Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0000584

Physical Location & Seq

Genomic Coordinates Reverse (-)

3541335 .. 3544381

Gene Structure 3047 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g06720.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGTTTACCAGGATTTTTGGGAAACCGAAAACGGAAACCAGCGCTCTGACCACCTTAGACAAGTTAAATGAGACGCTTGAAATGCTTGAGAAGAAGGAGAAGGTACTACAGAAGAAGGCTGCCGCAGAAGTTGAGAGGGCCAAGGAATTCACTAGAGCAAAGAATAAACGATCTGCTATTCAATGTTTGAAGAGGAAGAAGCTGTATGAACAGCAAATAGAGCAGCTTGGAAACTTCCAACTGCGAATCCACGATCAGATGATAATGCTAGAAGGGGCGAAAGCCACTACAGAAACTGTAGATGCCTTGAGAACTGGAGCAGCTGCCATGAAGGCAATGCAGAAAGCAACGAACATAGATGACGTGGACAAGACCATGGATGAGATAAATGAACAGACTGAGAACATGAAACAGATCCAGGAAGCTCTGTCAACTCCAATTGGTTCAGCAGCTGATTTTGATGAGGATGAATTGGAAGCAGAACTTGAAGAGCTGGAAGGTGCTGAGTTGGAAGAACAACTTCTTCAGCCTGCAACTCAAGCTCCTGCAGCTCCAGTGCAGGTCCCAGCAGGAAGGCAACCAGCACGTCCTCTTCCCCAGAAGCGCACTGCCGAAGAAGATGAACTGGCTGCTCTGCAGGCTGAGATGGCACTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000815 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0006810 GO:0006900 GO:0006996 GO:0007032 GO:0008150 GO:0009987 GO:0010008 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0036452 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0061024 GO:0070676 GO:0071840 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

219

Amino Acids

24.35

Weight (kDa)

4.85

Isoelectric Point (pI)

