Rh4BG273900

Belongs to the SNF7 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000584
Physical Location & Seq
Forward (+)
44781335 .. 44781652
318 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG273900.1

Sequence Viewer

Length: 318 bp
ATGTTAGACAAGTTACATGAGACGCTTGGGATGCTTGAGAAAAAAGAGATCGGACTAGAGAAGAAGGCTGCTGTTGAATTTGAAAGGGCCAAAGAATTCGCCAGAGCAAAGAATAAAAGCTGTGCTATACAATGTTTGAAGAGGAAGAGGATGTTCAAAAAGCAAATAGAGAAAGTTGGAAATTTCCGATTGCGAATCCATAATCAGATGATGATCCTACAAGGTGAAAAAATGAAGGCAATGCAGAAAGCAATCAACATTGATGACGTGGATAAGACCGTAGATGAGATTAATGAGAAACAGATCCAGGAAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 ko04217 map04144 map04217
Pfam Domains
Protein Families
Snf7

Protein Analysis

105

Amino Acids

12.32

Weight (kDa)

9.52

Isoelectric Point (pI)

40.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Snf7 PF03357 4 - 75 3.6e-10 Snf7
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000584)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19830 AT2G19830 AT4G29160 AT4G29160 AT4G29160
fragaria_vesca FvH4_1g06720 FvH4_1g06720 FvH4_1g06720 FvH4_2g32330 FvH4_2g32330 FvH4_4g20950
malus_domestica MD02G1072100.v1.1 MD08G1074600.v1.1 MD15G1062300.v1.1 MD15G1201900.v1.1
prunus_persica Prupe.1G416300_v2.0.a1 Prupe.1G416300_v2.0.a1 Prupe.7G215600_v2.0.a1 Prupe.7G215600_v2.0.a1 Prupe.7G215600_v2.0.a1
pyrus_communis pycom02g05610 pycom08g06160 pycom15g05890 pycom15g05900 pycom15g17920
rosa_chinensis RchiOBHm_Chr2g0092461 RchiOBHm_Chr4g0426411 RchiOBHm_Chr4g0426421 RchiOBHm_Chr6g0310361 RchiOBHm_Chr7g0204861 RchiOBHm_Chr7g0204871 RchiOBHm_Chr7g0204891
rosa_laevigata RLG00000003423 RLG00000003426 RLG00000007295 RLG00000007296 RLG00000010489 RLG00000016312
rosa_multiflora Rmu_co8485477.1_g000001 Rmu_sc0001361.1_g000025 Rmu_sc0002180.1_g000006 Rmu_sc0002180.1_g000014 Rmu_sc0002180.1_g000015 Rmu_sc0002348.1_g000004 Rmu_sc0007942.1_g000001 Rmu_sc0042068.1_g000001
rosa_roxburghii Rroxscaffold_2G00149100 Rroxscaffold_3G00252690 Rroxscaffold_7G00158620
rosa_rugosa Rorug02G0026500 Rorug04G0210700 Rorug04G0211100 Rorug06G0379300 Rorug07G0086400
