Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002072

Physical Location & Seq

Genomic Coordinates Forward (+)

14263732 .. 14265202

Gene Structure 1471 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G33720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGAAGATGCCTCCTCCCTTTTCTGCGTCGAAGACTCAATACTTGTTCCACGACGAGTCATCGGAAAACTCTAAAAAGAGTTTGGTCTCCACAACTCTTTCTTTGTCGTCTTGTGAAAACCCTAATAAGAGGAAGATGAACTCTGACGAAGTTCTCAATATTTCTTGCATACCAAGAGACTACAAATTAACACAAGTAGAAAGAAAGATTGCACGAATGAGGAATCTCTCGTATCAAGAAAAGGCAGAGGACGAATGGTACGGTGTCTCAACAGAACTAACACTCTTCAAGGATCCGTGGATCATCAAAAAGGTTTTTCACTTTGCTTCAGTCTTGGATATGGCTCCCAACTCAGTCTCAAATACTCATTGCTTGTTGGACACGGAGTCACCAGAAAACGCTGAAGAGAGTTTGGTCTCCCTGGATCTGTGTTTCTATGACAAAACATGGCCACATGATCCCAATGTTGCTTACAATAAACCAACGTCCGAAGAAGCAATAAACCTGGCGTGGATGAGGACTATGTCGAAGAGAGCAAGAAAAGAAGAGGAGAAGTACTACGTCTCGACAGAACTAACTCTCCTCACCGTCGCTGACCCATGGACCTTGAAGATGGCAATGACCAAAAGCAGTATTGGCAACCTATACCGTCTTGTTCTAAAGGCGAGCTTTGTAGACATCCACATTCTGAGATATCTCCCTTTGGATGATCAAATGATGGTCAAAGAAGACTCTGGATTAGCAGTCGAGGTGTATGATCACGACACTGACTCTGTGCACAATCTGGCTCTTAAGAAATGGGCCAAATCTTCAAGCTTTGTTCTCGTCAGCGGATGGCGTAAGTGCTTTGTCGACAGAAGAGGTTTGCAGGTTGGCGATGTGATTGGAATGTATTGGGATCGTTCTGAATCTAAGCTTCATTTTTGTGTGCTTTCTCGTTCCGAAACAATGGATTCAGCTCCTCTTCCTCCAAGTCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

326

Amino Acids

37.42

Weight (kDa)

6.1

Isoelectric Point (pI)

