FvH4_4g20950

Belongs to the SNF7 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000584
Physical Location & Seq
Forward (+)
24082513 .. 24083193
681 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g20950.t1

Sequence Viewer

Length: 681 bp
ATGTTCACCAGGCTACTTGGCAAACATAAAAAAGATGAATCCCACGGTGCCCTAACCCGCAAGTCCTTAAAAAAGCTAAACGAGCAACTTCAGATGCTGGAGCAACAAGAGAAAGTACTAGAGCGGAAGGCTGCTGCTGAACTAGAAAAGGCCAAGACTTTCAACAATGCAAAGAATAGAAAAGCTGCTCTCAGATGCTTGAAGATGAAGAAGAGGTACGAGGAACAAATAGAGATACAAGCAAACACCCAACTGCGGATCCATGATCAAATGATACTGCTAGAAGGTGCAAAAGCCACCACGGAAACTGTGGGTGCCTTGAGAACTGGGGCAGCTGCAATGAAGGCAATGCAGAAAGCAACGAAGATAGATGATGTGGACAAGGTCATGGATGAGAATAATGAGCAGACGGACAACATGAAGCAGATCCAGGAAGCTTTGGCGAATCCGATTGGTTACGATTTTGATGAGGATGAGTTGGAAGCGGAACTTGAAGAGCTTGAAGCCGCCGAGTTGGAAGATGATCTTCTTCAGCCTGTAACTACAAGTACATCTACTTCTGCAGCTCCAGTGCAGGTCCCGGCAGGAGTTAGGCAACCAAGTACTGCTCGTCGTGTTCCGGAGAAGCCTAGTGCTGAAGTAGATGAATTGGCTGCCTTGCAGGCTGAGATGGCACTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 ko04217 map04144 map04217
Pfam Domains
Protein Families
Snf7

Protein Analysis

227

Amino Acids

25.23

Weight (kDa)

5.17

Isoelectric Point (pI)

