Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002348.1

Orthogroup ID

OG0000584

Physical Location & Seq

Genomic Coordinates Forward (+)

12113 .. 12846

Gene Structure 734 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002348.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

atgctggaaagtgccaatgctacaacagaaacagttgatgcattgagaagtggaacagctgtaatgaaggccatgaacaagacaacaaatattgatgatttggagaaaacaatggatgagatcaatgaccagactgaaagtatgaaacagattcaggaggcactgtcggcgcctgttggtgctgcagctgattttgatgaagatgaattggaagcagaacttgaagaactggaagaaactgagttggaggaagagcttatccaaccagccacaactgctcctgcaacttcagttagtgtgaatgtcccggtcggcaggcagccaaccaaaccagctcctcagagagttaaccgtgaggaagatgagctcgctgcattacaggcagagatggccctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000815 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0006810 GO:0006900 GO:0006996 GO:0007032 GO:0008150 GO:0009987 GO:0010008 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0036452 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0061024 GO:0070676 GO:0071840 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

132

Amino Acids

14.32

Weight (kDa)

4.05

Isoelectric Point (pI)

63.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000584)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19830 AT2G19830 AT4G29160 AT4G29160 AT4G29160
fragaria_vesca	FvH4_1g06720 FvH4_1g06720 FvH4_1g06720 FvH4_2g32330 FvH4_2g32330 FvH4_4g20950
malus_domestica	MD02G1072100.v1.1 MD08G1074600.v1.1 MD15G1062300.v1.1 MD15G1201900.v1.1
prunus_persica	Prupe.1G416300_v2.0.a1 Prupe.1G416300_v2.0.a1 Prupe.7G215600_v2.0.a1 Prupe.7G215600_v2.0.a1 Prupe.7G215600_v2.0.a1
pyrus_communis	pycom02g05610 pycom08g06160 pycom15g05890 pycom15g05900 pycom15g17920
rosa_chinensis	RchiOBHm_Chr2g0092461 RchiOBHm_Chr4g0426411 RchiOBHm_Chr4g0426421 RchiOBHm_Chr6g0310361 RchiOBHm_Chr7g0204861 RchiOBHm_Chr7g0204871 RchiOBHm_Chr7g0204891
rosa_laevigata	RLG00000003423 RLG00000003426 RLG00000007295 RLG00000007296 RLG00000010489 RLG00000016312
rosa_multiflora	Rmu_co8485477.1_g000001 Rmu_sc0001361.1_g000025 Rmu_sc0002180.1_g000006 Rmu_sc0002180.1_g000014 Rmu_sc0002180.1_g000015 Rmu_sc0002348.1_g000004 Rmu_sc0007942.1_g000001 Rmu_sc0042068.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149100 Rroxscaffold_3G00252690 Rroxscaffold_7G00158620
rosa_rugosa	Rorug02G0026500 Rorug04G0210700 Rorug04G0211100 Rorug06G0379300 Rorug07G0086400
rosa_samantha	Rh2AG072400 Rh2BG072800 Rh2CG074000 Rh2DG070800 Rh4AG267800 Rh4BG273900 Rh4BG274000 Rh4CG288100 Rh4DG270700 Rh4DG270800 Rh6AG493500 Rh6BG503200 Rh6CG508200 Rh6DG494300 Rh7AG216800 Rh7AG216900 Rh7BG213900 Rh7CG230300 Rh7DG224400 Rh7DG224500 Rh7DG224700
rosa_wichuraiana	Rw2G006030 Rw4G023220 Rw6G042940 Rw7G018790 Rw7G018800 Rw7G018820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	169
