Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000584

Physical Location & Seq

Genomic Coordinates Forward (+)

48286902 .. 48288137

Gene Structure 1236 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003426

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGTCCTTAAATGACAATGGAAGGTTAAGTGAGAATCTTGAAATGCTCGAGACAATGGAGAAAGTACTCCAAAAGAAGGCTACTGCTGAACTTGAAAGAGCCACGCAATTCAGCAAATCAAAGAATAAAAGAGCGGCTATGCAATCTCTGAAGAAGAAGAGGTTGTATGATAAGCAAATAGAGAAAAATGGAAACTCCCAATTGCGGGTCCATGATCTGATGATAATGCTAGAAGGTGCAAAAGCCAACATCGAAACTGTAGATGCCTTGAGAACTGGAGCAGCTGCACTGAAGGGAATGCAAAAAGCAGCGAATATAGATGAAGTGGAAAAGACCTTGGACGAGGTTCATGAGCAGACAGAGAAGATGAAACAAATACAGGAAGCTTTGTCAACTCCAATTGGATTTGATGATTTTGATGAGGATGAATTGGAAGCAGAACTTGAAGAGCTGGAAAGTGCCGAGTTGGAGAAACAACTTCTTCAGCCTGCAGCAACTTCTTCAGCTCCAGCGCACCTCCCAGCAAGAAAGCAACCAAATCGTCCTGTTCTCCAGAAGCCCACTGTTGATGAAGAAGATGAACTAGTTGCTTTGCAGGCTGAGATGGCACTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000815 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0006810 GO:0006900 GO:0006996 GO:0007032 GO:0008150 GO:0009987 GO:0010008 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0036452 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0061024 GO:0070676 GO:0071840 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

205

Amino Acids

22.87

Weight (kDa)

4.88

Isoelectric Point (pI)