43.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Snf7 PF03357 23 - 194 1.9e-38 Snf7
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000584)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19830 AT2G19830 AT4G29160 AT4G29160 AT4G29160
fragaria_vesca FvH4_1g06720 FvH4_1g06720 FvH4_1g06720 FvH4_2g32330 FvH4_2g32330 FvH4_4g20950
malus_domestica MD02G1072100.v1.1 MD08G1074600.v1.1 MD15G1062300.v1.1 MD15G1201900.v1.1
prunus_persica Prupe.1G416300_v2.0.a1 Prupe.1G416300_v2.0.a1 Prupe.7G215600_v2.0.a1 Prupe.7G215600_v2.0.a1 Prupe.7G215600_v2.0.a1
pyrus_communis pycom02g05610 pycom08g06160 pycom15g05890 pycom15g05900 pycom15g17920
rosa_chinensis RchiOBHm_Chr2g0092461 RchiOBHm_Chr4g0426411 RchiOBHm_Chr4g0426421 RchiOBHm_Chr6g0310361 RchiOBHm_Chr7g0204861 RchiOBHm_Chr7g0204871 RchiOBHm_Chr7g0204891
rosa_laevigata RLG00000003423 RLG00000003426 RLG00000007295 RLG00000007296 RLG00000010489 RLG00000016312
rosa_multiflora Rmu_co8485477.1_g000001 Rmu_sc0001361.1_g000025 Rmu_sc0002180.1_g000006 Rmu_sc0002180.1_g000014 Rmu_sc0002180.1_g000015 Rmu_sc0002348.1_g000004 Rmu_sc0007942.1_g000001 Rmu_sc0042068.1_g000001
rosa_roxburghii Rroxscaffold_2G00149100 Rroxscaffold_3G00252690 Rroxscaffold_7G00158620
rosa_rugosa Rorug02G0026500 Rorug04G0210700 Rorug04G0211100 Rorug06G0379300 Rorug07G0086400
rosa_samantha Rh2AG072400 Rh2BG072800 Rh2CG074000 Rh2DG070800 Rh4AG267800 Rh4BG273900 Rh4BG274000 Rh4CG288100 Rh4DG270700 Rh4DG270800 Rh6AG493500 Rh6BG503200 Rh6CG508200 Rh6DG494300 Rh7AG216800 Rh7AG216900 Rh7BG213900 Rh7CG230300 Rh7DG224400 Rh7DG224500 Rh7DG224700
rosa_wichuraiana Rw2G006030 Rw4G023220 Rw6G042940 Rw7G018790 Rw7G018800 Rw7G018820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 565
AccB1I GGYRCC 2 cut(s) 47, 314
AccBSI CCGCTC 1 cut(s) 124
AccIII TCCGGA 1 cut(s) 619
AciI CCGC 5 cut(s) 58, 124, 256, 485, 507
AclWI GGATC 3 cut(s) 253, 266, 421
AcuI CTGAAG 3 cut(s) 74, 515, 657
AfaI GTAC 4 cut(s) 117, 218, 550, 604
AfiI CCNNNNNNNGG 1 cut(s) 255
AgsI TTSAA 4 cut(s) 163, 202, 494, 503
AjnI CCWGG 2 cut(s) 8, 429
AluBI AGCT 6 cut(s) 76, 185, 335, 437, 499, 566
AluI AGCT 6 cut(s) 76, 185, 335, 437, 499, 566
AlwI GGATC 3 cut(s) 253, 266, 421
AlwNI CAGNNNCTG 1 cut(s) 97
Aor13HI TCCGGA 1 cut(s) 619
AoxI GGCC 1 cut(s) 150
ApeKI GCWGC 7 cut(s) 131, 134, 185, 332, 335, 563, 653
AspS9I GGNCC 1 cut(s) 577
AsuC2I CCSGG 1 cut(s) 581
