Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0002072

Physical Location & Seq

Genomic Coordinates Reverse (-)

29270720 .. 29271274

Gene Structure 555 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g33791.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGCTGAAACACTTCTCTTTCCATCTCTGTTTGCTTCAACAAGGGTGCAAGACCAACCATGTCAACTCAACCAAGCTGACAACAGAGGTCTCGACCTGGGGCTAAGTCTGGGCTCCATTGACTACGACCCATGGACCATCAAGAAGAAGCTGACGGTCAGCGACCTCGGCGACTTGAGCAGGCTTTTGGTGCCCAAGACTTTAACACAGAAAAAAGTTTTGCCGTTGATGAACAAGAGCTTGGACGAAAGGGTCCACAGTAGCGACGGGGGAACGGTCACCGTTTACGACAGTGATATGAAAACGAAGCATGAGTTGGTCTTCAAATACTGGCCGTCGTGCAAGAGTTACGTTCTGCAAGCAAACTGGAAGAAGGAGTTTGTGAATGTGAGGAAGCTAAAGGAAGGTGATCTGATTGGGCTCTATTGGGATGCACGCAGTTCTGCTTTTGTGTTTTCGCTTCTTCAACGAGCACTGAAGATCGATACTACTGTCGCCTGTCGGTACTGTTGGATATTGGAGGAACTAAATGAGATATTGGAGGAAATTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

185

Amino Acids

21.08

Weight (kDa)

7.61

Isoelectric Point (pI)