AcuI	CTGAAG	1 cut(s)	273
AcyI	GRCGYC	1 cut(s)	170
AgsI	TTSAA	1 cut(s)	224
AluBI	AGCT	5 cut(s)	59, 188, 256, 335, 367
AluI	AGCT	5 cut(s)	59, 188, 256, 335, 367
Alw21I	GWGCWC	1 cut(s)	369
AoxI	GGCC	2 cut(s)	69, 390
ApeKI	GCWGC	4 cut(s)	182, 185, 319, 371
AspLEI	GCGC	1 cut(s)	172
AspS9I	GGNCC	1 cut(s)	391
AsuC2I	CCSGG	1 cut(s)	308
BanI	GGYRCC	1 cut(s)	169
BanII	GRGCYC	1 cut(s)	369
Bbv12I	GWGCWC	1 cut(s)	369
BbvI	GCAGC	4 cut(s)	169, 197, 331, 358
BccI	CCATC	1 cut(s)	382
BcnI	CCSGG	1 cut(s)	308
BfmI	CTRYAG	1 cut(s)	183
BfoI	RGCGCY	1 cut(s)	173
BisI	GCNGC	4 cut(s)	183, 186, 320, 372
BlsI	GCNGC	4 cut(s)	184, 187, 321, 373
Bme1390I	CCNGG	1 cut(s)	308
BmgT120I	GGNCC	1 cut(s)	391
BmiI	GGNNCC	1 cut(s)	171
BmrFI	CCNGG	1 cut(s)	308
BmsI	GCATC	1 cut(s)	28
BpuMI	CCSGG	1 cut(s)	308
BsaHI	GRCGYC	1 cut(s)	170
BsaXI	ACNNNNNCTCC	4 cut(s)	149, 179, 262, 292
Bse1I	ACTGG	1 cut(s)	234
BseGI	GGATG	1 cut(s)	121
BseMII	CTCAG	2 cut(s)	231, 353
BseNI	ACTGG	1 cut(s)	234
BseRI	GAGGAG	1 cut(s)	327
BseXI	GCAGC	4 cut(s)	169, 197, 331, 358
Bsh1285I	CGRYCG	1 cut(s)	312
BshFI	GGCC	2 cut(s)	71, 392
BshNI	GGYRCC	1 cut(s)	169
BsiEI	CGRYCG	1 cut(s)	312
BsiHKAI	GWGCWC	1 cut(s)	369
BsiSI	CCGG	1 cut(s)	308
BslFI	GGGAC	1 cut(s)	290
BsmFI	GGGAC	1 cut(s)	290
BsnI	GGCC	2 cut(s)	71, 392
Bsp1286I	GDGCHC	1 cut(s)	369
Bsp143I	GATC	1 cut(s)	120
BspANI	GGCC	2 cut(s)	71, 392
BspCNI	CTCAG	2 cut(s)	232, 352
BspLI	GGNNCC	1 cut(s)	171
BspMAI	CTGCAG	1 cut(s)	187
BspQI	GCTCTTC	1 cut(s)	246
BspT107I	GGYRCC	1 cut(s)	169
BsrI	ACTGG	1 cut(s)	234
BssMI	GATC	1 cut(s)	120
BssNI	GRCGYC	1 cut(s)	170
Bst4CI	ACNGT	3 cut(s)	34, 165, 353
Bst6I	CTCTTC	1 cut(s)	246
BstACI	GRCGYC	1 cut(s)	170
BstC8I	GCNNGC	2 cut(s)	317, 369
BstDEI	CTNAG	2 cut(s)	240, 339
BstF5I	GGATG	1 cut(s)	121
BstH2I	RGCGCY	1 cut(s)	173
BstHHI	GCGC	1 cut(s)	172
BstKTI	GATC	1 cut(s)	123
BstMBI	GATC	1 cut(s)	120
BstMCI	CGRYCG	1 cut(s)	312
BstMWI	GCNNNNNNNGC	4 cut(s)	167, 275, 380, 389
BstSCI	CCNGG	1 cut(s)	306
BstSFI	CTRYAG	1 cut(s)	183
BstV1I	GCAGC	4 cut(s)	169, 197, 331, 358
BsuRI	GGCC	2 cut(s)	71, 392
BtsCI	GGATG	1 cut(s)	121
BtsIMutI	CAGTG	1 cut(s)	161
Cac8I	GCNNGC	2 cut(s)	317, 369
CfoI	GCGC	1 cut(s)	172
Cfr13I	GGNCC	1 cut(s)	391
CviAII	CATG	1 cut(s)	73
CviJI	RGCY	9 cut(s)	59, 71, 188, 256, 269, 322, 335, 367, 392
CviKI_1	RGCY	9 cut(s)	59, 71, 188, 256, 269, 322, 335, 367, 392
DdeI	CTNAG	2 cut(s)	240, 339
DinI	GGCGCC	1 cut(s)	171
DpnI	GATC	1 cut(s)	122
DpnII	GATC	1 cut(s)	120
Eam1104I	CTCTTC	1 cut(s)	246
EarI	CTCTTC	1 cut(s)	246
Ecl136II	GAGCTC	1 cut(s)	367
Eco24I	GRGCYC	1 cut(s)	369
Eco53kI	GAGCTC	1 cut(s)	367
Eco57I	CTGAAG	1 cut(s)	273
EcoICRI	GAGCTC	1 cut(s)	367
EcoT22I	ATGCAT	1 cut(s)	43
EcoT38I	GRGCYC	1 cut(s)	369
EgeI	GGCGCC	1 cut(s)	171
EheI	GGCGCC	1 cut(s)	171
FaeI	CATG	1 cut(s)	76
FaiI	YATR	2 cut(s)	74, 143