48.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Snf7	PF03357	20 - 186	5.3e-47	Snf7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000584)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19830 AT2G19830 AT4G29160 AT4G29160 AT4G29160
fragaria_vesca	FvH4_1g06720 FvH4_1g06720 FvH4_1g06720 FvH4_2g32330 FvH4_2g32330 FvH4_4g20950
malus_domestica	MD02G1072100.v1.1 MD08G1074600.v1.1 MD15G1062300.v1.1 MD15G1201900.v1.1
prunus_persica	Prupe.1G416300_v2.0.a1 Prupe.1G416300_v2.0.a1 Prupe.7G215600_v2.0.a1 Prupe.7G215600_v2.0.a1 Prupe.7G215600_v2.0.a1
pyrus_communis	pycom02g05610 pycom08g06160 pycom15g05890 pycom15g05900 pycom15g17920
rosa_chinensis	RchiOBHm_Chr2g0092461 RchiOBHm_Chr4g0426411 RchiOBHm_Chr4g0426421 RchiOBHm_Chr6g0310361 RchiOBHm_Chr7g0204861 RchiOBHm_Chr7g0204871 RchiOBHm_Chr7g0204891
rosa_laevigata	RLG00000003423 RLG00000003426 RLG00000007295 RLG00000007296 RLG00000010489 RLG00000016312
rosa_multiflora	Rmu_co8485477.1_g000001 Rmu_sc0001361.1_g000025 Rmu_sc0002180.1_g000006 Rmu_sc0002180.1_g000014 Rmu_sc0002180.1_g000015 Rmu_sc0002348.1_g000004 Rmu_sc0007942.1_g000001 Rmu_sc0042068.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149100 Rroxscaffold_3G00252690 Rroxscaffold_7G00158620
rosa_rugosa	Rorug02G0026500 Rorug04G0210700 Rorug04G0211100 Rorug06G0379300 Rorug07G0086400
rosa_samantha	Rh2AG072400 Rh2BG072800 Rh2CG074000 Rh2DG070800 Rh4AG267800 Rh4BG273900 Rh4BG274000 Rh4CG288100 Rh4DG270700 Rh4DG270800 Rh6AG493500 Rh6BG503200 Rh6CG508200 Rh6DG494300 Rh7AG216800 Rh7AG216900 Rh7BG213900 Rh7CG230300 Rh7DG224400 Rh7DG224500 Rh7DG224700
rosa_wichuraiana	Rw2G006030 Rw4G023220 Rw6G042940 Rw7G018790 Rw7G018800 Rw7G018820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	550
AciI	CCGC	1 cut(s)	123
AclWI	GGATC	1 cut(s)	409
AcsI	RAATTY	1 cut(s)	146
AcuI	CTGAAG	1 cut(s)	509
AfaI	GTAC	1 cut(s)	105
AfeI	AGCGCT	1 cut(s)	43
AgsI	TTSAA	4 cut(s)	80, 182, 190, 488
AjiI	CACGTC	2 cut(s)	364, 587
AjnI	CCWGG	2 cut(s)	8, 417
AluBI	AGCT	8 cut(s)	202, 226, 323, 425, 452, 493, 542, 551
AluI	AGCT	8 cut(s)	202, 226, 323, 425, 452, 493, 542, 551
Alw26I	GTCTC	1 cut(s)	65
AlwI	GGATC	1 cut(s)	409
AlwNI	CAGNNNCTG	2 cut(s)	296, 452
Aor51HI	AGCGCT	1 cut(s)	43
AoxI	GGCC	1 cut(s)	138
ApeKI	GCWGC	7 cut(s)	119, 223, 320, 323, 449, 548, 629
ApoI	RAATTY	1 cut(s)	146
Asp700I	GAANNNNTTC	1 cut(s)	519
