Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000584

Physical Location & Seq

Genomic Coordinates Reverse (-)

8557646 .. 8559808

Gene Structure 2163 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G19830.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGCTTCTTTTGGTTCAGACTCTTGAGATGTTAGAGAAGAAGGAGAATGTTCTTCTCAAGAAAGCTACTGGAGAGGTTGAGAAAGCTAAGGAATTCTCCCGGGCGAAGAACAAACGCGCGGCTATACAATGTTTGAAAAGGAAAAGGTTATATGAGCAACAAGTTGAACAGCTCGGGAATTTCCAGCTCCGTATTCATGATCAAATGATTATGTTAGAAGGTGCTAAAGCAACAACAGAGACTGTAGATGCTTTGAGGACTGGAGCTTCTGCAATGAAAGCTATGCAGAAAGCAACAAACATTGATGATGTTGACAAGACAATGGATGAGATCAATGAACAAACTGAGAACATGAAACAGATCCAAGAAGCATTGTCGGCTCCATTTGGGGCTAATGATTTTGATGAGGATGAATTGGAAGCAGAACTTGACGAACTAGAAGGCGCTGAGCTAGAAGAGCAACTTCTTCAGCCTGTTCCAATCCATGTGCCTCAAGGAAACAAGCCTGCTCGTGCTCCAGCTCAGAAGCAACCTACTGCTGAGGAAGATGAACTCGCTGCCTTACAAGCTGAGATGGCTCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000815 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0006810 GO:0006900 GO:0006996 GO:0007032 GO:0008150 GO:0009987 GO:0010008 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0036452 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0061024 GO:0070676 GO:0071840 GO:0071944 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

194

Amino Acids

21.76

Weight (kDa)

4.68

Isoelectric Point (pI)