55.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Snf7	PF03357	7 - 171	3.3e-37	Snf7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000584)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19830 AT2G19830 AT4G29160 AT4G29160 AT4G29160
fragaria_vesca	FvH4_1g06720 FvH4_1g06720 FvH4_1g06720 FvH4_2g32330 FvH4_2g32330 FvH4_4g20950
malus_domestica	MD02G1072100.v1.1 MD08G1074600.v1.1 MD15G1062300.v1.1 MD15G1201900.v1.1
prunus_persica	Prupe.1G416300_v2.0.a1 Prupe.1G416300_v2.0.a1 Prupe.7G215600_v2.0.a1 Prupe.7G215600_v2.0.a1 Prupe.7G215600_v2.0.a1
pyrus_communis	pycom02g05610 pycom08g06160 pycom15g05890 pycom15g05900 pycom15g17920
rosa_chinensis	RchiOBHm_Chr2g0092461 RchiOBHm_Chr4g0426411 RchiOBHm_Chr4g0426421 RchiOBHm_Chr6g0310361 RchiOBHm_Chr7g0204861 RchiOBHm_Chr7g0204871 RchiOBHm_Chr7g0204891
rosa_laevigata	RLG00000003423 RLG00000003426 RLG00000007295 RLG00000007296 RLG00000010489 RLG00000016312
rosa_multiflora	Rmu_co8485477.1_g000001 Rmu_sc0001361.1_g000025 Rmu_sc0002180.1_g000006 Rmu_sc0002180.1_g000014 Rmu_sc0002180.1_g000015 Rmu_sc0002348.1_g000004 Rmu_sc0007942.1_g000001 Rmu_sc0042068.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149100 Rroxscaffold_3G00252690 Rroxscaffold_7G00158620
rosa_rugosa	Rorug02G0026500 Rorug04G0210700 Rorug04G0211100 Rorug06G0379300 Rorug07G0086400
rosa_samantha	Rh2AG072400 Rh2BG072800 Rh2CG074000 Rh2DG070800 Rh4AG267800 Rh4BG273900 Rh4BG274000 Rh4CG288100 Rh4DG270700 Rh4DG270800 Rh6AG493500 Rh6BG503200 Rh6CG508200 Rh6DG494300 Rh7AG216800 Rh7AG216900 Rh7BG213900 Rh7CG230300 Rh7DG224400 Rh7DG224500 Rh7DG224700
rosa_wichuraiana	Rw2G006030 Rw4G023220 Rw6G042940 Rw7G018790 Rw7G018800 Rw7G018820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	134
AciI	CCGC	2 cut(s)	134, 205
AcuI	CTGAAG	4 cut(s)	170, 311, 467, 486
AfaI	GTAC	1 cut(s)	66
AfiI	CCNNNNNNNGG	3 cut(s)	76, 204, 205
AgsI	TTSAA	3 cut(s)	41, 95, 446
AhlI	ACTAGT	1 cut(s)	583
AluBI	AGCT	4 cut(s)	284, 386, 451, 506
AluI	AGCT	4 cut(s)	284, 386, 451, 506
Alw26I	GTCTC	1 cut(s)	44
Ama87I	CYCGRG	1 cut(s)	47
ApeKI	GCWGC	4 cut(s)	281, 284, 308, 491
AspLEI	GCGC	1 cut(s)	514
AspS9I	GGNCC	1 cut(s)	208
AvaI	CYCGRG	1 cut(s)	47
AvaII	GGWCC	1 cut(s)	208
BbvI	GCAGC	4 cut(s)	271, 293, 320, 503
BccI	CCATC	1 cut(s)	598
BcgI	CGANNNNNNTGC	2 cut(s)	521, 555
BcoDI	GTCTC	1 cut(s)	44
BcuI	ACTAGT	1 cut(s)	583
BfaI	CTAG	2 cut(s)	230, 584
BfmI	CTRYAG	2 cut(s)	258, 489
BisI	GCNGC	5 cut(s)	135, 282, 285, 309, 492
BlsI	GCNGC	5 cut(s)	136, 283, 286, 310, 493
BmcAI	AGTACT	1 cut(s)	66