33.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	49 - 156	4.5e-07	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78635 AT1G78640 AT2G33720
fragaria_vesca	FvH4_3g33791 FvH4_3g37630
malus_domestica	MD14G1106900.v1.1
prunus_persica	Prupe.5G092200_v2.0.a1 Prupe.5G102200_v2.0.a1 Prupe.5G102300_v2.0.a1 Prupe.5G102400_v2.0.a1 Prupe.5G102500_v2.0.a1
pyrus_communis	pycom05g30850 pycom05g30870 pycom14g10060
rosa_chinensis	RchiOBHm_Chr2g0116441
rosa_laevigata	RLG00000003924 RLG00000018270 RLG00000035460 RLG00000035470
rosa_multiflora	Rmu_sc0000338.1_g000013 Rmu_sc0000689.1_g000016 Rmu_sc0001164.1_g000007 Rmu_sc0004191.1_g000056 Rmu_sc0019528.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019310 Rroxscaffold_1G00019370 Rroxscaffold_5G00379640
rosa_rugosa	Rorug05G0141100 Rorug05G0339700
rosa_samantha	Rh2AG262200 Rh2CG268400 Rh2CG268500 Rh2DG270400 Rh5AG402000 Rh5BG019500 Rh5BG414100 Rh5CG438600 Rh5DG428700 Rh7AG166100 Rh7BG168200 Rh7CG174500 Rh7DG167800
rosa_wichuraiana	Rw5G037840 Rw7G014460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	251
AccB1I	GGYRCC	1 cut(s)	190
AcoI	YGGCCR	1 cut(s)	332
AcuI	CTGAAG	1 cut(s)	497
AfaI	GTAC	1 cut(s)	506
AgsI	TTSAA	3 cut(s)	39, 325, 467
AjnI	CCWGG	1 cut(s)	96
AjuI	GAANNNNNNNTTGG	4 cut(s)	224, 256, 299, 331
AluBI	AGCT	4 cut(s)	77, 151, 240, 397
AluI	AGCT	4 cut(s)	77, 151, 240, 397
Alw21I	GWGCWC	1 cut(s)	475
Alw26I	GTCTC	1 cut(s)	95
AoxI	GGCC	1 cut(s)	332
Asp700I	GAANNNNTTC	1 cut(s)	12
AspS9I	GGNCC	2 cut(s)	135, 253
AsuHPI	GGTGA	2 cut(s)	271, 419
AvaII	GGWCC	2 cut(s)	135, 253
BaeGI	GKGCMC	1 cut(s)	195
BaeI	ACNNNNGTAYC	2 cut(s)	477, 510
BanI	GGYRCC	1 cut(s)	190
BanII	GRGCYC	2 cut(s)	116, 423
BbsI	GAAGAC	1 cut(s)	313
Bbv12I	GWGCWC	1 cut(s)	475
BccI	CCATC	2 cut(s)	31, 146
BceAI	ACGGC	2 cut(s)	208, 319
BciT130I	CCWGG	1 cut(s)	98
BcoDI	GTCTC	1 cut(s)	95
Bme1390I	CCNGG	1 cut(s)	98
Bme18I	GGWCC	2 cut(s)	135, 253
BmgT120I	GGNCC	2 cut(s)	135, 253
BmiI	GGNNCC	3 cut(s)	115, 192, 254
BmrFI	CCNGG	1 cut(s)	98
BmsI	GCATC	1 cut(s)	421
BpiI	GAAGAC	1 cut(s)	313
BpuEI	CTTGAG	1 cut(s)	196
Bsa29I	ATCGAT	1 cut(s)	483
BsaI	GGTCTC	1 cut(s)	95
BsaJI	CCNNGG	3 cut(s)	97, 131, 166
Bse1I	ACTGG	2 cut(s)	335, 371
BseBI	CCWGG	1 cut(s)	98
BseCI	ATCGAT	1 cut(s)	483
BseDI	CCNNGG	3 cut(s)	97, 131, 166
BseGI	GGATG	1 cut(s)	436
BseNI	ACTGG	2 cut(s)	335, 371
BseSI	GKGCMC	1 cut(s)	195
BshFI	GGCC	1 cut(s)	334
BshNI	GGYRCC	1 cut(s)	190
BshVI	ATCGAT	1 cut(s)	483
BsiHKAI	GWGCWC	1 cut(s)	475
BsmAI	GTCTC	1 cut(s)	95
BsnI	GGCC	1 cut(s)	334
Bso31I	GGTCTC	1 cut(s)	95
Bsp1286I	GDGCHC	4 cut(s)	116, 195, 423, 475
Bsp143I	GATC	2 cut(s)	409, 480
Bsp19I	CCATGG	1 cut(s)	131
BspANI	GGCC	1 cut(s)	334
BspDI	ATCGAT	1 cut(s)	483
BspLI	GGNNCC	3 cut(s)	115, 192, 254
BspT107I	GGYRCC	1 cut(s)	190
BspTNI	GGTCTC	1 cut(s)	95
BsrI	ACTGG	2 cut(s)	335, 371
BssECI	CCNNGG	3 cut(s)	97, 131, 166
BssMI	GATC	2 cut(s)	409, 480
BssT1I	CCWWGG	1 cut(s)	131
Bst2UI	CCWGG	1 cut(s)	98
Bst4CI	ACNGT	7 cut(s)	157, 260, 277, 283, 293, 493, 509
BstC8I	GCNNGC	3 cut(s)	182, 360, 436
BstDEI	CTNAG	1 cut(s)	104
BstDSI	CCRYGG	1 cut(s)	131
BstEII	GGTNACC	1 cut(s)	277
BstF5I	GGATG	1 cut(s)	436
BstKTI	GATC	2 cut(s)	412, 483
BstMAI	GTCTC	1 cut(s)	95
BstMBI	GATC	2 cut(s)	409, 480
BstMWI	GCNNNNNNNGC	3 cut(s)	168, 177, 190
BstNI	CCWGG	1 cut(s)	98
BstPI	GGTNACC	1 cut(s)	277
BstSCI	CCNGG	1 cut(s)	96
BstSLI	GKGCMC	1 cut(s)	195
BstV2I	GAAGAC	1 cut(s)	313
