Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0000584

Physical Location & Seq

Genomic Coordinates Forward (+)

4722787 .. 4724424

Gene Structure 1638 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g06160.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGTTCAAGCGGGTGTTTGGGAAAGCTAAGCAGGAGGCCAATCCCCTGCCCACGATTCACAAATTAAACGATACGCTTGAGATGCTGGAGAAGAAGGAGAAAGTGCTTGTGAAGAAGGCAGCTCAAGAGGTTGAGAAAGCTAAACAATTTACTCAAGCAAAAAACCGAAATGCGGCGATAAAGTGTTTAAAAAGGAAGAGGCTTTACGAACAACAAATTGAACAGCTTGGGAATTTCCAATTGCGCATTCACGATCAGATGATAATGCTGGAAGGTGCAAACGCTACGACAGAAACTGTTGATGCATTGAGAAGTGGAACCGCTGTAATGAAGGCCATGAACAAGGCCACGAAAATTGATGATTTGGAAAAAACAATGGATGAGATCAATGACCAAACTGAAAGCATGAAACAGATTCAGGATGCACTGTCAGCACCTATCGGTGCAGCAGCTGATTTCGATGAGGATGAATTGGAGGCCGAGCTTGAAGAACTAGAAGGAGCTGAATTGGAGGAGGAGCTTCTCCAGCCAGCCACGAGTGCTCCTGCAGCTCCAGTATATGTAAATCCTGAAGCAGGCAGGCAACCAACCCGACCAGCTCCTCAGAGAAATAACCGTGAGGAAGATGAGCTTGCTGCATTACAGGCAGAGATGGCACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000815 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0006810 GO:0006900 GO:0006996 GO:0007032 GO:0008150 GO:0009987 GO:0010008 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0036452 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0061024 GO:0070676 GO:0071840 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

221

Amino Acids

24.63

Weight (kDa)

4.9

Isoelectric Point (pI)

