Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0002072

Physical Location & Seq

Genomic Coordinates Forward (+)

10962616 .. 10963245

Gene Structure 630 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G102300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGAAGAGAAAGAGGCCTCAACAACACTAACCCTTGGCCCTGCAACTCCATGCCCACAAGAGAAAGTTTCAACAGAGCTTGGCCTTGCAGCTCCATGCCCACAAGATGAAGTTTCAACAGAGTTGACTTTGTGGACCACAAATAAGAAGAAGAGAAAACCAGAGACAGAGTGCCCTGTTCCGAGGAAGAAAACAAACACGAATTTGGTCTCTTGGCTGAAACCTAGTGAGGCTTGGGAAATCAAGAAGACACTCACGCCTAGTGATCTCGAAAACTTGCTAATTGTGGAAACAAATTTTATCGAGAACCAGGTTATGTCTTTCTTGGGTGACACGTTTTCCAAAAGGGTACTTGAGAGCAAGTATGGCGCCCGAGTCACAGTTCACGACCGCGATACATTTTCGAAGCATCGAATGGTTTTAAAGCTGCGCGATTCGCCTAGGAGGAGTTACATTTTGGATGAAGATTGGCAGCAGGAGTTTGTGAAGAGGAGAGAATTGAAGGAGGGTGATGAGATTGGAGTTGGCTGGTACACACCCTCAAATGTTCCTTCCAAAGCCATGTTCACTTTTTCGGTACTTAAACGGGCAGGCCAACCTGCACCTCTTCATGATCAGGAATCAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

210

Amino Acids

23.87

Weight (kDa)

6.85

Isoelectric Point (pI)