50.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	206 - 313	7.7e-06	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78635 AT1G78640 AT2G33720
fragaria_vesca	FvH4_3g33791 FvH4_3g37630
malus_domestica	MD14G1106900.v1.1
prunus_persica	Prupe.5G092200_v2.0.a1 Prupe.5G102200_v2.0.a1 Prupe.5G102300_v2.0.a1 Prupe.5G102400_v2.0.a1 Prupe.5G102500_v2.0.a1
pyrus_communis	pycom05g30850 pycom05g30870 pycom14g10060
rosa_chinensis	RchiOBHm_Chr2g0116441
rosa_laevigata	RLG00000003924 RLG00000018270 RLG00000035460 RLG00000035470
rosa_multiflora	Rmu_sc0000338.1_g000013 Rmu_sc0000689.1_g000016 Rmu_sc0001164.1_g000007 Rmu_sc0004191.1_g000056 Rmu_sc0019528.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019310 Rroxscaffold_1G00019370 Rroxscaffold_5G00379640
rosa_rugosa	Rorug05G0141100 Rorug05G0339700
rosa_samantha	Rh2AG262200 Rh2CG268400 Rh2CG268500 Rh2DG270400 Rh5AG402000 Rh5BG019500 Rh5BG414100 Rh5CG438600 Rh5DG428700 Rh7AG166100 Rh7BG168200 Rh7CG174500 Rh7DG167800
rosa_wichuraiana	Rw5G037840 Rw7G014460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	859
AccI	GTMKAC	2 cut(s)	675, 852
AciI	CCGC	1 cut(s)	831
AclWI	GGATC	6 cut(s)	287, 300, 308, 432, 452, 906
AcoI	YGGCCR	1 cut(s)	449
AcuI	CTGAAG	2 cut(s)	312, 423
AfaI	GTAC	2 cut(s)	260, 557
AflII	CTTAAG	1 cut(s)	791
AgsI	TTSAA	3 cut(s)	289, 610, 813
AhdI	GACNNNNNGTC	1 cut(s)	385
AjnI	CCWGG	2 cut(s)	420, 504
AloI	GAACNNNNNNTCC	2 cut(s)	564, 596
AluBI	AGCT	4 cut(s)	669, 816, 916, 959
AluI	AGCT	4 cut(s)	669, 816, 916, 959
Alw21I	GWGCWC	1 cut(s)	780
Alw26I	GTCTC	6 cut(s)	91, 171, 271, 361, 421, 568
Alw44I	GTGCAC	1 cut(s)	776
AlwI	GGATC	6 cut(s)	287, 300, 308, 432, 452, 906
AoxI	GGCC	2 cut(s)	449, 801
ApaLI	GTGCAC	1 cut(s)	776
AspS9I	GGNCC	2 cut(s)	603, 801
AsuHPI	GGTGA	2 cut(s)	381, 577
AvaII	GGWCC	1 cut(s)	603
BaeGI	GKGCMC	1 cut(s)	780
BalI	TGGCCA	1 cut(s)	451
BamHI	GGATCC	1 cut(s)	292
BarI	GAAGNNNNNNTAC	2 cut(s)	23, 55
BbsI	GAAGAC	2 cut(s)	38, 735
Bbv12I	GWGCWC	1 cut(s)	780
BccI	CCATC	3 cut(s)	607, 712, 828
BciT130I	CCWGG	2 cut(s)	422, 506
BclI	TGATCA	2 cut(s)	709, 757
BcoDI	GTCTC	6 cut(s)	91, 171, 271, 361, 421, 568
BfrI	CTTAAG	1 cut(s)	791
BfuAI	ACCTGC	1 cut(s)	859
BmcAI	AGTACT	1 cut(s)	557
Bme1390I	CCNGG	2 cut(s)	422, 506
Bme18I	GGWCC	1 cut(s)	603
BmeRI	GACNNNNNGTC	1 cut(s)	385
BmgT120I	GGNCC	2 cut(s)	603, 801
BmiI	GGNNCC	2 cut(s)	294, 345
BmrFI	CCNGG	2 cut(s)	422, 506
BpiI	GAAGAC	2 cut(s)	38, 735
BsaI	GGTCTC	2 cut(s)	91, 421
BsaJI	CCNNGG	3 cut(s)	296, 420, 599
BsaXI	ACNNNNNCTCC	2 cut(s)	564, 594
Bse3DI	GCAATG	2 cut(s)	367, 624
BseBI	CCWGG	2 cut(s)	422, 506
BseDI	CCNNGG	3 cut(s)	296, 420, 599
BseGI	GGATG	4 cut(s)	519, 678, 712, 839
BseMI	GCAATG	2 cut(s)	367, 624
BseMII	CTCAG	2 cut(s)	366, 680
BseRI	GAGGAG	3 cut(s)	563, 572, 951
BseSI	GKGCMC	1 cut(s)	780
BshFI	GGCC	2 cut(s)	451, 803
BsiHKAI	GWGCWC	1 cut(s)	780
BsmAI	GTCTC	6 cut(s)	91, 171, 271, 361, 421, 568
BsmBI	CGTCTC	1 cut(s)	568