AvaII GGWCC 1 cut(s) 577
BaeGI GKGCMC 1 cut(s) 52
BamHI GGATCC 1 cut(s) 258
BanI GGYRCC 2 cut(s) 47, 314
BarI GAAGNNNNNNTAC 4 cut(s) 200, 232, 541, 573
BbvI GCAGC 7 cut(s) 118, 121, 172, 322, 344, 575, 640
BccI CCATC 1 cut(s) 664
BciT130I CCWGG 2 cut(s) 10, 431
BclI TGATCA 1 cut(s) 265
BcnI CCSGG 1 cut(s) 581
BfaI CTAG 4 cut(s) 119, 143, 281, 630
BfmI CTRYAG 1 cut(s) 561
BfuAI ACCTGC 1 cut(s) 565
BglI GCCNNNNNGGC 1 cut(s) 662
BisI GCNGC 8 cut(s) 132, 135, 186, 333, 336, 507, 564, 654
BlsI GCNGC 8 cut(s) 133, 136, 187, 334, 337, 508, 565, 655
BmcAI AGTACT 2 cut(s) 117, 604
Bme1390I CCNGG 3 cut(s) 10, 431, 581
Bme18I GGWCC 1 cut(s) 577
BmgT120I GGNCC 1 cut(s) 577
BmiI GGNNCC 4 cut(s) 49, 260, 316, 579
BmrFI CCNGG 3 cut(s) 10, 431, 581
BmrI ACTGGG 1 cut(s) 336
BmsI GCATC 2 cut(s) 84, 185
BmuI ACTGGG 1 cut(s) 336
BpmI CTGGAG 2 cut(s) 119, 552
BpuEI CTTGAG 1 cut(s) 340
BpuMI CCSGG 1 cut(s) 581
BsaJI CCNNGG 2 cut(s) 43, 300
BsaWI WCCGGW 1 cut(s) 619
Bsc4I CCNNNNNNNGG 1 cut(s) 255
Bse1I ACTGG 2 cut(s) 331, 569
Bse3DI GCAATG 2 cut(s) 345, 354
BseAI TCCGGA 1 cut(s) 619
BseBI CCWGG 2 cut(s) 10, 431
BseDI CCNNGG 2 cut(s) 43, 300
BseGI GGATG 2 cut(s) 397, 478
BseLI CCNNNNNNNGG 1 cut(s) 255
BseMI GCAATG 2 cut(s) 345, 354
BseMII CTCAG 2 cut(s) 205, 657
BseNI ACTGG 2 cut(s) 331, 569
BseSI GKGCMC 1 cut(s) 52
BseXI GCAGC 7 cut(s) 118, 121, 172, 322, 344, 575, 640
BsgI GTGCAG 1 cut(s) 593
BshFI GGCC 1 cut(s) 152
BshNI GGYRCC 2 cut(s) 47, 314
BsiSI CCGG 2 cut(s) 581, 620
BslFI GGGAC 1 cut(s) 563
BslI CCNNNNNNNGG 1 cut(s) 255
BsmFI GGGAC 1 cut(s) 563
BsnI GGCC 1 cut(s) 152
Bsp1286I GDGCHC 1 cut(s) 52
Bsp13I TCCGGA 1 cut(s) 619
Bsp143I GATC 4 cut(s) 258, 265, 426, 523
BspACI CCGC 5 cut(s) 58, 124, 256, 485, 507
BspANI GGCC 1 cut(s) 152
BspCNI CTCAG 2 cut(s) 204, 658
BspEI TCCGGA 1 cut(s) 619
BspLI GGNNCC 4 cut(s) 49, 260, 316, 579
BspMAI CTGCAG 1 cut(s) 565
BspMI ACCTGC 1 cut(s) 565
BspPI GGATC 3 cut(s) 253, 266, 421
BspQI GCTCTTC 1 cut(s) 489
BspT107I GGYRCC 2 cut(s) 47, 314
BsrBI CCGCTC 1 cut(s) 124
BsrDI GCAATG 2 cut(s) 345, 354
BsrI ACTGG 2 cut(s) 331, 569
BssECI CCNNGG 2 cut(s) 43, 300
BssMI GATC 4 cut(s) 258, 265, 426, 523
Bst2UI CCWGG 2 cut(s) 10, 431
Bst4CI ACNGT 2 cut(s) 47, 310
Bst6I CTCTTC 2 cut(s) 206, 489
BstC8I GCNNGC 1 cut(s) 663
BstDEI CTNAG 2 cut(s) 191, 666
BstDSI CCRYGG 2 cut(s) 43, 300
BstF5I GGATG 2 cut(s) 397, 478
