Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0002072

Physical Location & Seq

Genomic Coordinates Forward (+)

10960534 .. 10960959

Gene Structure 426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G102200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGTGGAGGGTACCAGCAAACCCGAGCCCATTTCGCAATGTTTGGGAGATTAGGAAGACACTGACAACAAGCGATGTTGGACAAAATGTGAGCAGGACCAGCAGCAGGCTGCTGCTGAACACACATATGGTCAAGAAAAGCCTCCTGCCCTACTGGAGTTCTCGACTTATTAATCGAGTCGAAAGCCAAGAGGGAGCTGCAGTTACAATCTACGATTGTAACACAAGCTCCCAGCATCACTTGACTTTCAAGTATTGGAAGAGCTCAAGGACATATGTTTTGATAAAAAAATGGAACAGAGAATTTGTGAGGAGGAGGCAGTTGAAGGCTGGCGATGAAATTGGATTTTTCTGGGATGTTCACAGGTTGATGCTCATGTTTTCTGTGCTTGGACGCGCAGGGCACCAACTGCCTTCTTTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

142

Amino Acids

16.6

Weight (kDa)

10.77

Isoelectric Point (pI)

48.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78635 AT1G78640 AT2G33720
fragaria_vesca	FvH4_3g33791 FvH4_3g37630
malus_domestica	MD14G1106900.v1.1
prunus_persica	Prupe.5G092200_v2.0.a1 Prupe.5G102200_v2.0.a1 Prupe.5G102300_v2.0.a1 Prupe.5G102400_v2.0.a1 Prupe.5G102500_v2.0.a1
pyrus_communis	pycom05g30850 pycom05g30870 pycom14g10060
rosa_chinensis	RchiOBHm_Chr2g0116441
rosa_laevigata	RLG00000003924 RLG00000018270 RLG00000035460 RLG00000035470
rosa_multiflora	Rmu_sc0000338.1_g000013 Rmu_sc0000689.1_g000016 Rmu_sc0001164.1_g000007 Rmu_sc0004191.1_g000056 Rmu_sc0019528.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019310 Rroxscaffold_1G00019370 Rroxscaffold_5G00379640
rosa_rugosa	Rorug05G0141100 Rorug05G0339700
rosa_samantha	Rh2AG262200 Rh2CG268400 Rh2CG268500 Rh2DG270400 Rh5AG402000 Rh5BG019500 Rh5BG414100 Rh5CG438600 Rh5DG428700 Rh7AG166100 Rh7BG168200 Rh7CG174500 Rh7DG167800
rosa_wichuraiana	Rw5G037840 Rw7G014460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	10
AccB1I	GGYRCC	2 cut(s)	10, 402
AccII	CGCG	1 cut(s)	396
AcsI	RAATTY	1 cut(s)	302
AfaI	GTAC	1 cut(s)	12
AfiI	CCNNNNNNNGG	1 cut(s)	105
AgsI	TTSAA	2 cut(s)	250, 325
AluBI	AGCT	3 cut(s)	197, 228, 264
AluI	AGCT	3 cut(s)	197, 228, 264
Alw21I	GWGCWC	1 cut(s)	266
Ama87I	CYCGRG	1 cut(s)	22
ApeKI	GCWGC	4 cut(s)	102, 109, 112, 197
ApoI	RAATTY	1 cut(s)	302
ArsI	GACNNNNNNTTYG	2 cut(s)	262, 294
AseI	ATTAAT	1 cut(s)	171
Asp718I	GGTACC	1 cut(s)	10
AspLEI	GCGC	1 cut(s)	398
AspS9I	GGNCC	1 cut(s)	96
AvaI	CYCGRG	1 cut(s)	22
AvaII	GGWCC	1 cut(s)	96