rosa_samantha Rh2AG072400 Rh2BG072800 Rh2CG074000 Rh2DG070800 Rh4AG267800 Rh4BG273900 Rh4BG274000 Rh4CG288100 Rh4DG270700 Rh4DG270800 Rh6AG493500 Rh6BG503200 Rh6CG508200 Rh6DG494300 Rh7AG216800 Rh7AG216900 Rh7BG213900 Rh7CG230300 Rh7DG224400 Rh7DG224500 Rh7DG224700
rosa_wichuraiana Rw2G006030 Rw4G023220 Rw6G042940 Rw7G018790 Rw7G018800 Rw7G018820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 208, 298
AcsI RAATTY 3 cut(s) 77, 95, 181
AgsI TTSAA 4 cut(s) 77, 83, 139, 157
AjiI CACGTC 1 cut(s) 268
AjnI CCWGG 1 cut(s) 306
AluBI AGCT 2 cut(s) 120, 314
AluI AGCT 2 cut(s) 120, 314
Alw26I GTCTC 1 cut(s) 14
AlwI GGATC 2 cut(s) 208, 298
AoxI GGCC 1 cut(s) 87
ApeKI GCWGC 1 cut(s) 68
ApoI RAATTY 3 cut(s) 77, 95, 181
AseI ATTAAT 1 cut(s) 291
AspS9I GGNCC 1 cut(s) 87
AsuHPI GGTGA 1 cut(s) 236
BbvI GCAGC 1 cut(s) 55
BciT130I CCWGG 1 cut(s) 308
BcoDI GTCTC 1 cut(s) 14
BfaI CTAG 1 cut(s) 56
BisI GCNGC 1 cut(s) 69
BlsI GCNGC 1 cut(s) 70
Bme1390I CCNGG 1 cut(s) 308
BmgBI CACGTC 1 cut(s) 268
BmgT120I GGNCC 1 cut(s) 87
BmrFI CCNGG 1 cut(s) 308
BmsI GCATC 1 cut(s) 21
BpuEI CTTGAG 1 cut(s) 56
BsaBI GATNNNNATC 1 cut(s) 212
Bse3DI GCAATG 1 cut(s) 246
Bse8I GATNNNNATC 1 cut(s) 212
BseBI CCWGG 1 cut(s) 308
BseGI GGATG 2 cut(s) 36, 156
BseJI GATNNNNATC 1 cut(s) 212
BseMI GCAATG 1 cut(s) 246
BseXI GCAGC 1 cut(s) 55
BshFI GGCC 1 cut(s) 89
BsmAI GTCTC 1 cut(s) 14
BsmBI CGTCTC 1 cut(s) 14
BsnI GGCC 1 cut(s) 89
Bsp143I GATC 3 cut(s) 48, 213, 303
BspANI GGCC 1 cut(s) 89
BspPI GGATC 2 cut(s) 208, 298
BsrDI GCAATG 1 cut(s) 246
BssMI GATC 3 cut(s) 48, 213, 303
Bst2UI CCWGG 1 cut(s) 308
Bst4CI ACNGT 1 cut(s) 280
Bst6I CTCTTC 2 cut(s) 134, 140
BstF5I GGATG 2 cut(s) 36, 156
BstKTI GATC 3 cut(s) 51, 216, 306
BstMAI GTCTC 1 cut(s) 14
BstMBI GATC 3 cut(s) 48, 213, 303
BstMWI GCNNNNNNNGC 1 cut(s) 31
BstNI CCWGG 1 cut(s) 308
BstSCI CCNGG 1 cut(s) 306
BstV1I GCAGC 1 cut(s) 55
BstX2I RGATCY 1 cut(s) 303
BstYI RGATCY 1 cut(s) 303
BsuRI GGCC 1 cut(s) 89
BtrI CACGTC 1 cut(s) 268
BtsCI GGATG 2 cut(s) 36, 156
Cfr13I GGNCC 1 cut(s) 87
CseI GACGC 1 cut(s) 31
CviAII CATG 1 cut(s) 17
CviJI RGCY 4 cut(s) 68, 89, 120, 314
CviKI_1 RGCY 4 cut(s) 68, 89, 120, 314
DpnI GATC 3 cut(s) 50, 215, 305
DpnII GATC 3 cut(s) 48, 213, 303
Eam1104I CTCTTC 2 cut(s) 134, 140
