149, 237, 311
SexAI	ACCWGGT	1 cut(s)	234
SinI	GGWCC	2 cut(s)	94, 124
Sse9I	AATT	1 cut(s)	83
SsiI	CCGC	2 cut(s)	40, 179
SspMI	CTAG	1 cut(s)	332
StyD4I	CCNGG	2 cut(s)	105, 234
StyI	CCWWGG	2 cut(s)	47, 90
TaiI	ACGT	1 cut(s)	149
TasI	AATT	1 cut(s)	83
TfiI	GAWTC	2 cut(s)	137, 323
TscAI	CASTG	1 cut(s)	19
TseFI	GTSAC	1 cut(s)	8
Tsp45I	GTSAC	1 cut(s)	8
TspDTI	ATGAA	1 cut(s)	116
TspGWI	ACGGA	1 cut(s)	287
TspRI	CASTG	1 cut(s)	19
VpaK11BI	GGWCC	2 cut(s)	94, 124
XceI	RCATGY	1 cut(s)	79
XmiI	GTMKAC	1 cut(s)	152
XmnI	GAANNNNTTC	1 cut(s)	322
XspI	CTAG	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.