Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000584

Physical Location & Seq

Genomic Coordinates Forward (+)

14380660 .. 14382736

Gene Structure 2077 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G29160.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGATGAATCGGCTATTCGGGAAACCCAAGCAGGAGGCTAATGCTCTCCAAACTTTAGACAAGCTTAACGAGACGCTTGAGATGCTAGAGAAAAAGGAGAAAGTACTCTTGAAGAAAGCTGGTGCAGAGGTTGAGAAGGCAAAAGAATACTCCCGGGCTAAGAACAAACGAGCGGCTATACAGTGTTTGAAAAGGAAGAGGTTATATGAGGGACAAGTCGAACAGCTTGGGAATTTCCAGCTCCGTATTCATGATCAAATGATTATGTTAGAAGGTGCAAAAGCAACAACCGAAACTGTTGATGCATTGAGGAGTGGAGCTTCTGCAATGAAGGCAATGCAGAAAGCAACAAATATTGATGATGTGGATAAGACCATGGACGAGATCAATGAGCAAACCGAGAACATGAAACAGATCCAAGAAGCATTGGCGACTCCAATGGGGGCAGCGGCTGACTTCGACGAGGATGAGCTTGCAGCAGAGCTTGATGAACTAGAAAGTGAAGAGCTTGAATCGCAACTTCTACAGCCGGCAACAACAGCTCCTCCATTGCCTTCAGTTCCAGTGCCTGCAGGGCGTCAACCGGCTCGTCCTGTTCCCCAGAAGCGGACTGCTGAGGAAGAAGAACTCGCTGCATTACAGGCTGAGATGGCCCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000815 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0006810 GO:0006900 GO:0006996 GO:0007032 GO:0008150 GO:0009987 GO:0010008 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0036452 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0061024 GO:0070676 GO:0071840 GO:0071944 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

219

Amino Acids

24.33

Weight (kDa)

4.89

Isoelectric Point (pI)

