Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002072

Physical Location & Seq

Genomic Coordinates Reverse (-)

29581170 .. 29581988

Gene Structure 819 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G78640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGCCGAAGAACAGCGAGAGATTTCTCATGAGAACAACGTTTCCTTGGGATCCGCGGAAACAGCAATACCTCTCACCAACGTTTCTATATCTCCGACGAAGAAGGAAGAACAAAAAACTGTATACCTGGTCCTGTTCGGAAGAACAATTTATGTGGAGTCCTCTTCTTTGGAATCCGAGGAAACGGTGATGCCTATTGTCGACGTTCCTAAATCTCCGGCGAAGGAAGACTTGACGACTCATTGCTCGTTAGACGCGGAATCCTCGGAGAAAGGCTTCCCCGTAGATCCCTATATGGGGATTTTAGGAAACAACCCTAATATTAATTCCAATGTTACTTGTGCAGGAAACAAAGATTTAACTGAAGATATTATAAAGTTTAAGAAGATGAGATCTCTTTCGAAAGAGAAAATAGTAGAGGAGAAGGGAACCAGAGTCTTGACGGAACTACCTCCCTACACATGGACCATCAAGAAGACACTGAAGGAAAGTGATATCAATCATCAATGCCGACTTTTGCTGAACACAACCGATGCCGAGAACCACATCATGAGACATCTCCCTACAGATGACCAAAAGAAAATCCAAGAAGGCATTGGAGTCGATGTTAAAGCGTACGACCACGACACGTACACTGAGCACGATATGGTTTTCAAGAGACACGTCAAAACATCAAAAAGCTATGTTTTCAACGGTGGCTGGGCTAAAGCGTTTGTTGGGAGGAGAGAATTGAAGGAAGGAGACAAGATTGGACTCTTTTGGGGTAATGTTGACTCTAGAATCCACTTTAGTGTGCTTGAGAGAAAAATCCCTAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

272

Amino Acids

30.79

Weight (kDa)

6.03

Isoelectric Point (pI)