AspLEI	GCGC	2 cut(s)	44, 606
AspS9I	GGNCC	2 cut(s)	138, 562
AvaII	GGWCC	1 cut(s)	562
BbvI	GCAGC	7 cut(s)	106, 235, 310, 332, 461, 560, 616
BccI	CCATC	1 cut(s)	640
BciT130I	CCWGG	2 cut(s)	10, 419
BcoDI	GTCTC	1 cut(s)	65
BfaI	CTAG	2 cut(s)	153, 269
BfmI	CTRYAG	5 cut(s)	107, 288, 297, 546, 635
BfoI	RGCGCY	1 cut(s)	45
BfuAI	ACCTGC	1 cut(s)	550
BglI	GCCNNNNNGGC	1 cut(s)	332
BisI	GCNGC	8 cut(s)	120, 123, 224, 321, 324, 450, 549, 630
BlsI	GCNGC	8 cut(s)	121, 124, 225, 322, 325, 451, 550, 631
Bme1390I	CCNGG	2 cut(s)	10, 419
Bme18I	GGWCC	1 cut(s)	562
BmgBI	CACGTC	2 cut(s)	364, 587
BmgT120I	GGNCC	2 cut(s)	138, 562
BmiI	GGNNCC	1 cut(s)	564
BmrFI	CCNGG	2 cut(s)	10, 419
BmsI	GCATC	1 cut(s)	292
BpmI	CTGGAG	2 cut(s)	336, 537
BpuEI	CTTGAG	3 cut(s)	107, 328, 522
BsaJI	CCNNGG	2 cut(s)	141, 375
BsaXI	ACNNNNNCTCC	2 cut(s)	526, 556
Bse1I	ACTGG	3 cut(s)	319, 554, 630
Bse3DI	GCAATG	1 cut(s)	342
BseBI	CCWGG	2 cut(s)	10, 419
BseDI	CCNNGG	2 cut(s)	141, 375
BseGI	GGATG	2 cut(s)	385, 472
BseMI	GCAATG	1 cut(s)	342
BseMII	CTCAG	3 cut(s)	390, 495, 633
BseNI	ACTGG	3 cut(s)	319, 554, 630
BseXI	GCAGC	7 cut(s)	106, 235, 310, 332, 461, 560, 616
BseYI	CCCAGC	1 cut(s)	565
BsgI	GTGCAG	1 cut(s)	578
BshFI	GGCC	1 cut(s)	140
BslFI	GGGAC	1 cut(s)	548
BsmAI	GTCTC	1 cut(s)	65
BsmBI	CGTCTC	1 cut(s)	65
BsmFI	GGGAC	1 cut(s)	548
BsnI	GGCC	1 cut(s)	140
Bsp143I	GATC	3 cut(s)	170, 253, 414
Bsp19I	CCATGG	1 cut(s)	375
BspACI	CCGC	1 cut(s)	123
BspANI	GGCC	1 cut(s)	140
BspCNI	CTCAG	3 cut(s)	391, 496, 634
BspLI	GGNNCC	1 cut(s)	564
BspMAI	CTGCAG	2 cut(s)	550, 639
BspMI	ACCTGC	1 cut(s)	550
BspPI	GGATC	1 cut(s)	409
BspQI	GCTCTTC	1 cut(s)	483
BsrDI	GCAATG	1 cut(s)	342
BsrI	ACTGG	3 cut(s)	319, 554, 630
BssECI	CCNNGG	2 cut(s)	141, 375
BssMI	GATC	3 cut(s)	170, 253, 414
BssT1I	CCWWGG	2 cut(s)	141, 375
Bst2UI	CCWGG	2 cut(s)	10, 419
Bst4CI	ACNGT	1 cut(s)	298
Bst6I	CTCTTC	3 cut(s)	185, 483, 597
BstC8I	GCNNGC	2 cut(s)	531, 639
BstDEI	CTNAG	4 cut(s)	55, 399, 504, 642
BstDSI	CCRYGG	1 cut(s)	375
BstF5I	GGATG	2 cut(s)	385, 472
BstH2I	RGCGCY	1 cut(s)	45
BstHHI	GCGC	2 cut(s)	44, 606
BstKTI	GATC	3 cut(s)	173, 256, 417
BstMAI	GTCTC	1 cut(s)	65
BstMBI	GATC	3 cut(s)	170, 253, 414
BstMWI	GCNNNNNNNGC	7 cut(s)	82, 220, 332, 539, 548, 638, 647
BstNI	CCWGG	2 cut(s)	10, 419
BstSCI	CCNGG	2 cut(s)	8, 417
BstSFI	CTRYAG	5 cut(s)	107, 288, 297, 546, 635
