pycom15g05900

Belongs to the SNF7 family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Forward (+)
3563100 .. 3563562
463 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g05900.2

Sequence Viewer

Length: 297 bp
ATGGATGAGATCAATGACCAAACTGAAAGCATGAAACAAATTCAGGAGGCATTGTCAGCACCTATCGGTGCAGCAGCTGATTTCGATGAGGATGAATTGGAAGCAGAGCTTGAAGAACTAGAAGGAGCTGAATTGGAGGAGGAGCTTCTTCAGCCAGCCACAAGTGCTCCCACAGCTCCCACACCTCCAGTATCTGTAAATCCTGAAGTAGGCAGGCAGCCAACACGACCAGCTCCTCAAAGAAATAACCGTGAGGAAGATGAGCTTGCTGCATTACAGGCAGAGATGGCACTTTAA

Protein Analysis

99

Amino Acids

10.64

Weight (kDa)

4.05

Isoelectric Point (pI)

70.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000584)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19830 AT2G19830 AT4G29160 AT4G29160 AT4G29160
fragaria_vesca FvH4_1g06720 FvH4_1g06720 FvH4_1g06720 FvH4_2g32330 FvH4_2g32330 FvH4_4g20950
malus_domestica MD02G1072100.v1.1 MD08G1074600.v1.1 MD15G1062300.v1.1 MD15G1201900.v1.1
prunus_persica Prupe.1G416300_v2.0.a1 Prupe.1G416300_v2.0.a1 Prupe.7G215600_v2.0.a1 Prupe.7G215600_v2.0.a1 Prupe.7G215600_v2.0.a1
pyrus_communis pycom02g05610 pycom08g06160 pycom15g05890 pycom15g05900 pycom15g17920
rosa_chinensis RchiOBHm_Chr2g0092461 RchiOBHm_Chr4g0426411 RchiOBHm_Chr4g0426421 RchiOBHm_Chr6g0310361 RchiOBHm_Chr7g0204861 RchiOBHm_Chr7g0204871 RchiOBHm_Chr7g0204891
rosa_laevigata RLG00000003423 RLG00000003426 RLG00000007295 RLG00000007296 RLG00000010489 RLG00000016312
rosa_multiflora Rmu_co8485477.1_g000001 Rmu_sc0001361.1_g000025 Rmu_sc0002180.1_g000006 Rmu_sc0002180.1_g000014 Rmu_sc0002180.1_g000015 Rmu_sc0002348.1_g000004 Rmu_sc0007942.1_g000001 Rmu_sc0042068.1_g000001
rosa_roxburghii Rroxscaffold_2G00149100 Rroxscaffold_3G00252690 Rroxscaffold_7G00158620
rosa_rugosa Rorug02G0026500 Rorug04G0210700 Rorug04G0211100 Rorug06G0379300 Rorug07G0086400
rosa_samantha Rh2AG072400 Rh2BG072800 Rh2CG074000 Rh2DG070800 Rh4AG267800 Rh4BG273900 Rh4BG274000 Rh4CG288100 Rh4DG270700 Rh4DG270800 Rh6AG493500 Rh6BG503200 Rh6CG508200 Rh6DG494300 Rh7AG216800 Rh7AG216900 Rh7BG213900 Rh7CG230300 Rh7DG224400 Rh7DG224500 Rh7DG224700
rosa_wichuraiana Rw2G006030 Rw4G023220 Rw6G042940 Rw7G018790 Rw7G018800 Rw7G018820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 39
AcuI CTGAAG 2 cut(s) 134, 225
AfiI CCNNNNNNNGG 1 cut(s) 209
AgsI TTSAA 1 cut(s) 113
AluBI AGCT 7 cut(s) 77, 109, 128, 145, 176, 233, 265
AluI AGCT 7 cut(s) 77, 109, 128, 145, 176, 233, 265
Alw21I GWGCWC 1 cut(s) 169
AlwNI CAGNNNCTG 2 cut(s) 77, 194
ApeKI GCWGC 4 cut(s) 71, 74, 217, 269
ApoI RAATTY 1 cut(s) 39
Bbv12I GWGCWC 1 cut(s) 169
BbvI GCAGC 4 cut(s) 83, 86, 229, 256
BccI CCATC 1 cut(s) 280
BfaI CTAG 1 cut(s) 119
BisI GCNGC 4 cut(s) 72, 75, 218, 270