BsnI	GGCC	2 cut(s)	451, 803
Bso31I	GGTCTC	2 cut(s)	91, 421
Bsp1286I	GDGCHC	1 cut(s)	780
Bsp143I	GATC	7 cut(s)	292, 300, 424, 457, 709, 757, 898
Bsp19I	CCATGG	1 cut(s)	599
BspACI	CCGC	1 cut(s)	831
BspANI	GGCC	2 cut(s)	451, 803
BspCNI	CTCAG	2 cut(s)	365, 681
BspLI	GGNNCC	2 cut(s)	294, 345
BspMI	ACCTGC	1 cut(s)	859
BspPI	GGATC	6 cut(s)	287, 300, 308, 432, 452, 906
BspTI	CTTAAG	1 cut(s)	791
BspTNI	GGTCTC	2 cut(s)	91, 421
BsrDI	GCAATG	2 cut(s)	367, 624
BssECI	CCNNGG	3 cut(s)	296, 420, 599
BssMI	GATC	7 cut(s)	292, 300, 424, 457, 709, 757, 898
BssT1I	CCWWGG	1 cut(s)	599
Bst2UI	CCWGG	2 cut(s)	422, 506
Bst4CI	ACNGT	3 cut(s)	263, 589, 650
Bst6I	CTCTTC	6 cut(s)	290, 399, 524, 540, 853, 969
BstAFI	CTTAAG	1 cut(s)	791
BstC8I	GCNNGC	1 cut(s)	667
BstDEI	CTNAG	3 cut(s)	352, 689, 912
BstDSI	CCRYGG	2 cut(s)	296, 599
BstF5I	GGATG	4 cut(s)	519, 678, 712, 839
BstKTI	GATC	7 cut(s)	295, 303, 427, 460, 712, 760, 901
BstMAI	GTCTC	6 cut(s)	91, 171, 271, 361, 421, 568
BstMBI	GATC	7 cut(s)	292, 300, 424, 457, 709, 757, 898
BstMWI	GCNNNNNNNGC	1 cut(s)	636
BstNI	CCWGG	2 cut(s)	422, 506
BstSCI	CCNGG	2 cut(s)	420, 504
BstSLI	GKGCMC	1 cut(s)	780
BstV2I	GAAGAC	2 cut(s)	38, 735
BstX2I	RGATCY	2 cut(s)	292, 424
BstYI	RGATCY	2 cut(s)	292, 424
BsuRI	GGCC	2 cut(s)	451, 803
BtgI	CCRYGG	2 cut(s)	296, 599
BtgZI	GCGATG	1 cut(s)	891
BtsCI	GGATG	4 cut(s)	519, 678, 712, 839
BtsIMutI	CAGTG	1 cut(s)	765
BveI	ACCTGC	1 cut(s)	859
Cac8I	GCNNGC	1 cut(s)	667
Cfr13I	GGNCC	2 cut(s)	603, 801
CseI	GACGC	1 cut(s)	15
Csp6I	GTAC	2 cut(s)	259, 556
CviAII	CATG	3 cut(s)	447, 455, 600
CviJI	RGCY	8 cut(s)	344, 451, 669, 788, 803, 816, 916, 959
CviKI_1	RGCY	8 cut(s)	344, 451, 669, 788, 803, 816, 916, 959
CviQI	GTAC	2 cut(s)	259, 556
DdeI	CTNAG	3 cut(s)	352, 689, 912
DpnI	GATC	7 cut(s)	294, 302, 426, 459, 711, 759, 900
DpnII	GATC	7 cut(s)	292, 300, 424, 457, 709, 757, 898
DriI	GACNNNNNGTC	1 cut(s)	385
EaeI	YGGCCR	1 cut(s)	449
Eam1104I	CTCTTC	6 cut(s)	290, 399, 524, 540, 853, 969
Eam1105I	GACNNNNNGTC	1 cut(s)	385
EarI	CTCTTC	6 cut(s)	290, 399, 524, 540, 853, 969
Eco130I	CCWWGG	1 cut(s)	599
Eco31I	GGTCTC	2 cut(s)	91, 421
Eco32I	GATATC	1 cut(s)	695
Eco47I	GGWCC	1 cut(s)	603
Eco57I	CTGAAG	2 cut(s)	312, 423
EcoRII	CCWGG	2 cut(s)	420, 504
EcoRV	GATATC	1 cut(s)	695
EcoT14I	CCWWGG	1 cut(s)	599
ErhI	CCWWGG	1 cut(s)	599
Esp3I	CGTCTC	1 cut(s)	568
FaeI	CATG	3 cut(s)	450, 458, 603
FalI	AAGNNNNNCTT	2 cut(s)	653, 685
FatI	CATG	3 cut(s)	446, 454, 599
FbaI	TGATCA	2 cut(s)	709, 757
FblI	GTMKAC	2 cut(s)	675, 852
FokI	GGATG	4 cut(s)	526, 665, 719, 846
HaeIII	GGCC	2 cut(s)	451, 803
HgaI	GACGC	1 cut(s)	15
Hin1II	CATG	3 cut(s)	450, 458, 603
HincII	GTYRAC	1 cut(s)	853
HindII	GTYRAC	1 cut(s)	853
HindIII	AAGCTT	2 cut(s)	814, 914
HinfI	GANTC	8 cut(s)	34, 56, 223, 386, 731, 770, 908, 953
HphI	GGTGA	2 cut(s)	381, 577
Hpy166II	GTNNAC	3 cut(s)	676, 778, 853
Hpy188I	TCNGA	6 cut(s)	64, 145, 490, 690, 907, 943
