Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000584

Physical Location & Seq

Genomic Coordinates Reverse (-)

52536741 .. 52538007

Gene Structure 1267 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0379300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGACGACAAGACAGGCGGCATCATCATCATCATCAGTGGGGAAGATGAAGTGCATATCTTGCCAGGAGAACTACGACGCACGTGACGCCGGCACGTGCAAGGAGTGCTACGAGGAGGCCAACGAGACCGAGGAGGAGCTCAAGCGCGAGATCGACGACCTCAAGGCCAAGGTCGCCTTCCTCAAGTTCTCCACTCGCTCCCAACCCATCTCCTTCTCCGACGTCGTTTTGGTCGCCTCCCAGGATCCCTCCGCCGCAGGGCCCTCCGTCCCCGTTCCGGCCCATAAGGCCGTTTTGGCGAGTCGTTCCCCGGTGTTCAGAGCTATGCTTGAGAATCAGATGGAGGAAAGCCTGAGTGGCACAATCAAGATCGGTGATGTGTCCTATGATGCCCTTCGTGCCTTTGTCAACTACCTCTACACAGCTGAGATATGCCTCGATGAGGAAATGGCCTGCGACCTCCTAATATTGGCTGAAAAGTACCAGGTGCAGCATCTCAAGGACTACTGCGAGAAGTTCTTGGTGTCCAAGCTGAACTGGGACAACTCAATATTGAGCTACACCTTTGCACACCAGCACAATGCCAAGCATATAGTTGATGCAGCCTTGACTTTGATCACAGACAACATGGACAAGCTTACTACGCGTGAGGAGTACATGGAGCTGGTGGAGAAAGATCCACGACTCGTGGTGGAAGTCTACGAGGCTTATCTGTCGAAACAGATCAATACTGCAGCCCAAAAGGATTCTTCTGCACGAGTTGGTCCTGCAGTTAAGCCACCCCTCCGTGATGCCTTTAGTGATCTAATCTATAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000815 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0006810 GO:0006900 GO:0006996 GO:0007032 GO:0008150 GO:0009987 GO:0010008 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0036452 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0061024 GO:0070676 GO:0071840 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

272

Amino Acids

30.43

Weight (kDa)

4.97

Isoelectric Point (pI)

