Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0000584

Physical Location & Seq

Genomic Coordinates Reverse (-)

20187476 .. 20197889

Gene Structure 10414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG216900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGTTTGCCAGGCTTTTTGGGAAACCTAAAATGGAACCGATCACCTTGGAAAAGTTAAGTGAGAATCTTGAAATGCTTGAGAAAGAGGAGAAAGTACTCCAAAAGAAGGCTGCTGCTGAACTTGAAAAGGCGACGCGATTCAGCAATGCAAAGAATAAAAGAGCTGCTATGCAATCTCTGAAGAAGAAGAGGTTGTATGAACAGCAAATACAGAACAACGGAAACTCCCAATTGCGGGTCCATGATCTGATGATAATGCTAGAAGGTGCAAAAGCCAACATCGAAACTGTAGATGCCTTGAGAACTGGAGCAGCTGCACTGAAGGCAATGCAGAAAGCAGCGAATATAGATGAAGTGGAAAAGACCTTGGACGAGGTTCATGAGCAGACAGAGAAGATGAAACAGATCCAGGAAGCTTTGTCAACTCCAATTGGATATGATGATTTTGATGAGGATGAATTGGAAGCAGACCTTGAAGAGCTGGAAAGTGCCGAGTTGGAACAACTTCTTCAGCCTGCAGCAACTTCTTCAGCTCCAGTGCACCTCCCAGAAGGAAGGCAACCAAATCGTCCTCTTCTCCAGAAGCCCACCGTTGATGAAGAAGATGAACTAGCTGCTTTGCAGGCTGAGATGGCACTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000815 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0006810 GO:0006900 GO:0006996 GO:0007032 GO:0008150 GO:0009987 GO:0010008 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0036452 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0061024 GO:0070676 GO:0071840 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

213

Amino Acids

23.95

Weight (kDa)

4.8

Isoelectric Point (pI)