FalI	AAGNNNNNCTT	2 cut(s)	204, 236
FaqI	GGGAC	1 cut(s)	290
FatI	CATG	1 cut(s)	72
Fnu4HI	GCNGC	4 cut(s)	183, 186, 320, 372
FokI	GGATG	1 cut(s)	128
FriOI	GRGCYC	1 cut(s)	369
Fsp4HI	GCNGC	4 cut(s)	183, 186, 320, 372
GlaI	GCGC	1 cut(s)	171
GluI	GCNGC	4 cut(s)	183, 186, 320, 372
HaeII	RGCGCY	1 cut(s)	173
HaeIII	GGCC	2 cut(s)	71, 392
HapII	CCGG	1 cut(s)	308
HhaI	GCGC	1 cut(s)	172
Hin1I	GRCGYC	1 cut(s)	170
Hin1II	CATG	1 cut(s)	76
Hin6I	GCGC	1 cut(s)	170
HinP1I	GCGC	1 cut(s)	170
HincII	GTYRAC	1 cut(s)	349
HindII	GTYRAC	1 cut(s)	349
HinfI	GANTC	1 cut(s)	151
HpaI	GTTAAC	1 cut(s)	349
HpaII	CCGG	1 cut(s)	308
Hpy166II	GTNNAC	1 cut(s)	349
Hpy188I	TCNGA	1 cut(s)	342
Hpy188III	TCNNGA	1 cut(s)	155
Hpy8I	GTNNAC	1 cut(s)	349
HpyAV	CCTTC	1 cut(s)	61
HpyCH4III	ACNGT	3 cut(s)	34, 165, 353
HpyCH4V	TGCA	4 cut(s)	41, 185, 284, 374
HpyF10VI	GCNNNNNNNGC	4 cut(s)	167, 275, 380, 389
HpyF3I	CTNAG	2 cut(s)	240, 339
Hsp92I	GRCGYC	1 cut(s)	170
Hsp92II	CATG	1 cut(s)	76
HspAI	GCGC	1 cut(s)	170
KasI	GGCGCC	1 cut(s)	169
KspAI	GTTAAC	1 cut(s)	349
Kzo9I	GATC	1 cut(s)	120
LguI	GCTCTTC	1 cut(s)	246
LmnI	GCTCC	2 cut(s)	283, 340
Lsp1109I	GCAGC	4 cut(s)	169, 197, 331, 358
LweI	GCATC	1 cut(s)	28
MalI	GATC	1 cut(s)	122
MboI	GATC	1 cut(s)	120
MboII	GAAGA	5 cut(s)	212, 236, 245, 263, 371
MhlI	GDGCHC	1 cut(s)	369
MluCI	AATT	1 cut(s)	206
Mly113I	GGCGCC	1 cut(s)	170
MmeI	TCCRAC	2 cut(s)	225, 286
MnlI	CCTC	4 cut(s)	151, 241, 348, 349
Mph1103I	ATGCAT	1 cut(s)	43
MseI	TTAA	1 cut(s)	348
MspA1I	CMGCKG	2 cut(s)	59, 188
MspI	CCGG	1 cut(s)	308
MspR9I	CCNGG	1 cut(s)	308
MwoI	GCNNNNNNNGC	4 cut(s)	167, 275, 380, 389
NarI	GGCGCC	1 cut(s)	170
NciI	CCSGG	1 cut(s)	308
NdeII	GATC	1 cut(s)	120
NlaIII	CATG	1 cut(s)	76
NlaIV	GGNNCC	1 cut(s)	171
NsiI	ATGCAT	1 cut(s)	43
PciSI	GCTCTTC	1 cut(s)	246
PfeI	GAWTC	1 cut(s)	151
PkrI	GCNGC	4 cut(s)	184, 187, 321, 373
PluTI	GGCGCC	1 cut(s)	173
Psp124BI	GAGCTC	1 cut(s)	369
PspN4I	GGNNCC	1 cut(s)	171
PspPI	GGNCC	1 cut(s)	391
PstI	CTGCAG	1 cut(s)	187
PvuII	CAGCTG	2 cut(s)	59, 188
SacI	GAGCTC	1 cut(s)	369
SapI	GCTCTTC	1 cut(s)	246
SaqAI	TTAA	1 cut(s)	348
SatI	GCNGC	4 cut(s)	183, 186, 320, 372
Sau3AI	GATC	1 cut(s)	120
Sau96I	GGNCC	1 cut(s)	391
ScrFI	CCNGG	1 cut(s)	308
SduI	GDGCHC	1 cut(s)	369
SetI	ASST	5 cut(s)	61, 190, 258, 337, 369
SfaNI	GCATC	1 cut(s)	28
SfcI	CTRYAG	1 cut(s)	183
SfoI	GGCGCC	1 cut(s)	171
Sse9I	AATT	1 cut(s)	206
SspDI	GGCGCC	1 cut(s)	169
SspI	AATATT	1 cut(s)	91
SstI	GAGCTC	1 cut(s)	369
StyD4I	CCNGG	1 cut(s)	306
TaaI	ACNGT	3 cut(s)	34, 165, 353
TasI	AATT	1 cut(s)	206
TfiI	GAWTC	1 cut(s)	151
Tru1I	TTAA	1 cut(s)	348
Tru9I	TTAA	1 cut(s)	348
TscAI	CASTG	1 cut(s)	168
TseI	GCWGC	4 cut(s)	182, 185, 319, 371
TspDTI	ATGAA	5 cut(s)	80, 89, 158, 213, 219
TspRI	CASTG	1 cut(s)	168
Zsp2I	ATGCAT	1 cut(s)	43

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.