38.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78635 AT1G78640 AT2G33720
fragaria_vesca	FvH4_3g33791 FvH4_3g37630
malus_domestica	MD14G1106900.v1.1
prunus_persica	Prupe.5G092200_v2.0.a1 Prupe.5G102200_v2.0.a1 Prupe.5G102300_v2.0.a1 Prupe.5G102400_v2.0.a1 Prupe.5G102500_v2.0.a1
pyrus_communis	pycom05g30850 pycom05g30870 pycom14g10060
rosa_chinensis	RchiOBHm_Chr2g0116441
rosa_laevigata	RLG00000003924 RLG00000018270 RLG00000035460 RLG00000035470
rosa_multiflora	Rmu_sc0000338.1_g000013 Rmu_sc0000689.1_g000016 Rmu_sc0001164.1_g000007 Rmu_sc0004191.1_g000056 Rmu_sc0019528.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019310 Rroxscaffold_1G00019370 Rroxscaffold_5G00379640
rosa_rugosa	Rorug05G0141100 Rorug05G0339700
rosa_samantha	Rh2AG262200 Rh2CG268400 Rh2CG268500 Rh2DG270400 Rh5AG402000 Rh5BG019500 Rh5BG414100 Rh5CG438600 Rh5DG428700 Rh7AG166100 Rh7BG168200 Rh7CG174500 Rh7DG167800
rosa_wichuraiana	Rw5G037840 Rw7G014460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	374
AccI	GTMKAC	2 cut(s)	123, 201
AccII	CGCG	2 cut(s)	56, 257
AciI	CCGC	3 cut(s)	54, 56, 257
AclI	AACGTT	2 cut(s)	39, 81
AclWI	GGATC	3 cut(s)	45, 58, 281
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	2 cut(s)	384, 503
AfaI	GTAC	2 cut(s)	617, 632
AfiI	CCNNNNNNNGG	3 cut(s)	296, 297, 462
AflIII	ACRYGT	2 cut(s)	627, 661
AgsI	TTSAA	3 cut(s)	655, 691, 733
AjiI	CACGTC	1 cut(s)	664
AjnI	CCWGG	1 cut(s)	126
AleI	CACNNNNGTG	1 cut(s)	789
AloI	GAACNNNNNNTCC	2 cut(s)	26, 58
AluBI	AGCT	1 cut(s)	681
AluI	AGCT	1 cut(s)	681
Alw21I	GWGCWC	1 cut(s)	642
Alw26I	GTCTC	3 cut(s)	547, 652, 735
AlwI	GGATC	3 cut(s)	45, 58, 281
AoxI	GGCC	1 cut(s)	3
AseI	ATTAAT	1 cut(s)	324
Asp700I	GAANNNNTTC	1 cut(s)	275
AspS9I	GGNCC	2 cut(s)	130, 465
AsuHPI	GGTGA	2 cut(s)	67, 199
AsuII	TTCGAA	1 cut(s)	401
AvaII	GGWCC	2 cut(s)	130, 465
BamHI	GGATCC	1 cut(s)	50
BbsI	GAAGAC	2 cut(s)	234, 482
Bbv12I	GWGCWC	1 cut(s)	642
BccI	CCATC	1 cut(s)	476
BcgI	CGANNNNNNTGC	2 cut(s)	583, 617
BciT130I	CCWGG	1 cut(s)	128
BcoDI	GTCTC	3 cut(s)	547, 652, 735
BfaI	CTAG	2 cut(s)	777, 817
BfmI	CTRYAG	1 cut(s)	564
BglII	AGATCT	1 cut(s)	392
Bme1390I	CCNGG	1 cut(s)	128
Bme18I	GGWCC	2 cut(s)	130, 465
BmgBI	CACGTC	1 cut(s)	664
BmgT120I	GGNCC	2 cut(s)	130, 465
BmiI	GGNNCC	2 cut(s)	52, 430
BmrFI	CCNGG	1 cut(s)	128
BmsI	GCATC	2 cut(s)	180, 523
BpiI	GAAGAC	2 cut(s)	234, 482
Bpu14I	TTCGAA	1 cut(s)	401
BpuEI	CTTGAG	1 cut(s)	818
BsaAI	YACGTR	1 cut(s)	630
BsaBI	GATNNNNATC	1 cut(s)	498
BsaJI	CCNNGG	4 cut(s)	45, 54, 177, 264
BsaXI	ACNNNNNCTCC	2 cut(s)	591, 621
Bsc4I	CCNNNNNNNGG	3 cut(s)	296, 297, 462
Bse3DI	GCAATG	1 cut(s)	241
Bse8I	GATNNNNATC	1 cut(s)	498
BseBI	CCWGG	1 cut(s)	128
BseDI	CCNNGG	4 cut(s)	45, 54, 177, 264
BseJI	GATNNNNATC	1 cut(s)	498
BseLI	CCNNNNNNNGG	3 cut(s)	296, 297, 462
BseMI	GCAATG	1 cut(s)	241
BseMII	CTCAG	1 cut(s)	627
BseRI	GAGGAG	2 cut(s)	434, 736
BseYI	CCCAGC	1 cut(s)	699
BsgI	GTGCAG	1 cut(s)	363
Bsh1236I	CGCG	2 cut(s)	56, 257
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	1 cut(s)	642
BsiSI	CCGG	1 cut(s)	218
BsiWI	CGTACG	1 cut(s)	615