50.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BTB	PF00651	70 - 177	1.6e-25	BTB/POZ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000584)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19830 AT2G19830 AT4G29160 AT4G29160 AT4G29160
fragaria_vesca	FvH4_1g06720 FvH4_1g06720 FvH4_1g06720 FvH4_2g32330 FvH4_2g32330 FvH4_4g20950
malus_domestica	MD02G1072100.v1.1 MD08G1074600.v1.1 MD15G1062300.v1.1 MD15G1201900.v1.1
prunus_persica	Prupe.1G416300_v2.0.a1 Prupe.1G416300_v2.0.a1 Prupe.7G215600_v2.0.a1 Prupe.7G215600_v2.0.a1 Prupe.7G215600_v2.0.a1
pyrus_communis	pycom02g05610 pycom08g06160 pycom15g05890 pycom15g05900 pycom15g17920
rosa_chinensis	RchiOBHm_Chr2g0092461 RchiOBHm_Chr4g0426411 RchiOBHm_Chr4g0426421 RchiOBHm_Chr6g0310361 RchiOBHm_Chr7g0204861 RchiOBHm_Chr7g0204871 RchiOBHm_Chr7g0204891
rosa_laevigata	RLG00000003423 RLG00000003426 RLG00000007295 RLG00000007296 RLG00000010489 RLG00000016312
rosa_multiflora	Rmu_co8485477.1_g000001 Rmu_sc0001361.1_g000025 Rmu_sc0002180.1_g000006 Rmu_sc0002180.1_g000014 Rmu_sc0002180.1_g000015 Rmu_sc0002348.1_g000004 Rmu_sc0007942.1_g000001 Rmu_sc0042068.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149100 Rroxscaffold_3G00252690 Rroxscaffold_7G00158620
rosa_rugosa	Rorug02G0026500 Rorug04G0210700 Rorug04G0211100 Rorug06G0379300 Rorug07G0086400
rosa_samantha	Rh2AG072400 Rh2BG072800 Rh2CG074000 Rh2DG070800 Rh4AG267800 Rh4BG273900 Rh4BG274000 Rh4CG288100 Rh4DG270700 Rh4DG270800 Rh6AG493500 Rh6BG503200 Rh6CG508200 Rh6DG494300 Rh7AG216800 Rh7AG216900 Rh7BG213900 Rh7CG230300 Rh7DG224400 Rh7DG224500 Rh7DG224700
rosa_wichuraiana	Rw2G006030 Rw4G023220 Rw6G042940 Rw7G018790 Rw7G018800 Rw7G018820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	225
AccI	GTMKAC	1 cut(s)	699
AccII	CGCG	2 cut(s)	147, 646
AciI	CCGC	3 cut(s)	17, 252, 255
AclWI	GGATC	3 cut(s)	239, 252, 671
AcvI	CACGTG	2 cut(s)	83, 96
AcyI	GRCGYC	2 cut(s)	87, 222
AfaI	GTAC	2 cut(s)	482, 656
AfiI	CCNNNNNNNGG	4 cut(s)	258, 277, 442, 469
AflIII	ACRYGT	1 cut(s)	644
AjnI	CCWGG	3 cut(s)	63, 240, 483
AjuI	GAANNNNNNNTTGG	2 cut(s)	161, 193
AluBI	AGCT	7 cut(s)	139, 323, 425, 532, 558, 637, 664
AluI	AGCT	7 cut(s)	139, 323, 425, 532, 558, 637, 664
Alw21I	GWGCWC	1 cut(s)	141
Alw26I	GTCTC	1 cut(s)	119
AlwI	GGATC	3 cut(s)	239, 252, 671
AoxI	GGCC	6 cut(s)	117, 165, 260, 279, 288, 450
ApaI	GGGCCC	1 cut(s)	264
ApeKI	GCWGC	3 cut(s)	490, 602, 734
AspLEI	GCGC	1 cut(s)	147
AspS9I	GGNCC	4 cut(s)	260, 261, 280, 764
AsuC2I	CCSGG	1 cut(s)	311
AsuHPI	GGTGA	1 cut(s)	386
AvaII	GGWCC	1 cut(s)	764
BaeGI	GKGCMC	1 cut(s)	264
BamHI	GGATCC	1 cut(s)	244
BanII	GRGCYC	2 cut(s)	141, 264
BauI	CACGAG	2 cut(s)	686, 756
BbrPI	CACGTG	2 cut(s)	83, 96
Bbv12I	GWGCWC	1 cut(s)	141
BbvI	GCAGC	3 cut(s)	502, 614, 746