BstV1I	GCAGC	7 cut(s)	106, 235, 310, 332, 461, 560, 616
BstX2I	RGATCY	1 cut(s)	414
BstYI	RGATCY	1 cut(s)	414
BsuRI	GGCC	1 cut(s)	140
BtgI	CCRYGG	1 cut(s)	375
BtrI	CACGTC	2 cut(s)	364, 587
BtsCI	GGATG	2 cut(s)	385, 472
BtsI	GCAGTG	1 cut(s)	606
BtsIMutI	CAGTG	2 cut(s)	561, 606
BveI	ACCTGC	1 cut(s)	550
Cac8I	GCNNGC	2 cut(s)	531, 639
CaiI	CAGNNNCTG	2 cut(s)	296, 452
CfoI	GCGC	2 cut(s)	44, 606
Cfr13I	GGNCC	2 cut(s)	138, 562
CseI	GACGC	1 cut(s)	82
Csp6I	GTAC	1 cut(s)	104
CviAII	CATG	3 cut(s)	328, 376, 406
CviQI	GTAC	1 cut(s)	104
DdeI	CTNAG	4 cut(s)	55, 399, 504, 642
DpnI	GATC	3 cut(s)	172, 255, 416
DpnII	GATC	3 cut(s)	170, 253, 414
Eam1104I	CTCTTC	3 cut(s)	185, 483, 597
EarI	CTCTTC	3 cut(s)	185, 483, 597
Eco130I	CCWWGG	2 cut(s)	141, 375
Eco47I	GGWCC	1 cut(s)	562
Eco47III	AGCGCT	1 cut(s)	43
Eco57I	CTGAAG	1 cut(s)	509
EcoO109I	RGGNCCY	1 cut(s)	562
EcoRI	GAATTC	1 cut(s)	146
EcoRII	CCWGG	2 cut(s)	8, 417
EcoT14I	CCWWGG	2 cut(s)	141, 375
ErhI	CCWWGG	2 cut(s)	141, 375
Esp3I	CGTCTC	1 cut(s)	65
FaeI	CATG	3 cut(s)	331, 379, 409
FaiI	YATR	6 cut(s)	207, 329, 356, 377, 407, 655
FalI	AAGNNNNNCTT	4 cut(s)	468, 500, 504, 536
FaqI	GGGAC	1 cut(s)	548
FatI	CATG	3 cut(s)	327, 375, 405
Fnu4HI	GCNGC	8 cut(s)	120, 123, 224, 321, 324, 450, 549, 630
FokI	GGATG	2 cut(s)	392, 479
Fsp4HI	GCNGC	8 cut(s)	120, 123, 224, 321, 324, 450, 549, 630
FspBI	CTAG	2 cut(s)	153, 269
GlaI	GCGC	2 cut(s)	43, 605
GluI	GCNGC	8 cut(s)	120, 123, 224, 321, 324, 450, 549, 630
GsaI	CCCAGC	1 cut(s)	569
GsuI	CTGGAG	2 cut(s)	336, 537
HaeII	RGCGCY	1 cut(s)	45
HaeIII	GGCC	1 cut(s)	140
HgaI	GACGC	1 cut(s)	82
HhaI	GCGC	2 cut(s)	44, 606
Hin1II	CATG	3 cut(s)	331, 379, 409
Hin6I	GCGC	2 cut(s)	42, 604
HinP1I	GCGC	2 cut(s)	42, 604
HincII	GTYRAC	1 cut(s)	432
HindII	GTYRAC	1 cut(s)	432
HinfI	GANTC	1 cut(s)	246
Hpy166II	GTNNAC	3 cut(s)	6, 367, 432
Hpy188I	TCNGA	2 cut(s)	48, 258
Hpy8I	GTNNAC	3 cut(s)	6, 367, 432
HpyAV	CCTTC	7 cut(s)	88, 94, 109, 266, 325, 491, 567
HpyCH4III	ACNGT	1 cut(s)	298
HpyCH4IV	ACGT	2 cut(s)	363, 586
HpyCH4V	TGCA	5 cut(s)	340, 533, 548, 559, 637
HpyF10VI	GCNNNNNNNGC	7 cut(s)	82, 220, 332, 539, 548, 638, 647
HpyF3I	CTNAG	4 cut(s)	55, 399, 504, 642
HpySE526I	ACGT	2 cut(s)	363, 586
Hsp92II	CATG	3 cut(s)	331, 379, 409
HspAI	GCGC	2 cut(s)	42, 604
Kzo9I	GATC	3 cut(s)	170, 253, 414
LguI	GCTCTTC	1 cut(s)	483
LmnI	GCTCC	3 cut(s)	317, 547, 556