52.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000584)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19830 AT2G19830 AT4G29160 AT4G29160 AT4G29160
fragaria_vesca	FvH4_1g06720 FvH4_1g06720 FvH4_1g06720 FvH4_2g32330 FvH4_2g32330 FvH4_4g20950
malus_domestica	MD02G1072100.v1.1 MD08G1074600.v1.1 MD15G1062300.v1.1 MD15G1201900.v1.1
prunus_persica	Prupe.1G416300_v2.0.a1 Prupe.1G416300_v2.0.a1 Prupe.7G215600_v2.0.a1 Prupe.7G215600_v2.0.a1 Prupe.7G215600_v2.0.a1
pyrus_communis	pycom02g05610 pycom08g06160 pycom15g05890 pycom15g05900 pycom15g17920
rosa_chinensis	RchiOBHm_Chr2g0092461 RchiOBHm_Chr4g0426411 RchiOBHm_Chr4g0426421 RchiOBHm_Chr6g0310361 RchiOBHm_Chr7g0204861 RchiOBHm_Chr7g0204871 RchiOBHm_Chr7g0204891
rosa_laevigata	RLG00000003423 RLG00000003426 RLG00000007295 RLG00000007296 RLG00000010489 RLG00000016312
rosa_multiflora	Rmu_co8485477.1_g000001 Rmu_sc0001361.1_g000025 Rmu_sc0002180.1_g000006 Rmu_sc0002180.1_g000014 Rmu_sc0002180.1_g000015 Rmu_sc0002348.1_g000004 Rmu_sc0007942.1_g000001 Rmu_sc0042068.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149100 Rroxscaffold_3G00252690 Rroxscaffold_7G00158620
rosa_rugosa	Rorug02G0026500 Rorug04G0210700 Rorug04G0211100 Rorug06G0379300 Rorug07G0086400
rosa_samantha	Rh2AG072400 Rh2BG072800 Rh2CG074000 Rh2DG070800 Rh4AG267800 Rh4BG273900 Rh4BG274000 Rh4CG288100 Rh4DG270700 Rh4DG270800 Rh6AG493500 Rh6BG503200 Rh6CG508200 Rh6DG494300 Rh7AG216800 Rh7AG216900 Rh7BG213900 Rh7CG230300 Rh7DG224400 Rh7DG224500 Rh7DG224700
rosa_wichuraiana	Rw2G006030 Rw4G023220 Rw6G042940 Rw7G018790 Rw7G018800 Rw7G018820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	245
AciI	CCGC	3 cut(s)	10, 173, 321
AcsI	RAATTY	1 cut(s)	232
AcuI	CTGAAG	1 cut(s)	591
AfiI	CCNNNNNNNGG	2 cut(s)	172, 575
AgsI	TTSAA	3 cut(s)	7, 221, 488
AjuI	GAANNNNNNNTTGG	2 cut(s)	231, 263
Alw21I	GWGCWC	1 cut(s)	544
AlwNI	CAGNNNCTG	2 cut(s)	296, 452
AoxI	GGCC	4 cut(s)	36, 333, 345, 477
ApeKI	GCWGC	5 cut(s)	119, 446, 449, 548, 635
ApoI	RAATTY	1 cut(s)	232
AspLEI	GCGC	1 cut(s)	246
BarI	GAAGNNNNNNTAC	2 cut(s)	188, 220
BauI	CACGAG	1 cut(s)	535
Bbv12I	GWGCWC	1 cut(s)	544
BbvI	GCAGC	5 cut(s)	131, 458, 461, 560, 622
BccI	CCATC	1 cut(s)	646
BfaI	CTAG	1 cut(s)	494
BfmI	CTRYAG	1 cut(s)	546
BisI	GCNGC	6 cut(s)	120, 174, 447, 450, 549, 636
BlpI	GCTNAGC	1 cut(s)	27
BlsI	GCNGC	6 cut(s)	121, 175, 448, 451, 550, 637
BmiI	GGNNCC	1 cut(s)	319
BmsI	GCATC	3 cut(s)	72, 292, 412
BpmI	CTGGAG	3 cut(s)	107, 509, 537
Bpu1102I	GCTNAGC	1 cut(s)	27
BpuEI	CTTGAG	3 cut(s)	98, 108, 138
BsaXI	ACNNNNNCTCC	2 cut(s)	526, 556
Bsc4I	CCNNNNNNNGG	2 cut(s)	172, 575
Bse1I	ACTGG	1 cut(s)	554
BseGI	GGATG	3 cut(s)	385, 427, 472
BseLI	CCNNNNNNNGG	2 cut(s)	172, 575
BseMII	CTCAG	1 cut(s)	617
BseNI	ACTGG	1 cut(s)	554
BseRI	GAGGAG	3 cut(s)	527, 530, 591
BseXI	GCAGC	5 cut(s)	131, 458, 461, 560, 622
BsgI	GTGCAG	1 cut(s)	465
BshFI	GGCC	4 cut(s)	38, 335, 347, 479
BsiHKAI	GWGCWC	1 cut(s)	544
BslI	CCNNNNNNNGG	2 cut(s)	172, 575
BsmI	GAATGC	1 cut(s)	246
BsnI	GGCC	4 cut(s)	38, 335, 347, 479
Bsp1286I	GDGCHC	1 cut(s)	544
Bsp143I	GATC	2 cut(s)	253, 384
Bsp1720I	GCTNAGC	1 cut(s)	27
BspACI	CCGC	3 cut(s)	10, 173, 321
BspANI	GGCC	4 cut(s)	38, 335, 347, 479
BspCNI	CTCAG	1 cut(s)	616
BspLI	GGNNCC	1 cut(s)	319
BspMAI	CTGCAG	1 cut(s)	550
BsrI	ACTGG	1 cut(s)	554
BssMI	GATC	2 cut(s)	253, 384
BssSI	CACGAG	1 cut(s)	535
Bst2BI	CACGAG	1 cut(s)	535
Bst4CI	ACNGT	3 cut(s)	298, 429, 617
Bst6I	CTCTTC	1 cut(s)	191
BstC8I	GCNNGC	4 cut(s)	531, 577, 581, 633
BstDEI	CTNAG	2 cut(s)	27, 603
BstENI	CCTNNNNNAGG	1 cut(s)	573
BstF5I	GGATG	3 cut(s)	385, 427, 472
BstHHI	GCGC	1 cut(s)	246
BstKTI	GATC	2 cut(s)	256, 387