Bme18I	GGWCC	1 cut(s)	208
BmeT110I	CYCGRG	1 cut(s)	47
BmgT120I	GGNCC	1 cut(s)	208
BmiI	GGNNCC	1 cut(s)	209
BmsI	GCATC	1 cut(s)	253
BpmI	CTGGAG	3 cut(s)	297, 492, 536
BpuEI	CTTGAG	1 cut(s)	289
BsaJI	CCNNGG	1 cut(s)	336
Bsc4I	CCNNNNNNNGG	3 cut(s)	76, 204, 205
Bse1I	ACTGG	1 cut(s)	280
BseDI	CCNNGG	1 cut(s)	336
BseGI	GGATG	1 cut(s)	430
BseLI	CCNNNNNNNGG	3 cut(s)	76, 204, 205
BseMII	CTCAG	1 cut(s)	591
BseNI	ACTGG	1 cut(s)	280
BseXI	GCAGC	4 cut(s)	271, 293, 320, 503
BseYI	CCCAGC	1 cut(s)	520
BsgI	GTGCAG	1 cut(s)	270
BsiHKCI	CYCGRG	1 cut(s)	47
BslI	CCNNNNNNNGG	3 cut(s)	76, 204, 205
BsmAI	GTCTC	1 cut(s)	44
BsmI	GAATGC	1 cut(s)	303
BsoBI	CYCGRG	1 cut(s)	47
Bsp143I	GATC	1 cut(s)	214
BspACI	CCGC	2 cut(s)	134, 205
BspCNI	CTCAG	1 cut(s)	592
BspHI	TCATGA	1 cut(s)	349
BspLI	GGNNCC	1 cut(s)	209
BspMAI	CTGCAG	1 cut(s)	493
BspQI	GCTCTTC	1 cut(s)	441
BsrBI	CCGCTC	1 cut(s)	134
BsrI	ACTGG	1 cut(s)	280
BssECI	CCNNGG	1 cut(s)	336
BssMI	GATC	1 cut(s)	214
BssT1I	CCWWGG	1 cut(s)	336
Bst4CI	ACNGT	2 cut(s)	259, 565
Bst6I	CTCTTC	2 cut(s)	152, 441
BstC8I	GCNNGC	2 cut(s)	489, 597
BstDEI	CTNAG	1 cut(s)	600
BstF5I	GGATG	1 cut(s)	430
BstHHI	GCGC	1 cut(s)	514
BstKTI	GATC	1 cut(s)	217
BstMAI	GTCTC	1 cut(s)	44
BstMBI	GATC	1 cut(s)	214
BstMWI	GCNNNNNNNGC	2 cut(s)	596, 605
BstSFI	CTRYAG	2 cut(s)	258, 489
BstV1I	GCAGC	4 cut(s)	271, 293, 320, 503
BtsCI	GGATG	1 cut(s)	430
BtsIMutI	CAGTG	2 cut(s)	287, 561
Cac8I	GCNNGC	2 cut(s)	489, 597
CciI	TCATGA	1 cut(s)	349
CfoI	GCGC	1 cut(s)	514
Cfr13I	GGNCC	1 cut(s)	208
Csp6I	GTAC	1 cut(s)	65
CviAII	CATG	2 cut(s)	212, 350
CviQI	GTAC	1 cut(s)	65
DdeI	CTNAG	1 cut(s)	600
DpnI	GATC	1 cut(s)	216
DpnII	GATC	1 cut(s)	214
Eam1104I	CTCTTC	2 cut(s)	152, 441
EarI	CTCTTC	2 cut(s)	152, 441
Eco130I	CCWWGG	1 cut(s)	336
Eco47I	GGWCC	1 cut(s)	208
Eco57I	CTGAAG	4 cut(s)	170, 311, 467, 486
Eco88I	CYCGRG	1 cut(s)	47
EcoT14I	CCWWGG	1 cut(s)	336
ErhI	CCWWGG	1 cut(s)	336
FaeI	CATG	2 cut(s)	215, 353
FaiI	YATR	6 cut(s)	140, 168, 213, 317, 351, 613
FalI	AAGNNNNNCTT	2 cut(s)	426, 458
FatI	CATG	2 cut(s)	211, 349
FauI	CCCGC	1 cut(s)	198
Fnu4HI	GCNGC	5 cut(s)	135, 282, 285, 309, 492
FokI	GGATG	1 cut(s)	437
Fsp4HI	GCNGC	5 cut(s)	135, 282, 285, 309, 492
FspBI	CTAG	2 cut(s)	230, 584
GlaI	GCGC	1 cut(s)	513
GluI	GCNGC	5 cut(s)	135, 282, 285, 309, 492
GsaI	CCCAGC	1 cut(s)	524
GsuI	CTGGAG	3 cut(s)	297, 492, 536
HhaI	GCGC	1 cut(s)	514
Hin1II	CATG	2 cut(s)	215, 353
Hin6I	GCGC	1 cut(s)	512
HinP1I	GCGC	1 cut(s)	512
HincII	GTYRAC	1 cut(s)	393
HindII	GTYRAC	1 cut(s)	393
HindIII	AAGCTT	1 cut(s)	384
HinfI	GANTC	1 cut(s)	34