46.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Snf7	PF03357	20 - 184	3.9e-44	Snf7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000584)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19830 AT2G19830 AT4G29160 AT4G29160 AT4G29160
fragaria_vesca	FvH4_1g06720 FvH4_1g06720 FvH4_1g06720 FvH4_2g32330 FvH4_2g32330 FvH4_4g20950
malus_domestica	MD02G1072100.v1.1 MD08G1074600.v1.1 MD15G1062300.v1.1 MD15G1201900.v1.1
prunus_persica	Prupe.1G416300_v2.0.a1 Prupe.1G416300_v2.0.a1 Prupe.7G215600_v2.0.a1 Prupe.7G215600_v2.0.a1 Prupe.7G215600_v2.0.a1
pyrus_communis	pycom02g05610 pycom08g06160 pycom15g05890 pycom15g05900 pycom15g17920
rosa_chinensis	RchiOBHm_Chr2g0092461 RchiOBHm_Chr4g0426411 RchiOBHm_Chr4g0426421 RchiOBHm_Chr6g0310361 RchiOBHm_Chr7g0204861 RchiOBHm_Chr7g0204871 RchiOBHm_Chr7g0204891
rosa_laevigata	RLG00000003423 RLG00000003426 RLG00000007295 RLG00000007296 RLG00000010489 RLG00000016312
rosa_multiflora	Rmu_co8485477.1_g000001 Rmu_sc0001361.1_g000025 Rmu_sc0002180.1_g000006 Rmu_sc0002180.1_g000014 Rmu_sc0002180.1_g000015 Rmu_sc0002348.1_g000004 Rmu_sc0007942.1_g000001 Rmu_sc0042068.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149100 Rroxscaffold_3G00252690 Rroxscaffold_7G00158620
rosa_rugosa	Rorug02G0026500 Rorug04G0210700 Rorug04G0211100 Rorug06G0379300 Rorug07G0086400
rosa_samantha	Rh2AG072400 Rh2BG072800 Rh2CG074000 Rh2DG070800 Rh4AG267800 Rh4BG273900 Rh4BG274000 Rh4CG288100 Rh4DG270700 Rh4DG270800 Rh6AG493500 Rh6BG503200 Rh6CG508200 Rh6DG494300 Rh7AG216800 Rh7AG216900 Rh7BG213900 Rh7CG230300 Rh7DG224400 Rh7DG224500 Rh7DG224700
rosa_wichuraiana	Rw2G006030 Rw4G023220 Rw6G042940 Rw7G018790 Rw7G018800 Rw7G018820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	117, 119
AciI	CCGC	1 cut(s)	119
AclWI	GGATC	1 cut(s)	355
AcsI	RAATTY	2 cut(s)	92, 178
AcuI	CTGAAG	1 cut(s)	452
AgsI	TTSAA	2 cut(s)	136, 167
AluBI	AGCT	9 cut(s)	65, 86, 172, 187, 266, 281, 451, 521, 569
AluI	AGCT	9 cut(s)	65, 86, 172, 187, 266, 281, 451, 521, 569
Alw21I	GWGCWC	1 cut(s)	517
Alw26I	GTCTC	1 cut(s)	233
AlwI	GGATC	1 cut(s)	355
AlwNI	CAGNNNCTG	1 cut(s)	242
Ama87I	CYCGRG	2 cut(s)	99, 173
ApeKI	GCWGC	1 cut(s)	557
ApoI	RAATTY	2 cut(s)	92, 178
AspLEI	GCGC	2 cut(s)	119, 446
AsuC2I	CCSGG	2 cut(s)	100, 101
AvaI	CYCGRG	2 cut(s)	99, 173
BauI	CACGAG	1 cut(s)	510
Bbv12I	GWGCWC	1 cut(s)	517
BbvCI	CCTCAGC	1 cut(s)	540
BbvI	GCAGC	1 cut(s)	544
BccI	CCATC	1 cut(s)	568
BclI	TGATCA	1 cut(s)	199
BcnI	CCSGG	2 cut(s)	100, 101
BcoDI	GTCTC	1 cut(s)	233
BfaI	CTAG	2 cut(s)	437, 452
BfmI	CTRYAG	1 cut(s)	243
BfoI	RGCGCY	1 cut(s)	447
BisI	GCNGC	2 cut(s)	120, 558