56.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78635 AT1G78640 AT2G33720
fragaria_vesca	FvH4_3g33791 FvH4_3g37630
malus_domestica	MD14G1106900.v1.1
prunus_persica	Prupe.5G092200_v2.0.a1 Prupe.5G102200_v2.0.a1 Prupe.5G102300_v2.0.a1 Prupe.5G102400_v2.0.a1 Prupe.5G102500_v2.0.a1
pyrus_communis	pycom05g30850 pycom05g30870 pycom14g10060
rosa_chinensis	RchiOBHm_Chr2g0116441
rosa_laevigata	RLG00000003924 RLG00000018270 RLG00000035460 RLG00000035470
rosa_multiflora	Rmu_sc0000338.1_g000013 Rmu_sc0000689.1_g000016 Rmu_sc0001164.1_g000007 Rmu_sc0004191.1_g000056 Rmu_sc0019528.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019310 Rroxscaffold_1G00019370 Rroxscaffold_5G00379640
rosa_rugosa	Rorug05G0141100 Rorug05G0339700
rosa_samantha	Rh2AG262200 Rh2CG268400 Rh2CG268500 Rh2DG270400 Rh5AG402000 Rh5BG019500 Rh5BG414100 Rh5CG438600 Rh5DG428700 Rh7AG166100 Rh7BG168200 Rh7CG174500 Rh7DG167800
rosa_wichuraiana	Rw5G037840 Rw7G014460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	607
AccB1I	GGYRCC	1 cut(s)	368
AccII	CGCG	2 cut(s)	393, 432
AciI	CCGC	1 cut(s)	391
AcsI	RAATTY	2 cut(s)	202, 295
AcyI	GRCGYC	1 cut(s)	369
AfaI	GTAC	3 cut(s)	351, 533, 579
AflIII	ACRYGT	1 cut(s)	333
AgsI	TTSAA	3 cut(s)	72, 117, 502
AjnI	CCWGG	1 cut(s)	309
AjuI	GAANNNNNNNTTGG	2 cut(s)	548, 580
AluBI	AGCT	3 cut(s)	79, 92, 427
AluI	AGCT	3 cut(s)	79, 92, 427
Alw26I	GTCTC	2 cut(s)	158, 214
Ama87I	CYCGRG	1 cut(s)	372
AoxI	GGCC	4 cut(s)	15, 37, 82, 592
ApeKI	GCWGC	3 cut(s)	89, 427, 472
ApoI	RAATTY	2 cut(s)	202, 295
AspA2I	CCTAGG	1 cut(s)	440
AspLEI	GCGC	2 cut(s)	371, 432
AspS9I	GGNCC	2 cut(s)	38, 135
AsuHPI	GGTGA	2 cut(s)	341, 521
AsuII	TTCGAA	1 cut(s)	404
AvaI	CYCGRG	1 cut(s)	372
AvaII	GGWCC	1 cut(s)	135
AvrII	CCTAGG	1 cut(s)	440
BaeGI	GKGCMC	1 cut(s)	176
BanI	GGYRCC	1 cut(s)	368
BbsI	GAAGAC	1 cut(s)	254
BbvI	GCAGC	3 cut(s)	101, 414, 484
BciT130I	CCWGG	1 cut(s)	311
BclI	TGATCA	1 cut(s)	613
BcoDI	GTCTC	2 cut(s)	158, 214
BfaI	CTAG	3 cut(s)	225, 261, 441
BfoI	RGCGCY	1 cut(s)	372
BfuAI	ACCTGC	1 cut(s)	607
BisI	GCNGC	3 cut(s)	90, 428, 473
BlnI	CCTAGG	1 cut(s)	440
BlsI	GCNGC	3 cut(s)	91, 429, 474
Bme1390I	CCNGG	1 cut(s)	311
Bme18I	GGWCC	1 cut(s)	135
BmeT110I	CYCGRG	1 cut(s)	372
BmgT120I	GGNCC	2 cut(s)	38, 135
BmiI	GGNNCC	1 cut(s)	370
BmrFI	CCNGG	1 cut(s)	311
BmsI	GCATC	1 cut(s)	418
BpiI	GAAGAC	1 cut(s)	254
Bpu14I	TTCGAA	1 cut(s)	404
BpuEI	CTTGAG	1 cut(s)	374
BsaHI	GRCGYC	1 cut(s)	369
BsaI	GGTCTC	1 cut(s)	214
BsaJI	CCNNGG	3 cut(s)	34, 182, 440
BseBI	CCWGG	1 cut(s)	311
BseDI	CCNNGG	3 cut(s)	34, 182, 440
BseGI	GGATG	1 cut(s)	466
BseRI	GAGGAG	2 cut(s)	460, 505
BseSI	GKGCMC	1 cut(s)	176
BseXI	GCAGC	3 cut(s)	101, 414, 484
BsgI	GTGCAG	1 cut(s)	585
Bsh1236I	CGCG	2 cut(s)	393, 432
Bsh1285I	CGRYCG	1 cut(s)	391
BshFI	GGCC	4 cut(s)	17, 39, 84, 594
BshNI	GGYRCC	1 cut(s)	368