Hpy166II	GTNNAC	1 cut(s)	393
Hpy188I	TCNGA	2 cut(s)	150, 219
Hpy188III	TCNNGA	4 cut(s)	38, 49, 350, 553
Hpy8I	GTNNAC	1 cut(s)	393
HpyAV	CCTTC	4 cut(s)	15, 70, 227, 286
HpyCH4III	ACNGT	2 cut(s)	259, 565
HpyCH4V	TGCA	6 cut(s)	142, 239, 287, 301, 491, 595
HpyF10VI	GCNNNNNNNGC	2 cut(s)	596, 605
HpyF3I	CTNAG	1 cut(s)	600
Hsp92II	CATG	2 cut(s)	215, 353
HspAI	GCGC	1 cut(s)	512
Kzo9I	GATC	1 cut(s)	214
LguI	GCTCTTC	1 cut(s)	441
LmnI	GCTCC	2 cut(s)	278, 511
LpnPI	CCDG	9 cut(s)	261, 365, 437, 501, 522, 534, 558, 566, 581
Lsp1109I	GCAGC	4 cut(s)	271, 293, 320, 503
LweI	GCATC	1 cut(s)	253
MaeI	CTAG	2 cut(s)	230, 584
MalI	GATC	1 cut(s)	216
MbiI	CCGCTC	1 cut(s)	134
MboI	GATC	1 cut(s)	214
MboII	GAAGA	9 cut(s)	163, 166, 169, 376, 458, 473, 492, 584, 587
MfeI	CAATTG	2 cut(s)	200, 399
MluCI	AATT	4 cut(s)	107, 200, 399, 428
MmeI	TCCRAC	1 cut(s)	447
MnlI	CCTC	4 cut(s)	153, 337, 415, 527
MseI	TTAA	2 cut(s)	8, 26
MspA1I	CMGCKG	1 cut(s)	284
MunI	CAATTG	2 cut(s)	200, 399
Mva1269I	GAATGC	1 cut(s)	303
MwoI	GCNNNNNNNGC	2 cut(s)	596, 605
NdeII	GATC	1 cut(s)	214
NlaIII	CATG	2 cut(s)	215, 353
NlaIV	GGNNCC	1 cut(s)	209
NmeAIII	GCCGAG	1 cut(s)	487
PaeR7I	CTCGAG	1 cut(s)	47
PagI	TCATGA	1 cut(s)	349
PciSI	GCTCTTC	1 cut(s)	441
PctI	GAATGC	1 cut(s)	303
PfeI	GAWTC	1 cut(s)	34
PkrI	GCNGC	5 cut(s)	136, 283, 286, 310, 493
PspFI	CCCAGC	1 cut(s)	520
PspN4I	GGNNCC	1 cut(s)	209
PspPI	GGNCC	1 cut(s)	208
PstI	CTGCAG	1 cut(s)	493
PvuII	CAGCTG	1 cut(s)	284
RsaI	GTAC	1 cut(s)	66
RsaNI	GTAC	1 cut(s)	65
SapI	GCTCTTC	1 cut(s)	441
SaqAI	TTAA	2 cut(s)	8, 26
SatI	GCNGC	5 cut(s)	135, 282, 285, 309, 492
Sau3AI	GATC	1 cut(s)	214
Sau96I	GGNCC	1 cut(s)	208
ScaI	AGTACT	1 cut(s)	66
SfaNI	GCATC	1 cut(s)	253
SfcI	CTRYAG	2 cut(s)	258, 489
Sfr274I	CTCGAG	1 cut(s)	47
SinI	GGWCC	1 cut(s)	208
SlaI	CTCGAG	1 cut(s)	47
SmlI	CTYRAG	2 cut(s)	47, 268
SmoI	CTYRAG	2 cut(s)	47, 268
SpeI	ACTAGT	1 cut(s)	583
Sse9I	AATT	4 cut(s)	107, 200, 399, 428
SsiI	CCGC	2 cut(s)	134, 205
SspMI	CTAG	2 cut(s)	230, 584
StyI	CCWWGG	1 cut(s)	336
TaaI	ACNGT	2 cut(s)	259, 565
TaqI	TCGA	2 cut(s)	48, 252
TasI	AATT	4 cut(s)	107, 200, 399, 428
TatI	WGTACW	1 cut(s)	64
TauI	GCSGC	1 cut(s)	137
TfiI	GAWTC	1 cut(s)	34
Tru1I	TTAA	2 cut(s)	8, 26
Tru9I	TTAA	2 cut(s)	8, 26
TscAI	CASTG	2 cut(s)	294, 568
TseI	GCWGC	4 cut(s)	281, 284, 308, 491
TspDTI	ATGAA	6 cut(s)	336, 338, 383, 441, 585, 594
TspRI	CASTG	2 cut(s)	294, 568
VpaK11BI	GGWCC	1 cut(s)	208
XhoI	CTCGAG	1 cut(s)	47
XspI	CTAG	2 cut(s)	230, 584
ZrmI	AGTACT	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.