BaeGI	GKGCMC	1 cut(s)	405
BanI	GGYRCC	2 cut(s)	10, 402
BanII	GRGCYC	2 cut(s)	29, 266
BbsI	GAAGAC	1 cut(s)	62
Bbv12I	GWGCWC	1 cut(s)	266
BbvI	GCAGC	4 cut(s)	96, 99, 114, 184
BfmI	CTRYAG	1 cut(s)	198
BisI	GCNGC	4 cut(s)	103, 110, 113, 198
BlsI	GCNGC	4 cut(s)	104, 111, 114, 199
Bme18I	GGWCC	1 cut(s)	96
BmeT110I	CYCGRG	1 cut(s)	22
BmgT120I	GGNCC	1 cut(s)	96
BmiI	GGNNCC	2 cut(s)	12, 404
BmsI	GCATC	2 cut(s)	244, 360
BpiI	GAAGAC	1 cut(s)	62
BpmI	CTGGAG	1 cut(s)	175
BpuEI	CTTGAG	1 cut(s)	250
BsaXI	ACNNNNNCTCC	4 cut(s)	186, 212, 216, 242
Bsc4I	CCNNNNNNNGG	1 cut(s)	105
Bse1I	ACTGG	1 cut(s)	158
Bse3DI	GCAATG	1 cut(s)	43
BseGI	GGATG	1 cut(s)	361
BseLI	CCNNNNNNNGG	1 cut(s)	105
BseMI	GCAATG	1 cut(s)	43
BseNI	ACTGG	1 cut(s)	158
BseRI	GAGGAG	2 cut(s)	325, 328
BseSI	GKGCMC	1 cut(s)	405
BseXI	GCAGC	4 cut(s)	96, 99, 114, 184
BseYI	CCCAGC	1 cut(s)	231
Bsh1236I	CGCG	1 cut(s)	396
BshNI	GGYRCC	2 cut(s)	10, 402
BsiHKAI	GWGCWC	1 cut(s)	266
BsiHKCI	CYCGRG	1 cut(s)	22
BslI	CCNNNNNNNGG	1 cut(s)	105
BsoBI	CYCGRG	1 cut(s)	22
Bsp1286I	GDGCHC	3 cut(s)	29, 266, 405
BspFNI	CGCG	1 cut(s)	396
BspLI	GGNNCC	2 cut(s)	12, 404
BspMAI	CTGCAG	1 cut(s)	202
BspQI	GCTCTTC	1 cut(s)	254
BspT107I	GGYRCC	2 cut(s)	10, 402
BsrDI	GCAATG	1 cut(s)	43
BsrI	ACTGG	1 cut(s)	158
Bst6I	CTCTTC	1 cut(s)	254
BstAPI	GCANNNNNTGC	1 cut(s)	409
BstC8I	GCNNGC	2 cut(s)	107, 331
BstF5I	GGATG	1 cut(s)	361
BstFNI	CGCG	1 cut(s)	396
BstHHI	GCGC	1 cut(s)	398
BstMWI	GCNNNNNNNGC	3 cut(s)	33, 99, 409
BstSFI	CTRYAG	1 cut(s)	198
BstSLI	GKGCMC	1 cut(s)	405
BstUI	CGCG	1 cut(s)	396
BstV1I	GCAGC	4 cut(s)	96, 99, 114, 184
BstV2I	GAAGAC	1 cut(s)	62
BtgZI	GCGATG	2 cut(s)	87, 348
BtsCI	GGATG	1 cut(s)	361
BtsIMutI	CAGTG	1 cut(s)	59
Cac8I	GCNNGC	2 cut(s)	107, 331
CfoI	GCGC	1 cut(s)	398
Cfr13I	GGNCC	1 cut(s)	96
CseI	GACGC	1 cut(s)	402
Csp6I	GTAC	1 cut(s)	11
CviAII	CATG	1 cut(s)	376
CviJI	RGCY	8 cut(s)	27, 109, 141, 186, 197, 228, 264, 329
CviKI_1	RGCY	8 cut(s)	27, 109, 141, 186, 197, 228, 264, 329
CviQI	GTAC	1 cut(s)	11
Eam1104I	CTCTTC	1 cut(s)	254
EarI	CTCTTC	1 cut(s)	254
Ecl136II	GAGCTC	1 cut(s)	264
Eco24I	GRGCYC	2 cut(s)	29, 266
Eco47I	GGWCC	1 cut(s)	96
Eco53kI	GAGCTC	1 cut(s)	264
Eco88I	CYCGRG	1 cut(s)	22
EcoICRI	GAGCTC	1 cut(s)	264
EcoT38I	GRGCYC	2 cut(s)	29, 266
FaeI	CATG	1 cut(s)	379
FaiI	YATR	5 cut(s)	126, 128, 274, 276, 377
FatI	CATG	1 cut(s)	375
FauNDI	CATATG	2 cut(s)	126, 274