53.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Snf7	PF03357	1 - 161	1.9e-46	Snf7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000584)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19830 AT2G19830 AT4G29160 AT4G29160 AT4G29160
fragaria_vesca	FvH4_1g06720 FvH4_1g06720 FvH4_1g06720 FvH4_2g32330 FvH4_2g32330 FvH4_4g20950
malus_domestica	MD02G1072100.v1.1 MD08G1074600.v1.1 MD15G1062300.v1.1 MD15G1201900.v1.1
prunus_persica	Prupe.1G416300_v2.0.a1 Prupe.1G416300_v2.0.a1 Prupe.7G215600_v2.0.a1 Prupe.7G215600_v2.0.a1 Prupe.7G215600_v2.0.a1
pyrus_communis	pycom02g05610 pycom08g06160 pycom15g05890 pycom15g05900 pycom15g17920
rosa_chinensis	RchiOBHm_Chr2g0092461 RchiOBHm_Chr4g0426411 RchiOBHm_Chr4g0426421 RchiOBHm_Chr6g0310361 RchiOBHm_Chr7g0204861 RchiOBHm_Chr7g0204871 RchiOBHm_Chr7g0204891
rosa_laevigata	RLG00000003423 RLG00000003426 RLG00000007295 RLG00000007296 RLG00000010489 RLG00000016312
rosa_multiflora	Rmu_co8485477.1_g000001 Rmu_sc0001361.1_g000025 Rmu_sc0002180.1_g000006 Rmu_sc0002180.1_g000014 Rmu_sc0002180.1_g000015 Rmu_sc0002348.1_g000004 Rmu_sc0007942.1_g000001 Rmu_sc0042068.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149100 Rroxscaffold_3G00252690 Rroxscaffold_7G00158620
rosa_rugosa	Rorug02G0026500 Rorug04G0210700 Rorug04G0211100 Rorug06G0379300 Rorug07G0086400
rosa_samantha	Rh2AG072400 Rh2BG072800 Rh2CG074000 Rh2DG070800 Rh4AG267800 Rh4BG273900 Rh4BG274000 Rh4CG288100 Rh4DG270700 Rh4DG270800 Rh6AG493500 Rh6BG503200 Rh6CG508200 Rh6DG494300 Rh7AG216800 Rh7AG216900 Rh7BG213900 Rh7CG230300 Rh7DG224400 Rh7DG224500 Rh7DG224700
rosa_wichuraiana	Rw2G006030 Rw4G023220 Rw6G042940 Rw7G018790 Rw7G018800 Rw7G018820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	173
AciI	CCGC	3 cut(s)	173, 449, 607
AclWI	GGATC	1 cut(s)	409
AcsI	RAATTY	1 cut(s)	232
AcuI	CTGAAG	1 cut(s)	540
AcyI	GRCGYC	1 cut(s)	577
AfaI	GTAC	1 cut(s)	105
AfiI	CCNNNNNNNGG	1 cut(s)	606
AgsI	TTSAA	3 cut(s)	112, 190, 512
AluBI	AGCT	9 cut(s)	64, 119, 226, 241, 320, 472, 484, 508, 542
AluI	AGCT	9 cut(s)	64, 119, 226, 241, 320, 472, 484, 508, 542
Alw26I	GTCTC	1 cut(s)	65
AlwI	GGATC	1 cut(s)	409
AlwNI	CAGNNNCTG	2 cut(s)	452, 569
Ama87I	CYCGRG	1 cut(s)	153
AoxI	GGCC	1 cut(s)	651
ApeKI	GCWGC	3 cut(s)	446, 476, 632
ApoI	RAATTY	1 cut(s)	232