BslI	CCNNNNNNNGG	3 cut(s)	296, 297, 462
BsmAI	GTCTC	3 cut(s)	547, 652, 735
BsnI	GGCC	1 cut(s)	5
Bsp119I	TTCGAA	1 cut(s)	401
Bsp1286I	GDGCHC	1 cut(s)	642
Bsp143I	GATC	3 cut(s)	50, 286, 392
BspACI	CCGC	3 cut(s)	54, 56, 257
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	628
BspFNI	CGCG	2 cut(s)	56, 257
BspHI	TCATGA	2 cut(s)	28, 549
BspLI	GGNNCC	2 cut(s)	52, 430
BspPI	GGATC	3 cut(s)	45, 58, 281
BspT104I	TTCGAA	1 cut(s)	401
BsrDI	GCAATG	1 cut(s)	241
BssECI	CCNNGG	4 cut(s)	45, 54, 177, 264
BssMI	GATC	3 cut(s)	50, 286, 392
BssNAI	GTATAC	1 cut(s)	124
BssT1I	CCWWGG	1 cut(s)	45
Bst1107I	GTATAC	1 cut(s)	124
Bst2UI	CCWGG	1 cut(s)	128
Bst4CI	ACNGT	3 cut(s)	121, 187, 695
Bst6I	CTCTTC	1 cut(s)	169
BstBAI	YACGTR	1 cut(s)	630
BstBI	TTCGAA	1 cut(s)	401
BstDEI	CTNAG	1 cut(s)	636
BstDSI	CCRYGG	1 cut(s)	54
BstFNI	CGCG	2 cut(s)	56, 257
BstKTI	GATC	3 cut(s)	53, 289, 395
BstMAI	GTCTC	3 cut(s)	547, 652, 735
BstMBI	GATC	3 cut(s)	50, 286, 392
BstMWI	GCNNNNNNNGC	1 cut(s)	62
BstNI	CCWGG	1 cut(s)	128
BstSCI	CCNGG	1 cut(s)	126
BstSFI	CTRYAG	1 cut(s)	564
BstUI	CGCG	2 cut(s)	56, 257
BstV2I	GAAGAC	2 cut(s)	234, 482
BstX2I	RGATCY	3 cut(s)	50, 286, 392
BstYI	RGATCY	3 cut(s)	50, 286, 392
BstZ17I	GTATAC	1 cut(s)	124
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	54
BtrI	CACGTC	1 cut(s)	664
BtsIMutI	CAGTG	2 cut(s)	479, 633
CciI	TCATGA	2 cut(s)	28, 549
Cfr13I	GGNCC	2 cut(s)	130, 465
Cfr42I	CCGCGG	1 cut(s)	57
CseI	GACGC	1 cut(s)	263
CsiI	ACCWGGT	1 cut(s)	126
Csp6I	GTAC	2 cut(s)	616, 631
CspCI	CAANNNNNGTGG	2 cut(s)	135, 170
CviAII	CATG	3 cut(s)	29, 462, 550
CviJI	RGCY	5 cut(s)	5, 276, 681, 699, 704
CviKI_1	RGCY	5 cut(s)	5, 276, 681, 699, 704
CviQI	GTAC	2 cut(s)	616, 631
DdeI	CTNAG	1 cut(s)	636
DpnI	GATC	3 cut(s)	52, 288, 394
DpnII	GATC	3 cut(s)	50, 286, 392
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	169
EarI	CTCTTC	1 cut(s)	169
Eco130I	CCWWGG	1 cut(s)	45
Eco32I	GATATC	1 cut(s)	496
Eco47I	GGWCC	2 cut(s)	130, 465
Eco57I	CTGAAG	2 cut(s)	384, 503
EcoRII	CCWGG	1 cut(s)	126
EcoRV	GATATC	1 cut(s)	496
EcoT14I	CCWWGG	1 cut(s)	45
ErhI	CCWWGG	1 cut(s)	45
FaeI	CATG	3 cut(s)	32, 465, 553
FalI	AAGNNNNNCTT	2 cut(s)	215, 247
FatI	CATG	3 cut(s)	28, 461, 549
FblI	GTMKAC	2 cut(s)	123, 201
FspBI	CTAG	2 cut(s)	777, 817
GsaI	CCCAGC	1 cut(s)	703
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	218
HgaI	GACGC	1 cut(s)	263
Hin1II	CATG	3 cut(s)	32, 465, 553
HincII	GTYRAC	2 cut(s)	202, 772
HindII	GTYRAC	2 cut(s)	202, 772
HinfI	GANTC	9 cut(s)	158, 173, 238, 260, 435, 600, 753, 773, 780
HpaII	CCGG	1 cut(s)	218
HphI	GGTGA	2 cut(s)	67, 199
Hpy166II	GTNNAC	4 cut(s)	124, 202, 633, 772
Hpy188I	TCNGA	4 cut(s)	96, 140, 178, 268
Hpy188III	TCNNGA	6 cut(s)	29, 439, 472, 550, 655, 777
Hpy8I	GTNNAC	4 cut(s)	124, 202, 633, 772
Hpy99I	CGWCG	2 cut(s)	100, 206
HpyAV	CCTTC	7 cut(s)	97, 217, 418, 478, 584, 727, 731
HpyCH4III	ACNGT	3 cut(s)	121, 187, 695
HpyCH4IV	ACGT	5 cut(s)	39, 81, 204, 629, 663
HpyCH4V	TGCA	1 cut(s)	344
HpyF10VI	GCNNNNNNNGC	1 cut(s)	62
HpyF3I	CTNAG	1 cut(s)	636
HpySE526I	ACGT	5 cut(s)	39, 81, 204, 629, 663