Fnu4HI	GCNGC	4 cut(s)	103, 110, 113, 198
FokI	GGATG	1 cut(s)	368
FriOI	GRGCYC	2 cut(s)	29, 266
Fsp4HI	GCNGC	4 cut(s)	103, 110, 113, 198
GlaI	GCGC	1 cut(s)	397
GluI	GCNGC	4 cut(s)	103, 110, 113, 198
GsaI	CCCAGC	1 cut(s)	235
GsuI	CTGGAG	1 cut(s)	175
HgaI	GACGC	1 cut(s)	402
HhaI	GCGC	1 cut(s)	398
Hin1II	CATG	1 cut(s)	379
Hin6I	GCGC	1 cut(s)	396
HinP1I	GCGC	1 cut(s)	396
HinfI	GANTC	1 cut(s)	177
Hpy166II	GTNNAC	1 cut(s)	361
Hpy188III	TCNNGA	2 cut(s)	133, 162
Hpy8I	GTNNAC	1 cut(s)	361
HpyAV	CCTTC	2 cut(s)	319, 423
HpyCH4V	TGCA	1 cut(s)	200
HpyF10VI	GCNNNNNNNGC	3 cut(s)	33, 99, 409
Hsp92II	CATG	1 cut(s)	379
HspAI	GCGC	1 cut(s)	396
KpnI	GGTACC	1 cut(s)	14
LguI	GCTCTTC	1 cut(s)	254
LmnI	GCTCC	2 cut(s)	194, 233
Lsp1109I	GCAGC	4 cut(s)	96, 99, 114, 184
LweI	GCATC	2 cut(s)	244, 360
MaeIII	GTNAC	2 cut(s)	202, 218
MboII	GAAGA	2 cut(s)	67, 271
MhlI	GDGCHC	3 cut(s)	29, 266, 405
MluCI	AATT	2 cut(s)	302, 339
MlyI	GAGTC	1 cut(s)	186
MmeI	TCCRAC	1 cut(s)	58
MnlI	CCTC	5 cut(s)	152, 184, 303, 306, 309
MseI	TTAA	1 cut(s)	171
MslI	CAYNNNNRTG	1 cut(s)	125
MvnI	CGCG	1 cut(s)	396
MwoI	GCNNNNNNNGC	3 cut(s)	33, 99, 409
NdeI	CATATG	2 cut(s)	126, 274
NlaIII	CATG	1 cut(s)	379
NlaIV	GGNNCC	2 cut(s)	12, 404
PciSI	GCTCTTC	1 cut(s)	254
PkrI	GCNGC	4 cut(s)	104, 111, 114, 199
PleI	GAGTC	1 cut(s)	185
PpsI	GAGTC	1 cut(s)	185
PshBI	ATTAAT	1 cut(s)	171
Psp124BI	GAGCTC	1 cut(s)	266
PspFI	CCCAGC	1 cut(s)	231
PspN4I	GGNNCC	2 cut(s)	12, 404
PspPI	GGNCC	1 cut(s)	96
PstI	CTGCAG	1 cut(s)	202
RsaI	GTAC	1 cut(s)	12
RsaNI	GTAC	1 cut(s)	11
RseI	CAYNNNNRTG	1 cut(s)	125
SacI	GAGCTC	1 cut(s)	266
SapI	GCTCTTC	1 cut(s)	254
SaqAI	TTAA	1 cut(s)	171
SatI	GCNGC	4 cut(s)	103, 110, 113, 198
Sau96I	GGNCC	1 cut(s)	96
SchI	GAGTC	1 cut(s)	186
SduI	GDGCHC	3 cut(s)	29, 266, 405
SetI	ASST	4 cut(s)	199, 230, 266, 368
SfaNI	GCATC	2 cut(s)	244, 360
SfcI	CTRYAG	1 cut(s)	198
SinI	GGWCC	1 cut(s)	96
SmiMI	CAYNNNNRTG	1 cut(s)	125
SmlI	CTYRAG	1 cut(s)	265
SmoI	CTYRAG	1 cut(s)	265
Sse9I	AATT	2 cut(s)	302, 339
SstI	GAGCTC	1 cut(s)	266
TaqI	TCGA	3 cut(s)	163, 175, 180
TasI	AATT	2 cut(s)	302, 339
Tru1I	TTAA	1 cut(s)	171
Tru9I	TTAA	1 cut(s)	171
TscAI	CASTG	1 cut(s)	66
TseI	GCWGC	4 cut(s)	102, 109, 112, 197
TspDTI	ATGAA	1 cut(s)	351
TspRI	CASTG	1 cut(s)	66
VpaK11BI	GGWCC	1 cut(s)	96
VspI	ATTAAT	1 cut(s)	171
XapI	RAATTY	1 cut(s)	302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.