EarI CTCTTC 2 cut(s) 134, 140
EcoRI GAATTC 1 cut(s) 95
EcoRII CCWGG 1 cut(s) 306
Esp3I CGTCTC 1 cut(s) 14
FaeI CATG 1 cut(s) 20
FaiI YATR 3 cut(s) 18, 128, 201
FatI CATG 1 cut(s) 16
Fnu4HI GCNGC 1 cut(s) 69
FokI GGATG 2 cut(s) 43, 163
Fsp4HI GCNGC 1 cut(s) 69
FspBI CTAG 1 cut(s) 56
GluI GCNGC 1 cut(s) 69
HaeIII GGCC 1 cut(s) 89
HgaI GACGC 1 cut(s) 31
Hin1II CATG 1 cut(s) 20
HindIII AAGCTT 1 cut(s) 312
HinfI GANTC 1 cut(s) 195
HphI GGTGA 1 cut(s) 236
Hpy188I TCNGA 3 cut(s) 53, 188, 207
HpyAV CCTTC 2 cut(s) 58, 229
HpyCH4III ACNGT 1 cut(s) 280
HpyCH4IV ACGT 1 cut(s) 267
HpyCH4V TGCA 1 cut(s) 244
HpyF10VI GCNNNNNNNGC 1 cut(s) 31
HpySE526I ACGT 1 cut(s) 267
Hsp92II CATG 1 cut(s) 20
Kzo9I GATC 3 cut(s) 48, 213, 303
LpnPI CCDG 2 cut(s) 115, 293
Lsp1109I GCAGC 1 cut(s) 55
LweI GCATC 1 cut(s) 21
MaeI CTAG 1 cut(s) 56
MaeII ACGT 1 cut(s) 267
MaeIII GTNAC 1 cut(s) 12
MalI GATC 3 cut(s) 50, 215, 305
MboI GATC 3 cut(s) 48, 213, 303
MboII GAAGA 3 cut(s) 73, 151, 157
MflI RGATCY 1 cut(s) 303
MluCI AATT 3 cut(s) 77, 95, 181
MmeI TCCRAC 1 cut(s) 157
MnlI CCTC 2 cut(s) 135, 141
MseI TTAA 2 cut(s) 291, 316
MspR9I CCNGG 1 cut(s) 308
MvaI CCWGG 1 cut(s) 308
MwoI GCNNNNNNNGC 1 cut(s) 31
NdeII GATC 3 cut(s) 48, 213, 303
NlaIII CATG 1 cut(s) 20
PfeI GAWTC 1 cut(s) 195
PfoI TCCNGGA 1 cut(s) 306
PkrI GCNGC 1 cut(s) 70
PshBI ATTAAT 1 cut(s) 291
Psp6I CCWGG 1 cut(s) 306
PspGI CCWGG 1 cut(s) 306
PspPI GGNCC 1 cut(s) 87
PsuI RGATCY 1 cut(s) 303
SaqAI TTAA 2 cut(s) 291, 316
SatI GCNGC 1 cut(s) 69
Sau3AI GATC 3 cut(s) 48, 213, 303
Sau96I GGNCC 1 cut(s) 87
ScrFI CCNGG 1 cut(s) 308
SetI ASST 4 cut(s) 122, 226, 270, 316
SfaNI GCATC 1 cut(s) 21
SgeI CNNG 8 cut(s) 22, 29, 38, 47, 68, 114, 233, 280
SmlI CTYRAG 1 cut(s) 35
SmoI CTYRAG 1 cut(s) 35
Sse9I AATT 3 cut(s) 77, 95, 181
SspMI CTAG 1 cut(s) 56
StyD4I CCNGG 1 cut(s) 306
TaaI ACNGT 1 cut(s) 280
TaiI ACGT 1 cut(s) 270
TasI AATT 3 cut(s) 77, 95, 181
TfiI GAWTC 1 cut(s) 195
Tru1I TTAA 2 cut(s) 291, 316
Tru9I TTAA 2 cut(s) 291, 316
TseI GCWGC 1 cut(s) 68
TspDTI ATGAA 1 cut(s) 248
VspI ATTAAT 1 cut(s) 291
XapI RAATTY 3 cut(s) 77, 95, 181
XspI CTAG 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.