BstKTI GATC 4 cut(s) 261, 268, 429, 526
BstMBI GATC 4 cut(s) 258, 265, 426, 523
BstMWI GCNNNNNNNGC 4 cut(s) 82, 344, 662, 671
BstNI CCWGG 2 cut(s) 10, 431
BstSCI CCNGG 3 cut(s) 8, 429, 579
BstSFI CTRYAG 1 cut(s) 561
BstSLI GKGCMC 1 cut(s) 52
BstV1I GCAGC 7 cut(s) 118, 121, 172, 322, 344, 575, 640
BstX2I RGATCY 2 cut(s) 258, 426
BstYI RGATCY 2 cut(s) 258, 426
BsuRI GGCC 1 cut(s) 152
BtgI CCRYGG 2 cut(s) 43, 300
BtsCI GGATG 2 cut(s) 397, 478
BtsIMutI CAGTG 1 cut(s) 576
BveI ACCTGC 1 cut(s) 565
Cac8I GCNNGC 1 cut(s) 663
CaiI CAGNNNCTG 1 cut(s) 97
Cfr13I GGNCC 1 cut(s) 577
Csp6I GTAC 4 cut(s) 116, 217, 549, 603
CviAII CATG 3 cut(s) 263, 388, 418
CviQI GTAC 4 cut(s) 116, 217, 549, 603
DdeI CTNAG 2 cut(s) 191, 666
DpnI GATC 4 cut(s) 260, 267, 428, 525
DpnII GATC 4 cut(s) 258, 265, 426, 523
Eam1104I CTCTTC 2 cut(s) 206, 489
EarI CTCTTC 2 cut(s) 206, 489
Eco47I GGWCC 1 cut(s) 577
Eco57I CTGAAG 3 cut(s) 74, 515, 657
EcoO109I RGGNCCY 1 cut(s) 577
EcoRII CCWGG 2 cut(s) 8, 429
FaeI CATG 3 cut(s) 266, 391, 421
FaiI YATR 5 cut(s) 27, 264, 389, 419, 679
FalI AAGNNNNNCTT 4 cut(s) 474, 506, 510, 542
FaqI GGGAC 1 cut(s) 563
FatI CATG 3 cut(s) 262, 387, 417
FauI CCCGC 1 cut(s) 65
FbaI TGATCA 1 cut(s) 265
Fnu4HI GCNGC 8 cut(s) 132, 135, 186, 333, 336, 507, 564, 654
FokI GGATG 2 cut(s) 404, 485
Fsp4HI GCNGC 8 cut(s) 132, 135, 186, 333, 336, 507, 564, 654
FspBI CTAG 4 cut(s) 119, 143, 281, 630
GluI GCNGC 8 cut(s) 132, 135, 186, 333, 336, 507, 564, 654
GsuI CTGGAG 2 cut(s) 119, 552
HaeIII GGCC 1 cut(s) 152
HapII CCGG 2 cut(s) 581, 620
Hin1II CATG 3 cut(s) 266, 391, 421
HindIII AAGCTT 1 cut(s) 435
HinfI GANTC 2 cut(s) 38, 445
HpaII CCGG 2 cut(s) 581, 620
Hpy166II GTNNAC 2 cut(s) 6, 379
Hpy188I TCNGA 3 cut(s) 93, 194, 450
Hpy188III TCNNGA 1 cut(s) 620
Hpy8I GTNNAC 2 cut(s) 6, 379
Hpy99I CGWCG 1 cut(s) 615
HpyAV CCTTC 3 cut(s) 121, 278, 337
HpyCH4III ACNGT 2 cut(s) 47, 310
HpyCH4V TGCA 7 cut(s) 170, 290, 338, 352, 563, 574, 661
HpyF10VI GCNNNNNNNGC 4 cut(s) 82, 344, 662, 671
HpyF3I CTNAG 2 cut(s) 191, 666
Hsp92II CATG 3 cut(s) 266, 391, 421
Kpn2I TCCGGA 1 cut(s) 619
Ksp22I TGATCA 1 cut(s) 265
Kzo9I GATC 4 cut(s) 258, 265, 426, 523
LguI GCTCTTC 1 cut(s) 489
LmnI GCTCC 2 cut(s) 100, 571
Lsp1109I GCAGC 7 cut(s) 118, 121, 172, 322, 344, 575, 640
LweI GCATC 2 cut(s) 84, 185
MaeI CTAG 4 cut(s) 119, 143, 281, 630
MaeIII GTNAC 2 cut(s) 455, 538