BsiEI	CGRYCG	1 cut(s)	391
BsiHKCI	CYCGRG	1 cut(s)	372
BsmAI	GTCTC	2 cut(s)	158, 214
BsnI	GGCC	4 cut(s)	17, 39, 84, 594
Bso31I	GGTCTC	1 cut(s)	214
BsoBI	CYCGRG	1 cut(s)	372
Bsp119I	TTCGAA	1 cut(s)	404
Bsp1286I	GDGCHC	1 cut(s)	176
Bsp143I	GATC	2 cut(s)	265, 613
BspACI	CCGC	1 cut(s)	391
BspANI	GGCC	4 cut(s)	17, 39, 84, 594
BspFNI	CGCG	2 cut(s)	393, 432
BspHI	TCATGA	1 cut(s)	610
BspLI	GGNNCC	1 cut(s)	370
BspMI	ACCTGC	1 cut(s)	607
BspT104I	TTCGAA	1 cut(s)	404
BspT107I	GGYRCC	1 cut(s)	368
BspTNI	GGTCTC	1 cut(s)	214
BssECI	CCNNGG	3 cut(s)	34, 182, 440
BssMI	GATC	2 cut(s)	265, 613
BssNI	GRCGYC	1 cut(s)	369
BssT1I	CCWWGG	2 cut(s)	34, 440
Bst2UI	CCWGG	1 cut(s)	311
Bst4CI	ACNGT	1 cut(s)	382
Bst6I	CTCTTC	3 cut(s)	146, 482, 612
BstACI	GRCGYC	1 cut(s)	369
BstBI	TTCGAA	1 cut(s)	404
BstC8I	GCNNGC	1 cut(s)	592
BstF5I	GGATG	1 cut(s)	466
BstFNI	CGCG	2 cut(s)	393, 432
BstH2I	RGCGCY	1 cut(s)	372
BstHHI	GCGC	2 cut(s)	371, 432
BstKTI	GATC	2 cut(s)	268, 616
BstMAI	GTCTC	2 cut(s)	158, 214
BstMBI	GATC	2 cut(s)	265, 613
BstMCI	CGRYCG	1 cut(s)	391
BstMWI	GCNNNNNNNGC	2 cut(s)	366, 436
BstNI	CCWGG	1 cut(s)	311
BstSCI	CCNGG	1 cut(s)	309
BstSLI	GKGCMC	1 cut(s)	176
BstUI	CGCG	2 cut(s)	393, 432
BstV1I	GCAGC	3 cut(s)	101, 414, 484
BstV2I	GAAGAC	1 cut(s)	254
BsuRI	GGCC	4 cut(s)	17, 39, 84, 594
BtsCI	GGATG	1 cut(s)	466
BveI	ACCTGC	1 cut(s)	607
Cac8I	GCNNGC	1 cut(s)	592
CciI	TCATGA	1 cut(s)	610
CfoI	GCGC	2 cut(s)	371, 432
Cfr13I	GGNCC	2 cut(s)	38, 135
CsiI	ACCWGGT	1 cut(s)	309
Csp6I	GTAC	3 cut(s)	350, 532, 578
CviAII	CATG	4 cut(s)	51, 96, 562, 611
CviQI	GTAC	3 cut(s)	350, 532, 578
DinI	GGCGCC	1 cut(s)	370
DpnI	GATC	2 cut(s)	267, 615
DpnII	GATC	2 cut(s)	265, 613
DraI	TTTAAA	1 cut(s)	423
Eam1104I	CTCTTC	3 cut(s)	146, 482, 612
EarI	CTCTTC	3 cut(s)	146, 482, 612
Eco130I	CCWWGG	2 cut(s)	34, 440
Eco147I	AGGCCT	1 cut(s)	17
Eco31I	GGTCTC	1 cut(s)	214
Eco47I	GGWCC	1 cut(s)	135
Eco88I	CYCGRG	1 cut(s)	372
EcoRII	CCWGG	1 cut(s)	309
EcoT14I	CCWWGG	2 cut(s)	34, 440
EgeI	GGCGCC	1 cut(s)	370
EheI	GGCGCC	1 cut(s)	370
ErhI	CCWWGG	2 cut(s)	34, 440
FaeI	CATG	4 cut(s)	54, 99, 565, 614
FaiI	YATR	6 cut(s)	52, 97, 317, 366, 563, 612
FatI	CATG	4 cut(s)	50, 95, 561, 610
FbaI	TGATCA	1 cut(s)	613
Fnu4HI	GCNGC	3 cut(s)	90, 428, 473
FokI	GGATG	1 cut(s)	473
Fsp4HI	GCNGC	3 cut(s)	90, 428, 473
FspBI	CTAG	3 cut(s)	225, 261, 441
GlaI	GCGC	2 cut(s)	370, 431
GluI	GCNGC	3 cut(s)	90, 428, 473
HaeII	RGCGCY	1 cut(s)	372
HaeIII	GGCC	4 cut(s)	17, 39, 84, 594
HhaI	GCGC	2 cut(s)	371, 432
Hin1I	GRCGYC	1 cut(s)	369
Hin1II	CATG	4 cut(s)	54, 99, 565, 614
Hin6I	GCGC	2 cut(s)	369, 430
HinP1I	GCGC	2 cut(s)	369, 430
HincII	GTYRAC	1 cut(s)	126
HindII	GTYRAC	1 cut(s)	126
HinfI	GANTC	3 cut(s)	375, 434, 620
HphI	GGTGA	2 cut(s)	341, 521
Hpy166II	GTNNAC	5 cut(s)	126, 135, 385, 534, 567
Hpy188I	TCNGA	1 cut(s)	183
Hpy188III	TCNNGA	6 cut(s)	244, 269, 304, 386, 611, 617