BstMBI	GATC	2 cut(s)	253, 384
BstMWI	GCNNNNNNNGC	7 cut(s)	82, 431, 526, 539, 548, 644, 653
BstSFI	CTRYAG	1 cut(s)	546
BstV1I	GCAGC	5 cut(s)	131, 458, 461, 560, 622
BsuRI	GGCC	4 cut(s)	38, 335, 347, 479
BtsCI	GGATG	3 cut(s)	385, 427, 472
BtsIMutI	CAGTG	1 cut(s)	425
Cac8I	GCNNGC	4 cut(s)	531, 577, 581, 633
CaiI	CAGNNNCTG	2 cut(s)	296, 452
CfoI	GCGC	1 cut(s)	246
CspCI	CAANNNNNGTGG	2 cut(s)	337, 372
CviAII	CATG	2 cut(s)	337, 406
DdeI	CTNAG	2 cut(s)	27, 603
DpnI	GATC	2 cut(s)	255, 386
DpnII	GATC	2 cut(s)	253, 384
DraI	TTTAAA	1 cut(s)	189
Eam1104I	CTCTTC	1 cut(s)	191
EarI	CTCTTC	1 cut(s)	191
Eco57I	CTGAAG	1 cut(s)	591
EcoNI	CCTNNNNNAGG	1 cut(s)	573
EcoT22I	ATGCAT	1 cut(s)	307
FaeI	CATG	2 cut(s)	340, 409
FaiI	YATR	4 cut(s)	338, 407, 559, 561
FalI	AAGNNNNNCTT	2 cut(s)	615, 647
FatI	CATG	2 cut(s)	336, 405
FauI	CCCGC	1 cut(s)	3
Fnu4HI	GCNGC	6 cut(s)	120, 174, 447, 450, 549, 636
FokI	GGATG	3 cut(s)	392, 434, 479
Fsp4HI	GCNGC	6 cut(s)	120, 174, 447, 450, 549, 636
FspBI	CTAG	1 cut(s)	494
FspI	TGCGCA	1 cut(s)	245
GlaI	GCGC	1 cut(s)	245
GluI	GCNGC	6 cut(s)	120, 174, 447, 450, 549, 636
GsuI	CTGGAG	3 cut(s)	107, 509, 537
HaeIII	GGCC	4 cut(s)	38, 335, 347, 479
HhaI	GCGC	1 cut(s)	246
Hin1II	CATG	2 cut(s)	340, 409
Hin6I	GCGC	1 cut(s)	244
HinP1I	GCGC	1 cut(s)	244
HinfI	GANTC	2 cut(s)	55, 415
Hpy188I	TCNGA	2 cut(s)	258, 606
Hpy188III	TCNNGA	4 cut(s)	125, 251, 419, 569
HpyAV	CCTTC	5 cut(s)	88, 109, 266, 325, 491
HpyCH4III	ACNGT	3 cut(s)	298, 429, 617
HpyCH4V	TGCA	6 cut(s)	278, 305, 425, 446, 548, 638
HpyF10VI	GCNNNNNNNGC	7 cut(s)	82, 431, 526, 539, 548, 644, 653
HpyF3I	CTNAG	2 cut(s)	27, 603
Hsp92II	CATG	2 cut(s)	340, 409
HspAI	GCGC	1 cut(s)	244
Kzo9I	GATC	2 cut(s)	253, 384
LmnI	GCTCC	5 cut(s)	500, 517, 547, 556, 604
Lsp1109I	GCAGC	5 cut(s)	131, 458, 461, 560, 622
LweI	GCATC	3 cut(s)	72, 292, 412
MaeI	CTAG	1 cut(s)	494
MalI	GATC	2 cut(s)	255, 386
MboI	GATC	2 cut(s)	253, 384
MboII	GAAGA	5 cut(s)	103, 124, 208, 500, 635
MfeI	CAATTG	1 cut(s)	239
MhlI	GDGCHC	1 cut(s)	544
MluCI	AATT	8 cut(s)	62, 146, 216, 232, 239, 354, 470, 506
MnlI	CCTC	9 cut(s)	28, 121, 192, 457, 469, 505, 508, 612, 613
Mph1103I	ATGCAT	1 cut(s)	307
MseI	TTAA	3 cut(s)	65, 188, 661
MspA1I	CMGCKG	2 cut(s)	323, 452
MunI	CAATTG	1 cut(s)	239
Mva1269I	GAATGC	1 cut(s)	246
MwoI	GCNNNNNNNGC	7 cut(s)	82, 431, 526, 539, 548, 644, 653
NdeII	GATC	2 cut(s)	253, 384
NlaIII	CATG	2 cut(s)	340, 409
NlaIV	GGNNCC	1 cut(s)	319
NmeAIII	GCCGAG	1 cut(s)	505
NsbI	TGCGCA	1 cut(s)	245
NsiI	ATGCAT	1 cut(s)	307
PctI	GAATGC	1 cut(s)	246
PfeI	GAWTC	2 cut(s)	55, 415
PkrI	GCNGC	6 cut(s)	121, 175, 448, 451, 550, 637
PspN4I	GGNNCC	1 cut(s)	319
PstI	CTGCAG	1 cut(s)	550
PstNI	CAGNNNCTG	2 cut(s)	296, 452
PvuII	CAGCTG	1 cut(s)	452
SaqAI	TTAA	3 cut(s)	65, 188, 661
SatI	GCNGC	6 cut(s)	120, 174, 447, 450, 549, 636
Sau3AI	GATC	2 cut(s)	253, 384
SduI	GDGCHC	1 cut(s)	544
SfaNI	GCATC	3 cut(s)	72, 292, 412
SfcI	CTRYAG	1 cut(s)	546
SmlI	CTYRAG	3 cut(s)	77, 123, 153
SmoI	CTYRAG	3 cut(s)	77, 123, 153
Sse9I	AATT	8 cut(s)	62, 146, 216, 232, 239, 354, 470, 506
SsiI	CCGC	3 cut(s)	10, 173, 321
SspMI	CTAG	1 cut(s)	494
TaaI	ACNGT	3 cut(s)	298, 429, 617
TaqI	TCGA	1 cut(s)	459
TasI	AATT	8 cut(s)	62, 146, 216, 232, 239, 354, 470, 506
TauI	GCSGC	1 cut(s)	176
TfiI	GAWTC	2 cut(s)	55, 415
Tru1I	TTAA	3 cut(s)	65, 188, 661
Tru9I	TTAA	3 cut(s)	65, 188, 661
TscAI	CASTG	1 cut(s)	432
TseI	GCWGC	5 cut(s)	119, 446, 449, 548, 635
TspDTI	ATGAA	4 cut(s)	344, 353, 422, 483
TspRI	CASTG	1 cut(s)	432
XagI	CCTNNNNNAGG	1 cut(s)	573
XapI	RAATTY	1 cut(s)	232
XspI	CTAG	1 cut(s)	494
Zsp2I	ATGCAT	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.