BlpI	GCTNAGC	1 cut(s)	447
BlsI	GCNGC	2 cut(s)	121, 559
Bme1390I	CCNGG	2 cut(s)	100, 101
BmeT110I	CYCGRG	2 cut(s)	99, 173
BmiI	GGNNCC	1 cut(s)	381
BmrFI	CCNGG	2 cut(s)	100, 101
BmsI	GCATC	1 cut(s)	238
BpmI	CTGGAG	3 cut(s)	90, 282, 501
Bpu10I	CCTNAGC	2 cut(s)	87, 540
Bpu1102I	GCTNAGC	1 cut(s)	447
BpuEI	CTTGAG	3 cut(s)	41, 44, 477
BpuMI	CCSGG	2 cut(s)	100, 101
BsaJI	CCNNGG	1 cut(s)	99
Bse1I	ACTGG	2 cut(s)	73, 265
Bse3DI	GCAATG	1 cut(s)	279
BseDI	CCNNGG	1 cut(s)	99
BseGI	GGATG	2 cut(s)	331, 415
BseMI	GCAATG	1 cut(s)	279
BseMII	CTCAG	5 cut(s)	336, 438, 531, 536, 561
BseNI	ACTGG	2 cut(s)	73, 265
BseXI	GCAGC	1 cut(s)	544
Bsh1236I	CGCG	2 cut(s)	117, 119
BsiHKAI	GWGCWC	1 cut(s)	517
BsiHKCI	CYCGRG	2 cut(s)	99, 173
BsiSI	CCGG	1 cut(s)	100
BsmAI	GTCTC	1 cut(s)	233
BsoBI	CYCGRG	2 cut(s)	99, 173
Bsp1286I	GDGCHC	1 cut(s)	517
Bsp143I	GATC	3 cut(s)	199, 330, 360
Bsp1720I	GCTNAGC	1 cut(s)	447
BspACI	CCGC	1 cut(s)	119
BspCNI	CTCAG	5 cut(s)	337, 439, 532, 535, 562
BspFNI	CGCG	2 cut(s)	117, 119
BspHI	TCATGA	1 cut(s)	196
BspLI	GGNNCC	1 cut(s)	381
BspPI	GGATC	1 cut(s)	355
BspQI	GCTCTTC	1 cut(s)	450
BsrDI	GCAATG	1 cut(s)	279
BsrI	ACTGG	2 cut(s)	73, 265
BssECI	CCNNGG	1 cut(s)	99
BssMI	GATC	3 cut(s)	199, 330, 360
BssSI	CACGAG	1 cut(s)	510
Bst2BI	CACGAG	1 cut(s)	510
Bst4CI	ACNGT	1 cut(s)	244
Bst6I	CTCTTC	1 cut(s)	450
BstC8I	GCNNGC	1 cut(s)	507
BstDEI	CTNAG	6 cut(s)	87, 345, 447, 522, 540, 570
BstF5I	GGATG	2 cut(s)	331, 415
BstFNI	CGCG	2 cut(s)	117, 119
BstH2I	RGCGCY	1 cut(s)	447
BstHHI	GCGC	2 cut(s)	119, 446
BstKTI	GATC	3 cut(s)	202, 333, 363
BstMAI	GTCTC	1 cut(s)	233
BstMBI	GATC	3 cut(s)	199, 330, 360
BstMWI	GCNNNNNNNGC	5 cut(s)	278, 377, 457, 566, 575
BstSCI	CCNGG	2 cut(s)	98, 99
BstSFI	CTRYAG	1 cut(s)	243
BstUI	CGCG	2 cut(s)	117, 119
BstV1I	GCAGC	1 cut(s)	544
BstX2I	RGATCY	1 cut(s)	360
BstYI	RGATCY	1 cut(s)	360
BtsCI	GGATG	2 cut(s)	331, 415
Cac8I	GCNNGC	1 cut(s)	507
CaiI	CAGNNNCTG	1 cut(s)	242
CciI	TCATGA	1 cut(s)	196
CfoI	GCGC	2 cut(s)	119, 446
Cfr9I	CCCGGG	1 cut(s)	99
CviAII	CATG	3 cut(s)	197, 352, 485
DdeI	CTNAG	6 cut(s)	87, 345, 447, 522, 540, 570
DpnI	GATC	3 cut(s)	201, 332, 362
DpnII	GATC	3 cut(s)	199, 330, 360
Eam1104I	CTCTTC	1 cut(s)	450
EarI	CTCTTC	1 cut(s)	450
Eco57I	CTGAAG	1 cut(s)	452
Eco88I	CYCGRG	2 cut(s)	99, 173
EcoRI	GAATTC	1 cut(s)	92
FaeI	CATG	3 cut(s)	200, 355, 488
FaiI	YATR	8 cut(s)	125, 151, 153, 198, 212, 284, 353, 486
FalI	AAGNNNNNCTT	4 cut(s)	411, 443, 447, 479
FatI	CATG	3 cut(s)	196, 351, 484
FbaI	TGATCA	1 cut(s)	199
Fnu4HI	GCNGC	2 cut(s)	120, 558
FokI	GGATG	2 cut(s)	338, 422
Fsp4HI	GCNGC	2 cut(s)	120, 558