BccI	CCATC	2 cut(s)	215, 334
BceAI	ACGGC	1 cut(s)	275
BciT130I	CCWGG	3 cut(s)	65, 242, 485
BclI	TGATCA	1 cut(s)	615
BcnI	CCSGG	1 cut(s)	311
BcoDI	GTCTC	1 cut(s)	119
BfmI	CTRYAG	2 cut(s)	732, 768
BglI	GCCNNNNNGGC	3 cut(s)	287, 296, 357
BisI	GCNGC	5 cut(s)	18, 255, 491, 603, 735
BlsI	GCNGC	5 cut(s)	19, 256, 492, 604, 736
Bme1390I	CCNGG	4 cut(s)	65, 242, 311, 485
Bme18I	GGWCC	1 cut(s)	764
BmgT120I	GGNCC	4 cut(s)	260, 261, 280, 764
BmiI	GGNNCC	2 cut(s)	246, 262
BmrFI	CCNGG	4 cut(s)	65, 242, 311, 485
BmrI	ACTGGG	1 cut(s)	547
BmsI	GCATC	5 cut(s)	29, 379, 502, 589, 781
BmuI	ACTGGG	1 cut(s)	547
BpuEI	CTTGAG	5 cut(s)	125, 146, 167, 350, 482
BpuMI	CCSGG	1 cut(s)	311
BsaAI	YACGTR	2 cut(s)	83, 96
BsaHI	GRCGYC	2 cut(s)	87, 222
BsaI	GGTCTC	1 cut(s)	119
BsaJI	CCNNGG	4 cut(s)	129, 168, 240, 309
Bsc4I	CCNNNNNNNGG	4 cut(s)	258, 277, 442, 469
Bse118I	RCCGGY	1 cut(s)	89
Bse1I	ACTGG	1 cut(s)	542
BseBI	CCWGG	3 cut(s)	65, 242, 485
BseDI	CCNNGG	4 cut(s)	129, 168, 240, 309
BseLI	CCNNNNNNNGG	4 cut(s)	258, 277, 442, 469
BseMII	CTCAG	2 cut(s)	344, 417
BseNI	ACTGG	1 cut(s)	542
BseRI	GAGGAG	4 cut(s)	128, 146, 149, 665
BseSI	GKGCMC	1 cut(s)	264
BseXI	GCAGC	3 cut(s)	502, 614, 746
BsgI	GTGCAG	2 cut(s)	509, 738
Bsh1236I	CGCG	2 cut(s)	147, 646
BshFI	GGCC	6 cut(s)	119, 167, 262, 281, 290, 452
BsiHKAI	GWGCWC	1 cut(s)	141
BsiSI	CCGG	3 cut(s)	90, 278, 311
BslFI	GGGAC	2 cut(s)	254, 554
BslI	CCNNNNNNNGG	4 cut(s)	258, 277, 442, 469
BsmAI	GTCTC	1 cut(s)	119
BsmFI	GGGAC	2 cut(s)	254, 554
BsnI	GGCC	6 cut(s)	119, 167, 262, 281, 290, 452
Bso31I	GGTCTC	1 cut(s)	119
Bsp120I	GGGCCC	1 cut(s)	260
Bsp1286I	GDGCHC	2 cut(s)	141, 264
Bsp143I	GATC	7 cut(s)	150, 244, 369, 615, 676, 723, 802
BspACI	CCGC	3 cut(s)	17, 252, 255
BspANI	GGCC	6 cut(s)	119, 167, 262, 281, 290, 452
BspCNI	CTCAG	2 cut(s)	345, 418
BspFNI	CGCG	2 cut(s)	147, 646
BspLI	GGNNCC	2 cut(s)	246, 262
BspMAI	CTGCAG	2 cut(s)	736, 772
BspPI	GGATC	3 cut(s)	239, 252, 671
BspTNI	GGTCTC	1 cut(s)	119
BsrFI	RCCGGY	1 cut(s)	89
BsrI	ACTGG	1 cut(s)	542
BssAI	RCCGGY	1 cut(s)	89
BssECI	CCNNGG	4 cut(s)	129, 168, 240, 309
BssMI	GATC	7 cut(s)	150, 244, 369, 615, 676, 723, 802
BssNI	GRCGYC	2 cut(s)	87, 222
BssSI	CACGAG	2 cut(s)	686, 756
BssT1I	CCWWGG	1 cut(s)	168
Bst2BI	CACGAG	2 cut(s)	686, 756
Bst2UI	CCWGG	3 cut(s)	65, 242, 485
BstACI	GRCGYC	2 cut(s)	87, 222
BstAPI	GCANNNNNTGC	2 cut(s)	60, 105
BstBAI	YACGTR	2 cut(s)	83, 96
BstC8I	GCNNGC	2 cut(s)	91, 454
BstDEI	CTNAG	2 cut(s)	353, 426
BstENI	CCTNNNNNAGG	1 cut(s)	440
BstFNI	CGCG	2 cut(s)	147, 646
BstHHI	GCGC	1 cut(s)	147
BstKTI	GATC	7 cut(s)	153, 247, 372, 618, 679, 726, 805
BstMAI	GTCTC	1 cut(s)	119
BstMBI	GATC	7 cut(s)	150, 244, 369, 615, 676, 723, 802
BstMWI	GCNNNNNNNGC	9 cut(s)	60, 86, 105, 173, 287, 296, 357, 398, 643