52.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Snf7	PF03357	17 - 179	3.3e-37	Snf7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000584)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19830 AT2G19830 AT4G29160 AT4G29160 AT4G29160
fragaria_vesca	FvH4_1g06720 FvH4_1g06720 FvH4_1g06720 FvH4_2g32330 FvH4_2g32330 FvH4_4g20950
malus_domestica	MD02G1072100.v1.1 MD08G1074600.v1.1 MD15G1062300.v1.1 MD15G1201900.v1.1
prunus_persica	Prupe.1G416300_v2.0.a1 Prupe.1G416300_v2.0.a1 Prupe.7G215600_v2.0.a1 Prupe.7G215600_v2.0.a1 Prupe.7G215600_v2.0.a1
pyrus_communis	pycom02g05610 pycom08g06160 pycom15g05890 pycom15g05900 pycom15g17920
rosa_chinensis	RchiOBHm_Chr2g0092461 RchiOBHm_Chr4g0426411 RchiOBHm_Chr4g0426421 RchiOBHm_Chr6g0310361 RchiOBHm_Chr7g0204861 RchiOBHm_Chr7g0204871 RchiOBHm_Chr7g0204891
rosa_laevigata	RLG00000003423 RLG00000003426 RLG00000007295 RLG00000007296 RLG00000010489 RLG00000016312
rosa_multiflora	Rmu_co8485477.1_g000001 Rmu_sc0001361.1_g000025 Rmu_sc0002180.1_g000006 Rmu_sc0002180.1_g000014 Rmu_sc0002180.1_g000015 Rmu_sc0002348.1_g000004 Rmu_sc0007942.1_g000001 Rmu_sc0042068.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149100 Rroxscaffold_3G00252690 Rroxscaffold_7G00158620
rosa_rugosa	Rorug02G0026500 Rorug04G0210700 Rorug04G0211100 Rorug06G0379300 Rorug07G0086400
rosa_samantha	Rh2AG072400 Rh2BG072800 Rh2CG074000 Rh2DG070800 Rh4AG267800 Rh4BG273900 Rh4BG274000 Rh4CG288100 Rh4DG270700 Rh4DG270800 Rh6AG493500 Rh6BG503200 Rh6CG508200 Rh6DG494300 Rh7AG216800 Rh7AG216900 Rh7BG213900 Rh7CG230300 Rh7DG224400 Rh7DG224500 Rh7DG224700
rosa_wichuraiana	Rw2G006030 Rw4G023220 Rw6G042940 Rw7G018790 Rw7G018800 Rw7G018820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	136
AciI	CCGC	1 cut(s)	235
AclWI	GGATC	1 cut(s)	400
AcuI	CTGAAG	4 cut(s)	200, 341, 494, 513
AfaI	GTAC	1 cut(s)	96
AfiI	CCNNNNNNNGG	3 cut(s)	106, 234, 235
AgsI	TTSAA	3 cut(s)	71, 125, 476
AjnI	CCWGG	2 cut(s)	8, 408
AluBI	AGCT	6 cut(s)	164, 314, 416, 481, 533, 614
AluI	AGCT	6 cut(s)	164, 314, 416, 481, 533, 614
Alw21I	GWGCWC	1 cut(s)	543
Alw44I	GTGCAC	1 cut(s)	539
AlwI	GGATC	1 cut(s)	400
ApaLI	GTGCAC	1 cut(s)	539
ApeKI	GCWGC	8 cut(s)	110, 113, 164, 311, 314, 338, 518, 614
Asp700I	GAANNNNTTC	1 cut(s)	504
AspS9I	GGNCC	1 cut(s)	238
AsuHPI	GGTGA	1 cut(s)	34
AvaII	GGWCC	1 cut(s)	238
BaeGI	GKGCMC	1 cut(s)	543
Bbv12I	GWGCWC	1 cut(s)	543
BbvI	GCAGC	8 cut(s)	97, 100, 151, 301, 323, 350, 530, 601
BccI	CCATC	1 cut(s)	625
BcgI	CGANNNNNNTGC	2 cut(s)	548, 582
BciT130I	CCWGG	2 cut(s)	10, 410
BfaI	CTAG	2 cut(s)	260, 611
BfmI	CTRYAG	2 cut(s)	288, 516
BisI	GCNGC	8 cut(s)	111, 114, 165, 312, 315, 339, 519, 615
BlsI	GCNGC	8 cut(s)	112, 115, 166, 313, 316, 340, 520, 616
BmcAI	AGTACT	1 cut(s)	96
Bme1390I	CCNGG	2 cut(s)	10, 410
Bme18I	GGWCC	1 cut(s)	238
BmgT120I	GGNCC	1 cut(s)	238
BmiI	GGNNCC	2 cut(s)	36, 239
BmrFI	CCNGG	2 cut(s)	10, 410