BlsI GCNGC 4 cut(s) 73, 76, 219, 271
BpmI CTGGAG 1 cut(s) 171
BsaXI ACNNNNNCTCC 4 cut(s) 38, 68, 151, 181
Bsc4I CCNNNNNNNGG 1 cut(s) 209
Bse1I ACTGG 1 cut(s) 188
BseGI GGATG 2 cut(s) 10, 97
BseLI CCNNNNNNNGG 1 cut(s) 209
BseNI ACTGG 1 cut(s) 188
BseRI GAGGAG 3 cut(s) 152, 155, 225
BseXI GCAGC 4 cut(s) 83, 86, 229, 256
BsgI GTGCAG 1 cut(s) 90
BsiHKAI GWGCWC 1 cut(s) 169
BslI CCNNNNNNNGG 1 cut(s) 209
Bsp1286I GDGCHC 1 cut(s) 169
Bsp143I GATC 1 cut(s) 9
BsrI ACTGG 1 cut(s) 188
BssMI GATC 1 cut(s) 9
Bst4CI ACNGT 1 cut(s) 251
BstC8I GCNNGC 3 cut(s) 156, 215, 267
BstENI CCTNNNNNAGG 1 cut(s) 207
BstF5I GGATG 2 cut(s) 10, 97
BstKTI GATC 1 cut(s) 12
BstMBI GATC 1 cut(s) 9
BstMWI GCNNNNNNNGC 6 cut(s) 56, 151, 164, 173, 278, 287
BstV1I GCAGC 4 cut(s) 83, 86, 229, 256
BtsCI GGATG 2 cut(s) 10, 97
Cac8I GCNNGC 3 cut(s) 156, 215, 267
CaiI CAGNNNCTG 2 cut(s) 77, 194
CviAII CATG 1 cut(s) 31
DpnI GATC 1 cut(s) 11
DpnII GATC 1 cut(s) 9
Eco57I CTGAAG 2 cut(s) 134, 225
EcoNI CCTNNNNNAGG 1 cut(s) 207
FaeI CATG 1 cut(s) 34
FaiI YATR 1 cut(s) 32
FalI AAGNNNNNCTT 4 cut(s) 93, 125, 249, 281
FatI CATG 1 cut(s) 30
Fnu4HI GCNGC 4 cut(s) 72, 75, 218, 270
FokI GGATG 2 cut(s) 17, 104
Fsp4HI GCNGC 4 cut(s) 72, 75, 218, 270
FspBI CTAG 1 cut(s) 119
GluI GCNGC 4 cut(s) 72, 75, 218, 270
GsuI CTGGAG 1 cut(s) 171
Hin1II CATG 1 cut(s) 34
Hpy188III TCNNGA 2 cut(s) 44, 203
HpyAV CCTTC 1 cut(s) 116
HpyCH4III ACNGT 1 cut(s) 251
HpyCH4V TGCA 2 cut(s) 71, 272
HpyF10VI GCNNNNNNNGC 6 cut(s) 56, 151, 164, 173, 278, 287
Hsp92II CATG 1 cut(s) 34
Kzo9I GATC 1 cut(s) 9
LmnI GCTCC 5 cut(s) 125, 142, 172, 181, 238
LpnPI CCDG 7 cut(s) 29, 168, 199, 201, 216, 243, 263
Lsp1109I GCAGC 4 cut(s) 83, 86, 229, 256
MaeI CTAG 1 cut(s) 119
MalI GATC 1 cut(s) 11
MboI GATC 1 cut(s) 9
MboII GAAGA 3 cut(s) 125, 140, 269
MhlI GDGCHC 1 cut(s) 169
MluCI AATT 3 cut(s) 39, 95, 131
MnlI CCTC 7 cut(s) 40, 82, 130, 133, 195, 246, 247
MseI TTAA 1 cut(s) 295
MspA1I CMGCKG 1 cut(s) 77
MwoI GCNNNNNNNGC 6 cut(s) 56, 151, 164, 173, 278, 287
NdeII GATC 1 cut(s) 9
NlaIII CATG 1 cut(s) 34
PkrI GCNGC 4 cut(s) 73, 76, 219, 271
PstNI CAGNNNCTG 2 cut(s) 77, 194
PvuII CAGCTG 1 cut(s) 77
SaqAI TTAA 1 cut(s) 295
SatI GCNGC 4 cut(s) 72, 75, 218, 270
Sau3AI GATC 1 cut(s) 9
SduI GDGCHC 1 cut(s) 169
SetI ASST 9 cut(s) 64, 79, 111, 130, 147, 178, 187, 235, 267
Sse9I AATT 3 cut(s) 39, 95, 131
SspMI CTAG 1 cut(s) 119
TaaI ACNGT 1 cut(s) 251
TaqI TCGA 1 cut(s) 84
TasI AATT 3 cut(s) 39, 95, 131
Tru1I TTAA 1 cut(s) 295
Tru9I TTAA 1 cut(s) 295
TseI GCWGC 4 cut(s) 71, 74, 217, 269
TspDTI ATGAA 2 cut(s) 47, 108
XagI CCTNNNNNAGG 1 cut(s) 207
XapI RAATTY 1 cut(s) 39
XspI CTAG 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.