BstNI	CCWGG	3 cut(s)	65, 242, 485
BstSCI	CCNGG	4 cut(s)	63, 240, 309, 483
BstSFI	CTRYAG	2 cut(s)	732, 768
BstSLI	GKGCMC	1 cut(s)	264
BstUI	CGCG	2 cut(s)	147, 646
BstV1I	GCAGC	3 cut(s)	502, 614, 746
BstX2I	RGATCY	2 cut(s)	244, 676
BstYI	RGATCY	2 cut(s)	244, 676
BsuRI	GGCC	6 cut(s)	119, 167, 262, 281, 290, 452
BtsIMutI	CAGTG	1 cut(s)	42
Cac8I	GCNNGC	2 cut(s)	91, 454
CfoI	GCGC	1 cut(s)	147
Cfr10I	RCCGGY	1 cut(s)	89
Cfr13I	GGNCC	4 cut(s)	260, 261, 280, 764
CseI	GACGC	2 cut(s)	86, 95
CsiI	ACCWGGT	1 cut(s)	483
Csp6I	GTAC	2 cut(s)	481, 655
CviAII	CATG	2 cut(s)	628, 658
CviQI	GTAC	2 cut(s)	481, 655
DdeI	CTNAG	2 cut(s)	353, 426
DpnI	GATC	7 cut(s)	152, 246, 371, 617, 678, 725, 804
DpnII	GATC	7 cut(s)	150, 244, 369, 615, 676, 723, 802
EciI	GGCGGA	1 cut(s)	241
Ecl136II	GAGCTC	1 cut(s)	139
Eco130I	CCWWGG	1 cut(s)	168
Eco24I	GRGCYC	2 cut(s)	141, 264
Eco31I	GGTCTC	1 cut(s)	119
Eco47I	GGWCC	1 cut(s)	764
Eco53kI	GAGCTC	1 cut(s)	139
Eco72I	CACGTG	2 cut(s)	83, 96
EcoICRI	GAGCTC	1 cut(s)	139
EcoNI	CCTNNNNNAGG	1 cut(s)	440
EcoO109I	RGGNCCY	2 cut(s)	260, 261
EcoRII	CCWGG	3 cut(s)	63, 240, 483
EcoT14I	CCWWGG	1 cut(s)	168
EcoT38I	GRGCYC	2 cut(s)	141, 264
ErhI	CCWWGG	1 cut(s)	168
FaeI	CATG	2 cut(s)	631, 661
FalI	AAGNNNNNCTT	2 cut(s)	161, 193
FaqI	GGGAC	2 cut(s)	254, 554
FatI	CATG	2 cut(s)	627, 657
FbaI	TGATCA	1 cut(s)	615
FblI	GTMKAC	1 cut(s)	699
Fnu4HI	GCNGC	5 cut(s)	18, 255, 491, 603, 735
FriOI	GRGCYC	2 cut(s)	141, 264
Fsp4HI	GCNGC	5 cut(s)	18, 255, 491, 603, 735
GlaI	GCGC	1 cut(s)	146
GluI	GCNGC	5 cut(s)	18, 255, 491, 603, 735
HaeIII	GGCC	6 cut(s)	119, 167, 262, 281, 290, 452
HapII	CCGG	3 cut(s)	90, 278, 311
HgaI	GACGC	2 cut(s)	86, 95
HhaI	GCGC	1 cut(s)	147
Hin1I	GRCGYC	2 cut(s)	87, 222
Hin1II	CATG	2 cut(s)	631, 661
Hin6I	GCGC	1 cut(s)	145
HinP1I	GCGC	1 cut(s)	145
HincII	GTYRAC	1 cut(s)	409
HindII	GTYRAC	1 cut(s)	409
HindIII	AAGCTT	1 cut(s)	635
HinfI	GANTC	4 cut(s)	301, 334, 684, 746
HpaII	CCGG	3 cut(s)	90, 278, 311
HphI	GGTGA	1 cut(s)	386
Hpy166II	GTNNAC	2 cut(s)	409, 700
Hpy188I	TCNGA	3 cut(s)	220, 320, 339
Hpy188III	TCNNGA	1 cut(s)	367
Hpy8I	GTNNAC	2 cut(s)	409, 700
Hpy99I	CGWCG	4 cut(s)	80, 158, 224, 227
HpyAV	CCTTC	3 cut(s)	187, 223, 404
HpyCH4IV	ACGT	3 cut(s)	82, 95, 222
HpyCH4V	TGCA	8 cut(s)	54, 99, 490, 569, 602, 734, 755, 770
HpyF10VI	GCNNNNNNNGC	9 cut(s)	60, 86, 105, 173, 287, 296, 357, 398, 643
HpyF3I	CTNAG	2 cut(s)	353, 426
HpySE526I	ACGT	3 cut(s)	82, 95, 222
Hsp92I	GRCGYC	2 cut(s)	87, 222
Hsp92II	CATG	2 cut(s)	631, 661
HspAI	GCGC	1 cut(s)	145
KroI	GCCGGC	1 cut(s)	89
KroNI	GCCGGC	1 cut(s)	91
Ksp22I	TGATCA	1 cut(s)	615
Kzo9I	GATC	7 cut(s)	150, 244, 369, 615, 676, 723, 802
LmnI	GCTCC	3 cut(s)	136, 203, 661
Lsp1109I	GCAGC	3 cut(s)	502, 614, 746
LweI	GCATC	5 cut(s)	29, 379, 502, 589, 781