BmsI	GCATC	1 cut(s)	283
BpmI	CTGGAG	3 cut(s)	327, 519, 563
BpuEI	CTTGAG	2 cut(s)	98, 319
BsaJI	CCNNGG	2 cut(s)	45, 366
BsaXI	ACNNNNNCTCC	2 cut(s)	209, 239
Bsc4I	CCNNNNNNNGG	3 cut(s)	106, 234, 235
Bse1I	ACTGG	2 cut(s)	310, 536
Bse3DI	GCAATG	2 cut(s)	151, 333
BseBI	CCWGG	2 cut(s)	10, 410
BseDI	CCNNGG	2 cut(s)	45, 366
BseGI	GGATG	1 cut(s)	460
BseLI	CCNNNNNNNGG	3 cut(s)	106, 234, 235
BseMI	GCAATG	2 cut(s)	151, 333
BseMII	CTCAG	1 cut(s)	618
BseNI	ACTGG	2 cut(s)	310, 536
BseRI	GAGGAG	1 cut(s)	101
BseSI	GKGCMC	1 cut(s)	543
BseXI	GCAGC	8 cut(s)	97, 100, 151, 301, 323, 350, 530, 601
BsgI	GTGCAG	1 cut(s)	300
Bsh1236I	CGCG	1 cut(s)	136
BsiHKAI	GWGCWC	1 cut(s)	543
BslI	CCNNNNNNNGG	3 cut(s)	106, 234, 235
Bsp1286I	GDGCHC	1 cut(s)	543
Bsp143I	GATC	3 cut(s)	39, 244, 405
BspACI	CCGC	1 cut(s)	235
BspCNI	CTCAG	1 cut(s)	619
BspFNI	CGCG	1 cut(s)	136
BspHI	TCATGA	1 cut(s)	379
BspLI	GGNNCC	2 cut(s)	36, 239
BspMAI	CTGCAG	1 cut(s)	520
BspPI	GGATC	1 cut(s)	400
BspQI	GCTCTTC	1 cut(s)	471
BsrDI	GCAATG	2 cut(s)	151, 333
BsrI	ACTGG	2 cut(s)	310, 536
BssECI	CCNNGG	2 cut(s)	45, 366
BssMI	GATC	3 cut(s)	39, 244, 405
BssT1I	CCWWGG	2 cut(s)	45, 366
Bst2UI	CCWGG	2 cut(s)	10, 410
Bst4CI	ACNGT	2 cut(s)	289, 592
Bst6I	CTCTTC	3 cut(s)	182, 471, 579
BstC8I	GCNNGC	2 cut(s)	516, 624
BstDEI	CTNAG	1 cut(s)	627
BstF5I	GGATG	1 cut(s)	460
BstFNI	CGCG	1 cut(s)	136
BstKTI	GATC	3 cut(s)	42, 247, 408
BstMBI	GATC	3 cut(s)	39, 244, 405
BstMWI	GCNNNNNNNGC	3 cut(s)	323, 623, 632
BstNI	CCWGG	2 cut(s)	10, 410
BstSCI	CCNGG	2 cut(s)	8, 408
BstSFI	CTRYAG	2 cut(s)	288, 516
BstSLI	GKGCMC	1 cut(s)	543
BstUI	CGCG	1 cut(s)	136
BstV1I	GCAGC	8 cut(s)	97, 100, 151, 301, 323, 350, 530, 601
BstX2I	RGATCY	1 cut(s)	405
BstYI	RGATCY	1 cut(s)	405
BtsCI	GGATG	1 cut(s)	460
BtsIMutI	CAGTG	2 cut(s)	317, 543
Cac8I	GCNNGC	2 cut(s)	516, 624
CciI	TCATGA	1 cut(s)	379
Cfr13I	GGNCC	1 cut(s)	238
CseI	GACGC	1 cut(s)	142
Csp6I	GTAC	1 cut(s)	95
CviAII	CATG	2 cut(s)	242, 380
CviQI	GTAC	1 cut(s)	95
DdeI	CTNAG	1 cut(s)	627
DpnI	GATC	3 cut(s)	41, 246, 407
DpnII	GATC	3 cut(s)	39, 244, 405
Eam1104I	CTCTTC	3 cut(s)	182, 471, 579
EarI	CTCTTC	3 cut(s)	182, 471, 579
Eco130I	CCWWGG	2 cut(s)	45, 366
Eco47I	GGWCC	1 cut(s)	238
Eco57I	CTGAAG	4 cut(s)	200, 341, 494, 513
EcoRII	CCWGG	2 cut(s)	8, 408
EcoT14I	CCWWGG	2 cut(s)	45, 366
ErhI	CCWWGG	2 cut(s)	45, 366
FaeI	CATG	2 cut(s)	245, 383
FaiI	YATR	7 cut(s)	170, 198, 243, 347, 381, 438, 640
FalI	AAGNNNNNCTT	2 cut(s)	456, 488
FatI	CATG	2 cut(s)	241, 379
FauI	CCCGC	1 cut(s)	228
Fnu4HI	GCNGC	8 cut(s)	111, 114, 165, 312, 315, 339, 519, 615
FokI	GGATG	1 cut(s)	467
Fsp4HI	GCNGC	8 cut(s)	111, 114, 165, 312, 315, 339, 519, 615
FspBI	CTAG	2 cut(s)	260, 611
GluI	GCNGC	8 cut(s)	111, 114, 165, 312, 315, 339, 519, 615
GsuI	CTGGAG	3 cut(s)	327, 519, 563
HgaI	GACGC	1 cut(s)	142
Hin1II	CATG	2 cut(s)	245, 383
HincII	GTYRAC	1 cut(s)	423
HindII	GTYRAC	1 cut(s)	423