AspS9I	GGNCC	1 cut(s)	652
AsuC2I	CCSGG	2 cut(s)	154, 155
AvaI	CYCGRG	1 cut(s)	153
BbvCI	CCTCAGC	1 cut(s)	615
BbvI	GCAGC	3 cut(s)	458, 488, 619
BccI	CCATC	1 cut(s)	643
BclI	TGATCA	1 cut(s)	253
BcnI	CCSGG	2 cut(s)	154, 155
BcoDI	GTCTC	1 cut(s)	65
BfaI	CTAG	2 cut(s)	86, 494
BfmI	CTRYAG	2 cut(s)	524, 570
BglI	GCCNNNNNGGC	1 cut(s)	574
BisI	GCNGC	5 cut(s)	174, 447, 450, 477, 633
BlsI	GCNGC	5 cut(s)	175, 448, 451, 478, 634
BmcAI	AGTACT	1 cut(s)	105
Bme1390I	CCNGG	2 cut(s)	154, 155
BmeT110I	CYCGRG	1 cut(s)	153
BmgT120I	GGNCC	1 cut(s)	652
BmrFI	CCNGG	2 cut(s)	154, 155
BmsI	GCATC	2 cut(s)	72, 292
Bpu10I	CCTNAGC	1 cut(s)	615
BpuEI	CTTGAG	1 cut(s)	98
BpuMI	CCSGG	2 cut(s)	154, 155
BsaHI	GRCGYC	1 cut(s)	577
BsaJI	CCNNGG	2 cut(s)	153, 375
BsaXI	ACNNNNNCTCC	4 cut(s)	526, 529, 556, 559
Bsc4I	CCNNNNNNNGG	1 cut(s)	606
Bse118I	RCCGGY	2 cut(s)	529, 583
Bse1I	ACTGG	1 cut(s)	563
Bse3DI	GCAATG	3 cut(s)	333, 342, 548
BseDI	CCNNGG	2 cut(s)	153, 375
BseGI	GGATG	1 cut(s)	472
BseLI	CCNNNNNNNGG	1 cut(s)	606
BseMI	GCAATG	3 cut(s)	333, 342, 548
BseMII	CTCAG	2 cut(s)	606, 636
BseNI	ACTGG	1 cut(s)	563
BseRI	GAGGAG	2 cut(s)	325, 534
BseXI	GCAGC	3 cut(s)	458, 488, 619
BsgI	GTGCAG	1 cut(s)	144
BshFI	GGCC	1 cut(s)	653
BsiHKCI	CYCGRG	1 cut(s)	153
BsiSI	CCGG	3 cut(s)	154, 530, 584
BslFI	GGGAC	1 cut(s)	225
BslI	CCNNNNNNNGG	1 cut(s)	606
BsmAI	GTCTC	1 cut(s)	65
BsmBI	CGTCTC	1 cut(s)	65
BsmFI	GGGAC	1 cut(s)	225
BsnI	GGCC	1 cut(s)	653
BsoBI	CYCGRG	1 cut(s)	153
Bsp143I	GATC	3 cut(s)	253, 384, 414
Bsp19I	CCATGG	1 cut(s)	375
BspACI	CCGC	3 cut(s)	173, 449, 607
BspANI	GGCC	1 cut(s)	653
BspCNI	CTCAG	2 cut(s)	607, 637
BspHI	TCATGA	1 cut(s)	250
BspMAI	CTGCAG	1 cut(s)	574
BspPI	GGATC	1 cut(s)	409
BspQI	GCTCTTC	1 cut(s)	498
BsrBI	CCGCTC	1 cut(s)	173
BsrDI	GCAATG	3 cut(s)	333, 342, 548
BsrFI	RCCGGY	2 cut(s)	529, 583
BsrI	ACTGG	1 cut(s)	563
BssAI	RCCGGY	2 cut(s)	529, 583
BssECI	CCNNGG	2 cut(s)	153, 375
BssMI	GATC	3 cut(s)	253, 384, 414
BssNI	GRCGYC	1 cut(s)	577
BssT1I	CCWWGG	1 cut(s)	375
Bst4CI	ACNGT	2 cut(s)	183, 298
Bst6I	CTCTTC	2 cut(s)	191, 498
BstACI	GRCGYC	1 cut(s)	577
BstC8I	GCNNGC	3 cut(s)	474, 531, 570
BstDEI	CTNAG	3 cut(s)	159, 615, 645
BstDSI	CCRYGG	1 cut(s)	375
BstF5I	GGATG	1 cut(s)	472
BstKTI	GATC	3 cut(s)	256, 387, 417
BstMAI	GTCTC	1 cut(s)	65
BstMBI	GATC	3 cut(s)	253, 384, 414