Hpy188III	TCNNGA	4 cut(s)	236, 565, 735, 761
Hpy8I	GTNNAC	3 cut(s)	676, 778, 853
Hpy99I	CGWCG	3 cut(s)	31, 56, 593
HpyCH4III	ACNGT	3 cut(s)	263, 589, 650
HpyCH4IV	ACGT	2 cut(s)	485, 561
HpyCH4V	TGCA	4 cut(s)	168, 212, 778, 868
HpyF10VI	GCNNNNNNNGC	1 cut(s)	636
HpyF3I	CTNAG	3 cut(s)	352, 689, 912
HpySE526I	ACGT	2 cut(s)	485, 561
Hsp92II	CATG	3 cut(s)	450, 458, 603
Ksp22I	TGATCA	2 cut(s)	709, 757
Kzo9I	GATC	7 cut(s)	292, 300, 424, 457, 709, 757, 898
LmnI	GCTCC	2 cut(s)	349, 964
LpnPI	CCDG	8 cut(s)	405, 407, 434, 491, 518, 720, 770, 854
MaeII	ACGT	2 cut(s)	485, 561
MaeIII	GTNAC	1 cut(s)	387
MalI	GATC	7 cut(s)	294, 302, 426, 459, 711, 759, 900
MboI	GATC	7 cut(s)	292, 300, 424, 457, 709, 757, 898
MflI	RGATCY	2 cut(s)	292, 424
MhlI	GDGCHC	1 cut(s)	780
MlsI	TGGCCA	1 cut(s)	451
MluCI	AATT	1 cut(s)	185
MluNI	TGGCCA	1 cut(s)	451
MlyI	GAGTC	5 cut(s)	28, 65, 395, 725, 764
MmeI	TCCRAC	1 cut(s)	357
Mox20I	TGGCCA	1 cut(s)	451
MscI	TGGCCA	1 cut(s)	451
MseI	TTAA	2 cut(s)	188, 792
MslI	CAYNNNNRTG	1 cut(s)	924
Msp20I	TGGCCA	1 cut(s)	451
MspA1I	CMGCKG	1 cut(s)	831
MspCI	CTTAAG	1 cut(s)	791
MspR9I	CCNGG	2 cut(s)	422, 506
MvaI	CCWGG	2 cut(s)	422, 506
MwoI	GCNNNNNNNGC	1 cut(s)	636
NcoI	CCATGG	1 cut(s)	599
NdeII	GATC	7 cut(s)	292, 300, 424, 457, 709, 757, 898
NlaIII	CATG	3 cut(s)	450, 458, 603
NlaIV	GGNNCC	2 cut(s)	294, 345
NmuCI	GTSAC	1 cut(s)	387
PfeI	GAWTC	3 cut(s)	223, 908, 953
PflFI	GACNNNGTC	1 cut(s)	523
PleI	GAGTC	5 cut(s)	28, 64, 394, 725, 764
PpsI	GAGTC	5 cut(s)	28, 64, 394, 725, 764
Psp6I	CCWGG	2 cut(s)	420, 504
PspGI	CCWGG	2 cut(s)	420, 504
PspN4I	GGNNCC	2 cut(s)	294, 345
PspPI	GGNCC	2 cut(s)	603, 801
PsuI	RGATCY	2 cut(s)	292, 424
PsyI	GACNNNGTC	1 cut(s)	523
RsaI	GTAC	2 cut(s)	260, 557
RsaNI	GTAC	2 cut(s)	259, 556
RseI	CAYNNNNRTG	1 cut(s)	924
SalI	GTCGAC	1 cut(s)	851
SaqAI	TTAA	2 cut(s)	188, 792
Sau3AI	GATC	7 cut(s)	292, 300, 424, 457, 709, 757, 898
Sau96I	GGNCC	2 cut(s)	603, 801
ScaI	AGTACT	1 cut(s)	557
SchI	GAGTC	5 cut(s)	28, 65, 395, 725, 764
ScrFI	CCNGG	2 cut(s)	422, 506
SduI	GDGCHC	1 cut(s)	780
SinI	GGWCC	1 cut(s)	603
SmiMI	CAYNNNNRTG	1 cut(s)	924
SmlI	CTYRAG	1 cut(s)	791
SmoI	CTYRAG	1 cut(s)	791
Sse9I	AATT	1 cut(s)	185
SsiI	CCGC	1 cut(s)	831
SspI	AATATT	1 cut(s)	160
StyD4I	CCNGG	2 cut(s)	420, 504
StyI	CCWWGG	1 cut(s)	599
TaaI	ACNGT	3 cut(s)	263, 589, 650
TaiI	ACGT	2 cut(s)	488, 564
TaqI	TCGA	5 cut(s)	29, 527, 566, 747, 852
TasI	AATT	1 cut(s)	185
TatI	WGTACW	1 cut(s)	555
TfiI	GAWTC	3 cut(s)	223, 908, 953
Tru1I	TTAA	2 cut(s)	188, 792
Tru9I	TTAA	2 cut(s)	188, 792
TscAI	CASTG	1 cut(s)	772
TseFI	GTSAC	1 cut(s)	387
Tsp45I	GTSAC	1 cut(s)	387
TspDTI	ATGAA	3 cut(s)	17, 152, 908
TspGWI	ACGGA	2 cut(s)	285, 398
TspRI	CASTG	1 cut(s)	772
Tth111I	GACNNNGTC	1 cut(s)	523
Vha464I	CTTAAG	1 cut(s)	791
VneI	GTGCAC	1 cut(s)	776
VpaK11BI	GGWCC	1 cut(s)	603
XmiI	GTMKAC	2 cut(s)	675, 852
ZrmI	AGTACT	1 cut(s)	557

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.