Lsp1109I	GCAGC	7 cut(s)	106, 235, 310, 332, 461, 560, 616
LweI	GCATC	1 cut(s)	292
MaeI	CTAG	2 cut(s)	153, 269
MaeII	ACGT	2 cut(s)	363, 586
MalI	GATC	3 cut(s)	172, 255, 416
MboI	GATC	3 cut(s)	170, 253, 414
MfeI	CAATTG	1 cut(s)	438
MflI	RGATCY	1 cut(s)	414
MluCI	AATT	3 cut(s)	146, 438, 470
MmeI	TCCRAC	2 cut(s)	262, 489
MnlI	CCTC	4 cut(s)	129, 186, 457, 600
MroXI	GAANNNNTTC	1 cut(s)	519
MseI	TTAA	1 cut(s)	65
MspA1I	CMGCKG	2 cut(s)	323, 452
MspR9I	CCNGG	2 cut(s)	10, 419
MunI	CAATTG	1 cut(s)	438
MvaI	CCWGG	2 cut(s)	10, 419
MwoI	GCNNNNNNNGC	7 cut(s)	82, 220, 332, 539, 548, 638, 647
NcoI	CCATGG	1 cut(s)	375
NdeII	GATC	3 cut(s)	170, 253, 414
NlaIII	CATG	3 cut(s)	331, 379, 409
NlaIV	GGNNCC	1 cut(s)	564
PciSI	GCTCTTC	1 cut(s)	483
PdmI	GAANNNNTTC	1 cut(s)	519
PfeI	GAWTC	1 cut(s)	246
PfoI	TCCNGGA	1 cut(s)	417
PkrI	GCNGC	8 cut(s)	121, 124, 225, 322, 325, 451, 550, 631
PpuMI	RGGWCCY	1 cut(s)	562
Psp5II	RGGWCCY	1 cut(s)	562
Psp6I	CCWGG	2 cut(s)	8, 417
PspFI	CCCAGC	1 cut(s)	565
PspGI	CCWGG	2 cut(s)	8, 417
PspN4I	GGNNCC	1 cut(s)	564
PspPI	GGNCC	2 cut(s)	138, 562
PspPPI	RGGWCCY	1 cut(s)	562
PstI	CTGCAG	2 cut(s)	550, 639
PstNI	CAGNNNCTG	2 cut(s)	296, 452
PsuI	RGATCY	1 cut(s)	414
PvuII	CAGCTG	2 cut(s)	323, 452
RsaI	GTAC	1 cut(s)	105
RsaNI	GTAC	1 cut(s)	104
SapI	GCTCTTC	1 cut(s)	483
SaqAI	TTAA	1 cut(s)	65
SatI	GCNGC	8 cut(s)	120, 123, 224, 321, 324, 450, 549, 630
Sau3AI	GATC	3 cut(s)	170, 253, 414
Sau96I	GGNCC	2 cut(s)	138, 562
ScrFI	CCNGG	2 cut(s)	10, 419
SfaNI	GCATC	1 cut(s)	292
SfcI	CTRYAG	5 cut(s)	107, 288, 297, 546, 635
SinI	GGWCC	1 cut(s)	562
SmlI	CTYRAG	3 cut(s)	86, 307, 537
SmoI	CTYRAG	3 cut(s)	86, 307, 537
Sse9I	AATT	3 cut(s)	146, 438, 470
SsiI	CCGC	1 cut(s)	123
SspMI	CTAG	2 cut(s)	153, 269
StyD4I	CCNGG	2 cut(s)	8, 417
StyI	CCWWGG	2 cut(s)	141, 375
TaaI	ACNGT	1 cut(s)	298
TaiI	ACGT	2 cut(s)	366, 589
TasI	AATT	3 cut(s)	146, 438, 470
TauI	GCSGC	1 cut(s)	125
TfiI	GAWTC	1 cut(s)	246
Tru1I	TTAA	1 cut(s)	65
Tru9I	TTAA	1 cut(s)	65
TscAI	CASTG	2 cut(s)	561, 613
TseI	GCWGC	7 cut(s)	119, 223, 320, 323, 449, 548, 629
TspDTI	ATGAA	6 cut(s)	222, 344, 405, 422, 483, 636
TspGWI	ACGGA	1 cut(s)	47
TspRI	CASTG	2 cut(s)	561, 613
VpaK11BI	GGWCC	1 cut(s)	562
XapI	RAATTY	1 cut(s)	146
XmnI	GAANNNNTTC	1 cut(s)	519
XspI	CTAG	2 cut(s)	153, 269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.