HindIII	AAGCTT	1 cut(s)	414
HinfI	GANTC	2 cut(s)	64, 138
HphI	GGTGA	1 cut(s)	34
Hpy166II	GTNNAC	2 cut(s)	423, 541
Hpy188I	TCNGA	2 cut(s)	180, 249
Hpy188III	TCNNGA	3 cut(s)	68, 380, 580
Hpy8I	GTNNAC	2 cut(s)	423, 541
Hpy99I	CGWCG	1 cut(s)	136
HpyAV	CCTTC	5 cut(s)	100, 257, 316, 545, 549
HpyCH4III	ACNGT	2 cut(s)	289, 592
HpyCH4V	TGCA	8 cut(s)	149, 172, 269, 317, 331, 518, 541, 622
HpyF10VI	GCNNNNNNNGC	3 cut(s)	323, 623, 632
HpyF3I	CTNAG	1 cut(s)	627
Hsp92II	CATG	2 cut(s)	245, 383
Kzo9I	GATC	3 cut(s)	39, 244, 405
LguI	GCTCTTC	1 cut(s)	471
LmnI	GCTCC	2 cut(s)	308, 538
Lsp1109I	GCAGC	8 cut(s)	97, 100, 151, 301, 323, 350, 530, 601
LweI	GCATC	1 cut(s)	283
MaeI	CTAG	2 cut(s)	260, 611
MalI	GATC	3 cut(s)	41, 246, 407
MboI	GATC	3 cut(s)	39, 244, 405
MfeI	CAATTG	2 cut(s)	230, 429
MflI	RGATCY	1 cut(s)	405
MhlI	GDGCHC	1 cut(s)	543
MluCI	AATT	3 cut(s)	230, 429, 458
MmeI	TCCRAC	1 cut(s)	477
MnlI	CCTC	6 cut(s)	79, 183, 367, 445, 554, 582
MroXI	GAANNNNTTC	1 cut(s)	504
MseI	TTAA	1 cut(s)	56
MspA1I	CMGCKG	1 cut(s)	314
MspR9I	CCNGG	2 cut(s)	10, 410
MunI	CAATTG	2 cut(s)	230, 429
MvaI	CCWGG	2 cut(s)	10, 410
MvnI	CGCG	1 cut(s)	136
MwoI	GCNNNNNNNGC	3 cut(s)	323, 623, 632
NdeII	GATC	3 cut(s)	39, 244, 405
NlaIII	CATG	2 cut(s)	245, 383
NlaIV	GGNNCC	2 cut(s)	36, 239
NmeAIII	GCCGAG	1 cut(s)	517
PagI	TCATGA	1 cut(s)	379
PciSI	GCTCTTC	1 cut(s)	471
PdmI	GAANNNNTTC	1 cut(s)	504
PfeI	GAWTC	2 cut(s)	64, 138
PfoI	TCCNGGA	1 cut(s)	408
PkrI	GCNGC	8 cut(s)	112, 115, 166, 313, 316, 340, 520, 616
Psp6I	CCWGG	2 cut(s)	8, 408
PspGI	CCWGG	2 cut(s)	8, 408
PspN4I	GGNNCC	2 cut(s)	36, 239
PspPI	GGNCC	1 cut(s)	238
PsrI	GAACNNNNNNTAC	2 cut(s)	192, 224
PstI	CTGCAG	1 cut(s)	520
PsuI	RGATCY	1 cut(s)	405
PvuII	CAGCTG	1 cut(s)	314
RsaI	GTAC	1 cut(s)	96
RsaNI	GTAC	1 cut(s)	95
SapI	GCTCTTC	1 cut(s)	471
SaqAI	TTAA	1 cut(s)	56
SatI	GCNGC	8 cut(s)	111, 114, 165, 312, 315, 339, 519, 615
Sau3AI	GATC	3 cut(s)	39, 244, 405
Sau96I	GGNCC	1 cut(s)	238
ScaI	AGTACT	1 cut(s)	96
ScrFI	CCNGG	2 cut(s)	10, 410
SduI	GDGCHC	1 cut(s)	543
SfaNI	GCATC	1 cut(s)	283
SfcI	CTRYAG	2 cut(s)	288, 516
SinI	GGWCC	1 cut(s)	238
SmlI	CTYRAG	2 cut(s)	77, 298
SmoI	CTYRAG	2 cut(s)	77, 298
Sse9I	AATT	3 cut(s)	230, 429, 458
SsiI	CCGC	1 cut(s)	235
SspMI	CTAG	2 cut(s)	260, 611
StyD4I	CCNGG	2 cut(s)	8, 408
StyI	CCWWGG	2 cut(s)	45, 366
TaaI	ACNGT	2 cut(s)	289, 592
TaqI	TCGA	1 cut(s)	282
TasI	AATT	3 cut(s)	230, 429, 458
TatI	WGTACW	1 cut(s)	94
TfiI	GAWTC	2 cut(s)	64, 138
Tru1I	TTAA	1 cut(s)	56
Tru9I	TTAA	1 cut(s)	56
TscAI	CASTG	2 cut(s)	324, 543
TseI	GCWGC	8 cut(s)	110, 113, 164, 311, 314, 338, 518, 614
TspDTI	ATGAA	7 cut(s)	213, 366, 368, 413, 471, 612, 621
TspGWI	ACGGA	1 cut(s)	234
TspRI	CASTG	2 cut(s)	324, 543
VneI	GTGCAC	1 cut(s)	539
VpaK11BI	GGWCC	1 cut(s)	238
XmnI	GAANNNNTTC	1 cut(s)	504
XspI	CTAG	2 cut(s)	260, 611
ZrmI	AGTACT	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.