MalI GATC 4 cut(s) 260, 267, 428, 525
MbiI CCGCTC 1 cut(s) 124
MboI GATC 4 cut(s) 258, 265, 426, 523
MboII GAAGA 8 cut(s) 214, 220, 223, 376, 506, 518, 521, 530
MflI RGATCY 2 cut(s) 258, 426
MhlI GDGCHC 1 cut(s) 52
MluCI AATT 1 cut(s) 647
MmeI TCCRAC 2 cut(s) 459, 495
MnlI CCTC 3 cut(s) 207, 214, 463
MroI TCCGGA 1 cut(s) 619
MseI TTAA 1 cut(s) 68
MspA1I CMGCKG 1 cut(s) 335
MspI CCGG 2 cut(s) 581, 620
MspR9I CCNGG 3 cut(s) 10, 431, 581
MvaI CCWGG 2 cut(s) 10, 431
MwoI GCNNNNNNNGC 4 cut(s) 82, 344, 662, 671
NciI CCSGG 1 cut(s) 581
NdeII GATC 4 cut(s) 258, 265, 426, 523
NlaIII CATG 3 cut(s) 266, 391, 421
NlaIV GGNNCC 4 cut(s) 49, 260, 316, 579
NmeAIII GCCGAG 1 cut(s) 535
PciSI GCTCTTC 1 cut(s) 489
PfeI GAWTC 2 cut(s) 38, 445
PflFI GACNNNGTC 1 cut(s) 383
PfoI TCCNGGA 1 cut(s) 429
PkrI GCNGC 8 cut(s) 133, 136, 187, 334, 337, 508, 565, 655
PpuMI RGGWCCY 1 cut(s) 577
Psp5II RGGWCCY 1 cut(s) 577
Psp6I CCWGG 2 cut(s) 8, 429
PspGI CCWGG 2 cut(s) 8, 429
PspN4I GGNNCC 4 cut(s) 49, 260, 316, 579
PspPI GGNCC 1 cut(s) 577
PspPPI RGGWCCY 1 cut(s) 577
PstI CTGCAG 1 cut(s) 565
PstNI CAGNNNCTG 1 cut(s) 97
PsuI RGATCY 2 cut(s) 258, 426
PsyI GACNNNGTC 1 cut(s) 383
PvuII CAGCTG 1 cut(s) 335
RsaI GTAC 4 cut(s) 117, 218, 550, 604
RsaNI GTAC 4 cut(s) 116, 217, 549, 603
SapI GCTCTTC 1 cut(s) 489
SaqAI TTAA 1 cut(s) 68
SatI GCNGC 8 cut(s) 132, 135, 186, 333, 336, 507, 564, 654
Sau3AI GATC 4 cut(s) 258, 265, 426, 523
Sau96I GGNCC 1 cut(s) 577
ScaI AGTACT 2 cut(s) 117, 604
ScrFI CCNGG 3 cut(s) 10, 431, 581
SduI GDGCHC 1 cut(s) 52
SfaNI GCATC 2 cut(s) 84, 185
SfcI CTRYAG 1 cut(s) 561
SinI GGWCC 1 cut(s) 577
SmlI CTYRAG 1 cut(s) 319
SmoI CTYRAG 1 cut(s) 319
Sse9I AATT 1 cut(s) 647
SsiI CCGC 5 cut(s) 58, 124, 256, 485, 507
SspMI CTAG 4 cut(s) 119, 143, 281, 630
StyD4I CCNGG 3 cut(s) 8, 429, 579
TaaI ACNGT 2 cut(s) 47, 310
TasI AATT 1 cut(s) 647
TatI WGTACW 3 cut(s) 115, 548, 602
TauI GCSGC 1 cut(s) 509
TfiI GAWTC 2 cut(s) 38, 445
Tru1I TTAA 1 cut(s) 68
Tru9I TTAA 1 cut(s) 68
TscAI CASTG 1 cut(s) 576
TseI GCWGC 7 cut(s) 131, 134, 185, 332, 335, 563, 653
TspDTI ATGAA 5 cut(s) 51, 221, 356, 434, 660
TspGWI ACGGA 2 cut(s) 317, 425
TspRI CASTG 1 cut(s) 576
Tth111I GACNNNGTC 1 cut(s) 383
VpaK11BI GGWCC 1 cut(s) 577
XcmI CCANNNNNNNNNTGG 1 cut(s) 307
XspI CTAG 4 cut(s) 119, 143, 281, 630
ZrmI AGTACT 2 cut(s) 117, 604
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.