Hsp92II	CATG	3 cut(s)	32, 465, 553
KspI	CCGCGG	1 cut(s)	57
Kzo9I	GATC	3 cut(s)	50, 286, 392
LpnPI	CCDG	7 cut(s)	113, 140, 146, 231, 330, 445, 685
LweI	GCATC	2 cut(s)	180, 523
MabI	ACCWGGT	1 cut(s)	126
MaeI	CTAG	2 cut(s)	777, 817
MaeII	ACGT	5 cut(s)	39, 81, 204, 629, 663
MaeIII	GTNAC	1 cut(s)	334
MalI	GATC	3 cut(s)	52, 288, 394
MboI	GATC	3 cut(s)	50, 286, 392
MboII	GAAGA	9 cut(s)	20, 112, 119, 153, 156, 239, 377, 397, 487
MflI	RGATCY	3 cut(s)	50, 286, 392
MhlI	GDGCHC	1 cut(s)	642
MluCI	AATT	3 cut(s)	147, 325, 728
MlyI	GAGTC	6 cut(s)	167, 232, 444, 609, 747, 767
MmeI	TCCRAC	1 cut(s)	119
MnlI	CCTC	7 cut(s)	81, 172, 172, 274, 412, 462, 714
MroXI	GAANNNNTTC	1 cut(s)	275
MseI	TTAA	4 cut(s)	324, 359, 381, 609
MslI	CAYNNNNRTG	1 cut(s)	789
MspA1I	CMGCKG	1 cut(s)	56
MspI	CCGG	1 cut(s)	218
MspR9I	CCNGG	1 cut(s)	128
MvaI	CCWGG	1 cut(s)	128
MvnI	CGCG	2 cut(s)	56, 257
MwoI	GCNNNNNNNGC	1 cut(s)	62
NdeII	GATC	3 cut(s)	50, 286, 392
NlaIII	CATG	3 cut(s)	32, 465, 553
NlaIV	GGNNCC	2 cut(s)	52, 430
NmeAIII	GCCGAG	1 cut(s)	562
NspV	TTCGAA	1 cut(s)	401
OliI	CACNNNNGTG	1 cut(s)	789
PagI	TCATGA	2 cut(s)	28, 549
PdmI	GAANNNNTTC	1 cut(s)	275
PfeI	GAWTC	3 cut(s)	173, 260, 780
Pfl23II	CGTACG	1 cut(s)	615
PleI	GAGTC	6 cut(s)	166, 232, 443, 608, 747, 767
PpsI	GAGTC	6 cut(s)	166, 232, 443, 608, 747, 767
Ppu21I	YACGTR	1 cut(s)	630
PshBI	ATTAAT	1 cut(s)	324
PsiI	TTATAA	1 cut(s)	374
Psp1406I	AACGTT	2 cut(s)	39, 81
Psp6I	CCWGG	1 cut(s)	126
PspFI	CCCAGC	1 cut(s)	699
PspGI	CCWGG	1 cut(s)	126
PspLI	CGTACG	1 cut(s)	615
PspN4I	GGNNCC	2 cut(s)	52, 430
PspPI	GGNCC	2 cut(s)	130, 465
PsuI	RGATCY	3 cut(s)	50, 286, 392
RsaI	GTAC	2 cut(s)	617, 632
RsaNI	GTAC	2 cut(s)	616, 631
RseI	CAYNNNNRTG	1 cut(s)	789
SacII	CCGCGG	1 cut(s)	57
SalI	GTCGAC	1 cut(s)	200
SaqAI	TTAA	4 cut(s)	324, 359, 381, 609
Sau3AI	GATC	3 cut(s)	50, 286, 392
Sau96I	GGNCC	2 cut(s)	130, 465
SchI	GAGTC	6 cut(s)	167, 232, 444, 609, 747, 767
ScrFI	CCNGG	1 cut(s)	128
SduI	GDGCHC	1 cut(s)	642
SetI	ASST	9 cut(s)	42, 73, 84, 129, 207, 454, 632, 666, 683
SexAI	ACCWGGT	1 cut(s)	126
SfaNI	GCATC	2 cut(s)	180, 523
SfcI	CTRYAG	1 cut(s)	564
Sfr303I	CCGCGG	1 cut(s)	57
SfuI	TTCGAA	1 cut(s)	401
SgrBI	CCGCGG	1 cut(s)	57
SinI	GGWCC	2 cut(s)	130, 465
SmiMI	CAYNNNNRTG	1 cut(s)	789
SmlI	CTYRAG	1 cut(s)	797
SmoI	CTYRAG	1 cut(s)	797
Sse9I	AATT	3 cut(s)	147, 325, 728
SsiI	CCGC	3 cut(s)	54, 56, 257
SspI	AATATT	1 cut(s)	322
SspMI	CTAG	2 cut(s)	777, 817
StyD4I	CCNGG	1 cut(s)	126
StyI	CCWWGG	1 cut(s)	45
TaaI	ACNGT	3 cut(s)	121, 187, 695
TaiI	ACGT	5 cut(s)	42, 84, 207, 632, 666
TaqI	TCGA	3 cut(s)	201, 401, 603
TasI	AATT	3 cut(s)	147, 325, 728
TfiI	GAWTC	3 cut(s)	173, 260, 780
Tru1I	TTAA	4 cut(s)	324, 359, 381, 609
Tru9I	TTAA	4 cut(s)	324, 359, 381, 609
TscAI	CASTG	2 cut(s)	486, 640
TspGWI	ACGGA	1 cut(s)	458
TspRI	CASTG	2 cut(s)	486, 640
VpaK11BI	GGWCC	2 cut(s)	130, 465
VspI	ATTAAT	1 cut(s)	324
XbaI	TCTAGA	1 cut(s)	776
XcmI	CCANNNNNNNNNTGG	1 cut(s)	593
XmiI	GTMKAC	2 cut(s)	123, 201
XmnI	GAANNNNTTC	1 cut(s)	275
XspI	CTAG	2 cut(s)	777, 817

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.