Bsu15I	ATCGAT	1 cut(s)	483
BsuRI	GGCC	1 cut(s)	334
BsuTUI	ATCGAT	1 cut(s)	483
BtgI	CCRYGG	1 cut(s)	131
BtsCI	GGATG	1 cut(s)	436
BtsIMutI	CAGTG	2 cut(s)	298, 473
Cac8I	GCNNGC	3 cut(s)	182, 360, 436
Cfr13I	GGNCC	2 cut(s)	135, 253
ClaI	ATCGAT	1 cut(s)	483
Csp6I	GTAC	1 cut(s)	505
CviAII	CATG	3 cut(s)	60, 132, 311
CviQI	GTAC	1 cut(s)	505
DdeI	CTNAG	1 cut(s)	104
DpnI	GATC	2 cut(s)	411, 482
DpnII	GATC	2 cut(s)	409, 480
DrdI	GACNNNNNNGTC	1 cut(s)	251
DseDI	GACNNNNNNGTC	1 cut(s)	251
EaeI	YGGCCR	1 cut(s)	332
Eco130I	CCWWGG	1 cut(s)	131
Eco24I	GRGCYC	2 cut(s)	116, 423
Eco31I	GGTCTC	1 cut(s)	95
Eco47I	GGWCC	2 cut(s)	135, 253
Eco57I	CTGAAG	1 cut(s)	497
Eco91I	GGTNACC	1 cut(s)	277
EcoO65I	GGTNACC	1 cut(s)	277
EcoRII	CCWGG	1 cut(s)	96
EcoT14I	CCWWGG	1 cut(s)	131
EcoT38I	GRGCYC	2 cut(s)	116, 423
ErhI	CCWWGG	1 cut(s)	131
FaeI	CATG	3 cut(s)	63, 135, 314
FaiI	YATR	4 cut(s)	61, 133, 299, 312
FatI	CATG	3 cut(s)	59, 131, 310
FokI	GGATG	1 cut(s)	443
FriOI	GRGCYC	2 cut(s)	116, 423
HaeIII	GGCC	1 cut(s)	334
Hin1II	CATG	3 cut(s)	63, 135, 314
HincII	GTYRAC	1 cut(s)	65
HindII	GTYRAC	1 cut(s)	65
HphI	GGTGA	2 cut(s)	271, 419
Hpy166II	GTNNAC	3 cut(s)	65, 256, 286
Hpy188I	TCNGA	1 cut(s)	414
Hpy188III	TCNNGA	2 cut(s)	92, 142
Hpy8I	GTNNAC	3 cut(s)	65, 256, 286
Hpy99I	CGWCG	2 cut(s)	269, 340
HpyAV	CCTTC	2 cut(s)	367, 398
HpyCH4III	ACNGT	7 cut(s)	157, 260, 277, 283, 293, 493, 509
HpyCH4IV	ACGT	1 cut(s)	351
HpyCH4V	TGCA	4 cut(s)	49, 342, 358, 434
HpyF10VI	GCNNNNNNNGC	3 cut(s)	168, 177, 190
HpyF3I	CTNAG	1 cut(s)	104
HpySE526I	ACGT	1 cut(s)	351
Hsp92II	CATG	3 cut(s)	63, 135, 314
Kzo9I	GATC	2 cut(s)	409, 480
LmnI	GCTCC	1 cut(s)	119
LpnPI	CCDG	7 cut(s)	83, 95, 110, 166, 316, 352, 511
LweI	GCATC	1 cut(s)	421
MaeII	ACGT	1 cut(s)	351
MaeIII	GTNAC	2 cut(s)	277, 347
MalI	GATC	2 cut(s)	411, 482
MboI	GATC	2 cut(s)	409, 480
MboII	GAAGA	5 cut(s)	157, 313, 382, 455, 490
MhlI	GDGCHC	4 cut(s)	116, 195, 423, 475
MluCI	AATT	1 cut(s)	546
MmeI	TCCRAC	1 cut(s)	491
MnlI	CCTC	5 cut(s)	80, 176, 384, 514, 535
MroXI	GAANNNNTTC	1 cut(s)	12
MseI	TTAA	2 cut(s)	203, 549
MspR9I	CCNGG	1 cut(s)	98
MvaI	CCWGG	1 cut(s)	98
MwoI	GCNNNNNNNGC	3 cut(s)	168, 177, 190
NcoI	CCATGG	1 cut(s)	131
NdeII	GATC	2 cut(s)	409, 480
NlaIII	CATG	3 cut(s)	63, 135, 314
NlaIV	GGNNCC	3 cut(s)	115, 192, 254
NmeAIII	GCCGAG	1 cut(s)	147
NmuCI	GTSAC	1 cut(s)	277
PdmI	GAANNNNTTC	1 cut(s)	12
Psp6I	CCWGG	1 cut(s)	96
PspEI	GGTNACC	1 cut(s)	277
PspGI	CCWGG	1 cut(s)	96
PspN4I	GGNNCC	3 cut(s)	115, 192, 254
PspPI	GGNCC	2 cut(s)	135, 253
RsaI	GTAC	1 cut(s)	506
RsaNI	GTAC	1 cut(s)	505
SaqAI	TTAA	2 cut(s)	203, 549
Sau3AI	GATC	2 cut(s)	409, 480
Sau96I	GGNCC	2 cut(s)	135, 253
ScrFI	CCNGG	1 cut(s)	98
SduI	GDGCHC	4 cut(s)	116, 195, 423, 475
SetI	ASST	9 cut(s)	79, 91, 99, 153, 168, 242, 354, 399, 409
SfaNI	GCATC	1 cut(s)	421
SinI	GGWCC	2 cut(s)	135, 253
SmlI	CTYRAG	1 cut(s)	175
SmoI	CTYRAG	1 cut(s)	175
Sse9I	AATT	1 cut(s)	546
StyD4I	CCNGG	1 cut(s)	96
StyI	CCWWGG	1 cut(s)	131
TaaI	ACNGT	7 cut(s)	157, 260, 277, 283, 293, 493, 509
TaiI	ACGT	1 cut(s)	354
TaqI	TCGA	2 cut(s)	93, 483
TasI	AATT	1 cut(s)	546
Tru1I	TTAA	2 cut(s)	203, 549
Tru9I	TTAA	2 cut(s)	203, 549
TscAI	CASTG	2 cut(s)	298, 480
TseFI	GTSAC	1 cut(s)	277
Tsp45I	GTSAC	1 cut(s)	277
TspDTI	ATGAA	2 cut(s)	245, 314
TspRI	CASTG	2 cut(s)	298, 480
VpaK11BI	GGWCC	2 cut(s)	135, 253
XmnI	GAANNNNTTC	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.