FspBI	CTAG	2 cut(s)	437, 452
GlaI	GCGC	2 cut(s)	118, 445
GluI	GCNGC	2 cut(s)	120, 558
GsuI	CTGGAG	3 cut(s)	90, 282, 501
HaeII	RGCGCY	1 cut(s)	447
HapII	CCGG	1 cut(s)	100
HhaI	GCGC	2 cut(s)	119, 446
Hin1II	CATG	3 cut(s)	200, 355, 488
Hin6I	GCGC	2 cut(s)	117, 444
HinP1I	GCGC	2 cut(s)	117, 444
HincII	GTYRAC	1 cut(s)	313
HindII	GTYRAC	1 cut(s)	313
HinfI	GANTC	1 cut(s)	19
HpaII	CCGG	1 cut(s)	100
Hpy166II	GTNNAC	1 cut(s)	313
Hpy188I	TCNGA	2 cut(s)	18, 525
Hpy188III	TCNNGA	4 cut(s)	23, 58, 175, 197
Hpy8I	GTNNAC	1 cut(s)	313
HpyAV	CCTTC	3 cut(s)	34, 212, 434
HpyCH4III	ACNGT	1 cut(s)	244
HpyCH4V	TGCA	2 cut(s)	272, 286
HpyF10VI	GCNNNNNNNGC	5 cut(s)	278, 377, 457, 566, 575
HpyF3I	CTNAG	6 cut(s)	87, 345, 447, 522, 540, 570
Hsp92II	CATG	3 cut(s)	200, 355, 488
HspAI	GCGC	2 cut(s)	117, 444
Ksp22I	TGATCA	1 cut(s)	199
Kzo9I	GATC	3 cut(s)	199, 330, 360
LguI	GCTCTTC	1 cut(s)	450
LmnI	GCTCC	4 cut(s)	192, 263, 385, 520
LpnPI	CCDG	7 cut(s)	54, 113, 197, 246, 486, 519, 531
Lsp1109I	GCAGC	1 cut(s)	544
LweI	GCATC	1 cut(s)	238
MaeI	CTAG	2 cut(s)	437, 452
MalI	GATC	3 cut(s)	201, 332, 362
MboI	GATC	3 cut(s)	199, 330, 360
MboII	GAAGA	6 cut(s)	44, 49, 118, 458, 467, 557
MflI	RGATCY	1 cut(s)	360
MhlI	GDGCHC	1 cut(s)	517
MluCI	AATT	3 cut(s)	92, 178, 413
MlyI	GAGTC	1 cut(s)	13
MnlI	CCTC	5 cut(s)	67, 249, 400, 501, 535
MspI	CCGG	1 cut(s)	100
MspR9I	CCNGG	2 cut(s)	100, 101
MvnI	CGCG	2 cut(s)	117, 119
MwoI	GCNNNNNNNGC	5 cut(s)	278, 377, 457, 566, 575
NciI	CCSGG	2 cut(s)	100, 101
NdeII	GATC	3 cut(s)	199, 330, 360
NlaIII	CATG	3 cut(s)	200, 355, 488
NlaIV	GGNNCC	1 cut(s)	381
PagI	TCATGA	1 cut(s)	196
PciSI	GCTCTTC	1 cut(s)	450
PkrI	GCNGC	2 cut(s)	121, 559
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
PspN4I	GGNNCC	1 cut(s)	381
PstNI	CAGNNNCTG	1 cut(s)	242
PsuI	RGATCY	1 cut(s)	360
SapI	GCTCTTC	1 cut(s)	450
SatI	GCNGC	2 cut(s)	120, 558
Sau3AI	GATC	3 cut(s)	199, 330, 360
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	2 cut(s)	100, 101
SduI	GDGCHC	1 cut(s)	517
SfaNI	GCATC	1 cut(s)	238
SfcI	CTRYAG	1 cut(s)	243
SmaI	CCCGGG	1 cut(s)	101
SmlI	CTYRAG	3 cut(s)	23, 56, 492
SmoI	CTYRAG	3 cut(s)	23, 56, 492
Sse9I	AATT	3 cut(s)	92, 178, 413
SsiI	CCGC	1 cut(s)	119
SspMI	CTAG	2 cut(s)	437, 452
StyD4I	CCNGG	2 cut(s)	98, 99
TaaI	ACNGT	1 cut(s)	244
TasI	AATT	3 cut(s)	92, 178, 413
TauI	GCSGC	1 cut(s)	122
TseI	GCWGC	1 cut(s)	557
TspDTI	ATGAA	6 cut(s)	185, 290, 351, 368, 426, 564
TspGWI	ACGGA	1 cut(s)	179
TspMI	CCCGGG	1 cut(s)	99
XapI	RAATTY	2 cut(s)	92, 178
XmaI	CCCGGG	1 cut(s)	99
XspI	CTAG	2 cut(s)	437, 452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.