BstMWI	GCNNNNNNNGC	7 cut(s)	82, 332, 514, 539, 574, 641, 650
BstSCI	CCNGG	2 cut(s)	152, 153
BstSFI	CTRYAG	2 cut(s)	524, 570
BstV1I	GCAGC	3 cut(s)	458, 488, 619
BstX2I	RGATCY	1 cut(s)	414
BstYI	RGATCY	1 cut(s)	414
BsuRI	GGCC	1 cut(s)	653
BtgI	CCRYGG	1 cut(s)	375
BtsCI	GGATG	1 cut(s)	472
BtsIMutI	CAGTG	2 cut(s)	188, 570
Cac8I	GCNNGC	3 cut(s)	474, 531, 570
CaiI	CAGNNNCTG	2 cut(s)	452, 569
CciI	TCATGA	1 cut(s)	250
Cfr10I	RCCGGY	2 cut(s)	529, 583
Cfr13I	GGNCC	1 cut(s)	652
Cfr9I	CCCGGG	1 cut(s)	153
CseI	GACGC	2 cut(s)	82, 566
Csp6I	GTAC	1 cut(s)	104
CviAII	CATG	3 cut(s)	251, 376, 406
CviQI	GTAC	1 cut(s)	104
DdeI	CTNAG	3 cut(s)	159, 615, 645
DpnI	GATC	3 cut(s)	255, 386, 416
DpnII	GATC	3 cut(s)	253, 384, 414
Eam1104I	CTCTTC	2 cut(s)	191, 498
EarI	CTCTTC	2 cut(s)	191, 498
Eco130I	CCWWGG	1 cut(s)	375
Eco57I	CTGAAG	1 cut(s)	540
Eco88I	CYCGRG	1 cut(s)	153
EcoT14I	CCWWGG	1 cut(s)	375
EcoT22I	ATGCAT	1 cut(s)	307
ErhI	CCWWGG	1 cut(s)	375
Esp3I	CGTCTC	1 cut(s)	65
FaeI	CATG	3 cut(s)	254, 379, 409
FaiI	YATR	7 cut(s)	179, 205, 207, 252, 266, 377, 407
FaqI	GGGAC	1 cut(s)	225
FatI	CATG	3 cut(s)	250, 375, 405
FbaI	TGATCA	1 cut(s)	253
Fnu4HI	GCNGC	5 cut(s)	174, 447, 450, 477, 633
FokI	GGATG	1 cut(s)	479
Fsp4HI	GCNGC	5 cut(s)	174, 447, 450, 477, 633
FspBI	CTAG	2 cut(s)	86, 494
GluI	GCNGC	5 cut(s)	174, 447, 450, 477, 633
HaeIII	GGCC	1 cut(s)	653
HapII	CCGG	3 cut(s)	154, 530, 584
HgaI	GACGC	2 cut(s)	82, 566
Hin1I	GRCGYC	1 cut(s)	577
Hin1II	CATG	3 cut(s)	254, 379, 409
HincII	GTYRAC	1 cut(s)	581
HindII	GTYRAC	1 cut(s)	581
HindIII	AAGCTT	1 cut(s)	62
HinfI	GANTC	3 cut(s)	7, 433, 512
HpaII	CCGG	3 cut(s)	154, 530, 584
Hpy166II	GTNNAC	1 cut(s)	581
Hpy188III	TCNNGA	3 cut(s)	19, 109, 251
Hpy8I	GTNNAC	1 cut(s)	581
Hpy99I	CGWCG	1 cut(s)	464
HpyAV	CCTTC	4 cut(s)	130, 266, 325, 564
HpyCH4III	ACNGT	2 cut(s)	183, 298
HpyCH4V	TGCA	8 cut(s)	125, 278, 305, 326, 340, 476, 572, 635
HpyF10VI	GCNNNNNNNGC	7 cut(s)	82, 332, 514, 539, 574, 641, 650
HpyF3I	CTNAG	3 cut(s)	159, 615, 645
Hsp92I	GRCGYC	1 cut(s)	577
Hsp92II	CATG	3 cut(s)	254, 379, 409
KroI	GCCGGC	1 cut(s)	529
KroNI	GCCGGC	1 cut(s)	531
Ksp22I	TGATCA	1 cut(s)	253
Kzo9I	GATC	3 cut(s)	253, 384, 414
LguI	GCTCTTC	1 cut(s)	498
LmnI	GCTCC	3 cut(s)	246, 317, 547
Lsp1109I	GCAGC	3 cut(s)	458, 488, 619
LweI	GCATC	2 cut(s)	72, 292