Hpy8I	GTNNAC	5 cut(s)	126, 135, 385, 534, 567
HpyAV	CCTTC	2 cut(s)	496, 561
HpyCH4III	ACNGT	1 cut(s)	382
HpyCH4IV	ACGT	1 cut(s)	335
HpyCH4V	TGCA	3 cut(s)	44, 89, 602
HpyF10VI	GCNNNNNNNGC	2 cut(s)	366, 436
HpySE526I	ACGT	1 cut(s)	335
Hsp92I	GRCGYC	1 cut(s)	369
Hsp92II	CATG	4 cut(s)	54, 99, 565, 614
HspAI	GCGC	2 cut(s)	369, 430
KasI	GGCGCC	1 cut(s)	368
Ksp22I	TGATCA	1 cut(s)	613
Kzo9I	GATC	2 cut(s)	265, 613
LmnI	GCTCC	1 cut(s)	97
Lsp1109I	GCAGC	3 cut(s)	101, 414, 484
LweI	GCATC	1 cut(s)	418
MabI	ACCWGGT	1 cut(s)	309
MaeI	CTAG	3 cut(s)	225, 261, 441
MaeII	ACGT	1 cut(s)	335
MaeIII	GTNAC	3 cut(s)	329, 376, 449
MalI	GATC	2 cut(s)	267, 615
MboI	GATC	2 cut(s)	265, 613
MboII	GAAGA	8 cut(s)	17, 160, 163, 199, 259, 476, 499, 599
MhlI	GDGCHC	1 cut(s)	176
MluCI	AATT	4 cut(s)	202, 282, 295, 497
Mly113I	GGCGCC	1 cut(s)	369
MlyI	GAGTC	1 cut(s)	384
MnlI	CCTC	9 cut(s)	7, 28, 177, 223, 438, 483, 499, 550, 615
MseI	TTAA	3 cut(s)	422, 582, 628
MspR9I	CCNGG	1 cut(s)	311
MvaI	CCWGG	1 cut(s)	311
MvnI	CGCG	2 cut(s)	393, 432
MwoI	GCNNNNNNNGC	2 cut(s)	366, 436
NarI	GGCGCC	1 cut(s)	369
NdeII	GATC	2 cut(s)	265, 613
NlaIII	CATG	4 cut(s)	54, 99, 565, 614
NlaIV	GGNNCC	1 cut(s)	370
NmuCI	GTSAC	2 cut(s)	329, 376
NspV	TTCGAA	1 cut(s)	404
PagI	TCATGA	1 cut(s)	610
PceI	AGGCCT	1 cut(s)	17
PfeI	GAWTC	2 cut(s)	434, 620
PkrI	GCNGC	3 cut(s)	91, 429, 474
PleI	GAGTC	1 cut(s)	383
PluTI	GGCGCC	1 cut(s)	372
PpsI	GAGTC	1 cut(s)	383
Psp6I	CCWGG	1 cut(s)	309
PspGI	CCWGG	1 cut(s)	309
PspN4I	GGNNCC	1 cut(s)	370
PspPI	GGNCC	2 cut(s)	38, 135
RsaI	GTAC	3 cut(s)	351, 533, 579
RsaNI	GTAC	3 cut(s)	350, 532, 578
SaqAI	TTAA	3 cut(s)	422, 582, 628
SatI	GCNGC	3 cut(s)	90, 428, 473
Sau3AI	GATC	2 cut(s)	265, 613
Sau96I	GGNCC	2 cut(s)	38, 135
SchI	GAGTC	1 cut(s)	384
ScrFI	CCNGG	1 cut(s)	311
SduI	GDGCHC	1 cut(s)	176
SetI	ASST	8 cut(s)	81, 94, 226, 315, 338, 429, 601, 607
SexAI	ACCWGGT	1 cut(s)	309
SfaNI	GCATC	1 cut(s)	418
SfoI	GGCGCC	1 cut(s)	370
SfuI	TTCGAA	1 cut(s)	404
SinI	GGWCC	1 cut(s)	135
SmlI	CTYRAG	1 cut(s)	353
SmoI	CTYRAG	1 cut(s)	353
Sse9I	AATT	4 cut(s)	202, 282, 295, 497
SseBI	AGGCCT	1 cut(s)	17
SsiI	CCGC	1 cut(s)	391
SspDI	GGCGCC	1 cut(s)	368
SspMI	CTAG	3 cut(s)	225, 261, 441
StuI	AGGCCT	1 cut(s)	17
StyD4I	CCNGG	1 cut(s)	309
StyI	CCWWGG	2 cut(s)	34, 440
TaaI	ACNGT	1 cut(s)	382
TaiI	ACGT	1 cut(s)	338
TaqI	TCGA	4 cut(s)	270, 303, 404, 412
TasI	AATT	4 cut(s)	202, 282, 295, 497
TfiI	GAWTC	2 cut(s)	434, 620
Tru1I	TTAA	3 cut(s)	422, 582, 628
Tru9I	TTAA	3 cut(s)	422, 582, 628
TseFI	GTSAC	2 cut(s)	329, 376
TseI	GCWGC	3 cut(s)	89, 427, 472
Tsp45I	GTSAC	2 cut(s)	329, 376
TspDTI	ATGAA	3 cut(s)	123, 477, 599
VpaK11BI	GGWCC	1 cut(s)	135
XapI	RAATTY	2 cut(s)	202, 295
XmaJI	CCTAGG	1 cut(s)	440
XspI	CTAG	3 cut(s)	225, 261, 441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.