MabI	ACCWGGT	1 cut(s)	483
MaeII	ACGT	3 cut(s)	82, 95, 222
MaeIII	GTNAC	1 cut(s)	83
MalI	GATC	7 cut(s)	152, 246, 371, 617, 678, 725, 804
MboI	GATC	7 cut(s)	150, 244, 369, 615, 676, 723, 802
MboII	GAAGA	2 cut(s)	55, 741
MflI	RGATCY	2 cut(s)	244, 676
MhlI	GDGCHC	2 cut(s)	141, 264
MluI	ACGCGT	1 cut(s)	644
MlyI	GAGTC	2 cut(s)	310, 678
MmeI	TCCRAC	1 cut(s)	243
MroNI	GCCGGC	1 cut(s)	89
MseI	TTAA	1 cut(s)	774
MspA1I	CMGCKG	1 cut(s)	425
MspI	CCGG	3 cut(s)	90, 278, 311
MspR9I	CCNGG	4 cut(s)	65, 242, 311, 485
MvaI	CCWGG	3 cut(s)	65, 242, 485
MvnI	CGCG	2 cut(s)	147, 646
MwoI	GCNNNNNNNGC	9 cut(s)	60, 86, 105, 173, 287, 296, 357, 398, 643
NaeI	GCCGGC	1 cut(s)	91
NciI	CCSGG	1 cut(s)	311
NdeII	GATC	7 cut(s)	150, 244, 369, 615, 676, 723, 802
NgoMIV	GCCGGC	1 cut(s)	89
NlaIII	CATG	2 cut(s)	631, 661
NlaIV	GGNNCC	2 cut(s)	246, 262
NmuCI	GTSAC	1 cut(s)	83
PdiI	GCCGGC	1 cut(s)	91
PfeI	GAWTC	2 cut(s)	334, 746
PkrI	GCNGC	5 cut(s)	19, 256, 492, 604, 736
PleI	GAGTC	2 cut(s)	309, 678
PmaCI	CACGTG	2 cut(s)	83, 96
PmlI	CACGTG	2 cut(s)	83, 96
PpsI	GAGTC	2 cut(s)	309, 678
Ppu21I	YACGTR	2 cut(s)	83, 96
Psp124BI	GAGCTC	1 cut(s)	141
Psp6I	CCWGG	3 cut(s)	63, 240, 483
PspCI	CACGTG	2 cut(s)	83, 96
PspGI	CCWGG	3 cut(s)	63, 240, 483
PspN4I	GGNNCC	2 cut(s)	246, 262
PspOMI	GGGCCC	1 cut(s)	260
PspPI	GGNCC	4 cut(s)	260, 261, 280, 764
PstI	CTGCAG	2 cut(s)	736, 772
PsuI	RGATCY	2 cut(s)	244, 676
PvuII	CAGCTG	1 cut(s)	425
RsaI	GTAC	2 cut(s)	482, 656
RsaNI	GTAC	2 cut(s)	481, 655
SacI	GAGCTC	1 cut(s)	141
SaqAI	TTAA	1 cut(s)	774
SatI	GCNGC	5 cut(s)	18, 255, 491, 603, 735
Sau3AI	GATC	7 cut(s)	150, 244, 369, 615, 676, 723, 802
Sau96I	GGNCC	4 cut(s)	260, 261, 280, 764
SchI	GAGTC	2 cut(s)	310, 678
ScrFI	CCNGG	4 cut(s)	65, 242, 311, 485
SduI	GDGCHC	2 cut(s)	141, 264
SexAI	ACCWGGT	1 cut(s)	483
SfaNI	GCATC	5 cut(s)	29, 379, 502, 589, 781
SfcI	CTRYAG	2 cut(s)	732, 768
SfiI	GGCCNNNNNGGCC	1 cut(s)	287
SinI	GGWCC	1 cut(s)	764
SmlI	CTYRAG	5 cut(s)	140, 161, 182, 329, 497
SmoI	CTYRAG	5 cut(s)	140, 161, 182, 329, 497
SsiI	CCGC	3 cut(s)	17, 252, 255
SspI	AATATT	2 cut(s)	468, 552
SstI	GAGCTC	1 cut(s)	141
StyD4I	CCNGG	4 cut(s)	63, 240, 309, 483
StyI	CCWWGG	1 cut(s)	168
TaiI	ACGT	3 cut(s)	85, 98, 225
TaqI	TCGA	3 cut(s)	153, 438, 716
TaqII	GACCGA	1 cut(s)	143
TatI	WGTACW	1 cut(s)	654
TauI	GCSGC	2 cut(s)	20, 257
TfiI	GAWTC	2 cut(s)	334, 746
Tru1I	TTAA	1 cut(s)	774
Tru9I	TTAA	1 cut(s)	774
TscAI	CASTG	1 cut(s)	42
TseFI	GTSAC	1 cut(s)	83
TseI	GCWGC	3 cut(s)	490, 602, 734
Tsp45I	GTSAC	1 cut(s)	83
TspDTI	ATGAA	1 cut(s)	62
TspGWI	ACGGA	2 cut(s)	256, 776
TspRI	CASTG	1 cut(s)	42
VpaK11BI	GGWCC	1 cut(s)	764
XagI	CCTNNNNNAGG	1 cut(s)	440
XmiI	GTMKAC	1 cut(s)	699
ZraI	GACGTC	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.