MaeI	CTAG	2 cut(s)	86, 494
MalI	GATC	3 cut(s)	255, 386, 416
MbiI	CCGCTC	1 cut(s)	173
MboI	GATC	3 cut(s)	253, 384, 414
MboII	GAAGA	5 cut(s)	124, 208, 515, 632, 635
MflI	RGATCY	1 cut(s)	414
MluCI	AATT	1 cut(s)	232
MlyI	GAGTC	1 cut(s)	427
MnlI	CCTC	8 cut(s)	28, 121, 192, 202, 303, 457, 555, 610
Mph1103I	ATGCAT	1 cut(s)	307
MroNI	GCCGGC	1 cut(s)	529
MseI	TTAA	1 cut(s)	66
MspA1I	CMGCKG	1 cut(s)	449
MspI	CCGG	3 cut(s)	154, 530, 584
MspR9I	CCNGG	2 cut(s)	154, 155
MwoI	GCNNNNNNNGC	7 cut(s)	82, 332, 514, 539, 574, 641, 650
NaeI	GCCGGC	1 cut(s)	531
NciI	CCSGG	2 cut(s)	154, 155
NcoI	CCATGG	1 cut(s)	375
NdeII	GATC	3 cut(s)	253, 384, 414
NgoMIV	GCCGGC	1 cut(s)	529
NlaIII	CATG	3 cut(s)	254, 379, 409
NsiI	ATGCAT	1 cut(s)	307
PagI	TCATGA	1 cut(s)	250
PciSI	GCTCTTC	1 cut(s)	498
PdiI	GCCGGC	1 cut(s)	531
PfeI	GAWTC	2 cut(s)	7, 512
PkrI	GCNGC	5 cut(s)	175, 448, 451, 478, 634
PleI	GAGTC	1 cut(s)	427
PpsI	GAGTC	1 cut(s)	427
PspPI	GGNCC	1 cut(s)	652
PstI	CTGCAG	1 cut(s)	574
PstNI	CAGNNNCTG	2 cut(s)	452, 569
PsuI	RGATCY	1 cut(s)	414
RsaI	GTAC	1 cut(s)	105
RsaNI	GTAC	1 cut(s)	104
SapI	GCTCTTC	1 cut(s)	498
SaqAI	TTAA	1 cut(s)	66
SatI	GCNGC	5 cut(s)	174, 447, 450, 477, 633
Sau3AI	GATC	3 cut(s)	253, 384, 414
Sau96I	GGNCC	1 cut(s)	652
SbfI	CCTGCAGG	1 cut(s)	574
ScaI	AGTACT	1 cut(s)	105
SchI	GAGTC	1 cut(s)	427
ScrFI	CCNGG	2 cut(s)	154, 155
SdaI	CCTGCAGG	1 cut(s)	574
SfaNI	GCATC	2 cut(s)	72, 292
SfcI	CTRYAG	2 cut(s)	524, 570
SmaI	CCCGGG	1 cut(s)	155
SmlI	CTYRAG	1 cut(s)	77
SmoI	CTYRAG	1 cut(s)	77
Sse8387I	CCTGCAGG	1 cut(s)	574
Sse9I	AATT	1 cut(s)	232
SsiI	CCGC	3 cut(s)	173, 449, 607
SspI	AATATT	1 cut(s)	355
SspMI	CTAG	2 cut(s)	86, 494
StyD4I	CCNGG	2 cut(s)	152, 153
StyI	CCWWGG	1 cut(s)	375
TaaI	ACNGT	2 cut(s)	183, 298
TaqI	TCGA	2 cut(s)	219, 459
TasI	AATT	1 cut(s)	232
TatI	WGTACW	1 cut(s)	103
TauI	GCSGC	2 cut(s)	176, 452
TfiI	GAWTC	2 cut(s)	7, 512
Tru1I	TTAA	1 cut(s)	66
Tru9I	TTAA	1 cut(s)	66
TscAI	CASTG	2 cut(s)	188, 570
TseI	GCWGC	3 cut(s)	446, 476, 632
TspDTI	ATGAA	5 cut(s)	20, 239, 344, 422, 504
TspGWI	ACGGA	1 cut(s)	233
TspMI	CCCGGG	1 cut(s)	153
TspRI	CASTG	2 cut(s)	188, 570
XapI	RAATTY	1 cut(s)	232
XmaI	CCCGGG	1 cut(s)	153
XspI	CTAG	2 cut(s)	86, 494
ZrmI	AGTACT	1 cut(s)	105
Zsp2I	ATGCAT	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.