Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0000584

Physical Location & Seq

Genomic Coordinates Reverse (-)

12738228 .. 12740467

Gene Structure 2240 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g17920.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGTCAACCATGTTCACCAGGATTTTTGGGAAACCTAAACAGGAAAACAGTGCCCTAACCACCTTAGACAAGTTGAATGAGACGCTAGAAATGCTTGAGAAAAAGGAGAAAGTACTACAGAAGAAGGCCGCTGCAGAAGTTGATAGGGCCAAGGATTTCACCAAAGCAAAGAACAAAAGGGCGGCTATACAATGTTTGAAGAGGAAGAGGTTATATGAGCAGCAAATAGAGCAGCTTGGAAATTTCCAGCTGCGTATCCATGATCAGATGATAATGCTAGAAGGTGCAAAAGCCACAACCGAAACTGTAGATGCCTTGAGAACTGGAGCTGCTACAATGAAGGCAATGCAAAAAGCAACGAACATAGATGATGTGGACAAGACTATGGATGAGATTAATGAGCAGACGGAGAACATGAAACAGATACAGGAAGCATTGTCAACTCCAATTGGTTCAGCCGCTGATTTTGATGAGGATGAATTGGAAGCAGAACTTGAGGAGCTGGAAGGTGCCGAATTGGAAGAACAACTTCTTCAGCCAGCAACACAAGCTCCTGCAGCTCCAGTGCAGGTCCCAGCTGGAAGGCAACCAACTCGTCCTCCTCCCCAAAGGCGCACTGAAGAAGAAGATGAATTGGCTGCTTTGCAGGCTGAGATGGCGCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000815 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0006810 GO:0006900 GO:0006996 GO:0007032 GO:0008150 GO:0009987 GO:0010008 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0036452 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0061024 GO:0070676 GO:0071840 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

222

Amino Acids

24.8

Weight (kDa)

4.79

Isoelectric Point (pI)

53.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000584)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19830 AT2G19830 AT4G29160 AT4G29160 AT4G29160
fragaria_vesca	FvH4_1g06720 FvH4_1g06720 FvH4_1g06720 FvH4_2g32330 FvH4_2g32330 FvH4_4g20950
malus_domestica	MD02G1072100.v1.1 MD08G1074600.v1.1 MD15G1062300.v1.1 MD15G1201900.v1.1
prunus_persica	Prupe.1G416300_v2.0.a1 Prupe.1G416300_v2.0.a1 Prupe.7G215600_v2.0.a1 Prupe.7G215600_v2.0.a1 Prupe.7G215600_v2.0.a1
pyrus_communis	pycom02g05610 pycom08g06160 pycom15g05890 pycom15g05900 pycom15g17920
rosa_chinensis	RchiOBHm_Chr2g0092461 RchiOBHm_Chr4g0426411 RchiOBHm_Chr4g0426421 RchiOBHm_Chr6g0310361 RchiOBHm_Chr7g0204861 RchiOBHm_Chr7g0204871 RchiOBHm_Chr7g0204891
rosa_laevigata	RLG00000003423 RLG00000003426 RLG00000007295 RLG00000007296 RLG00000010489 RLG00000016312
rosa_multiflora	Rmu_co8485477.1_g000001 Rmu_sc0001361.1_g000025 Rmu_sc0002180.1_g000006 Rmu_sc0002180.1_g000014 Rmu_sc0002180.1_g000015 Rmu_sc0002348.1_g000004 Rmu_sc0007942.1_g000001 Rmu_sc0042068.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149100 Rroxscaffold_3G00252690 Rroxscaffold_7G00158620
rosa_rugosa	Rorug02G0026500 Rorug04G0210700 Rorug04G0211100 Rorug06G0379300 Rorug07G0086400
rosa_samantha	Rh2AG072400 Rh2BG072800 Rh2CG074000 Rh2DG070800 Rh4AG267800 Rh4BG273900 Rh4BG274000 Rh4CG288100 Rh4DG270700 Rh4DG270800 Rh6AG493500 Rh6BG503200 Rh6CG508200 Rh6DG494300 Rh7AG216800 Rh7AG216900 Rh7BG213900 Rh7CG230300 Rh7DG224400 Rh7DG224500 Rh7DG224700
rosa_wichuraiana	Rw2G006030 Rw4G023220 Rw6G042940 Rw7G018790 Rw7G018800 Rw7G018820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	559
AccB1I	GGYRCC	1 cut(s)	509
AciI	CCGC	3 cut(s)	129, 182, 459
AcsI	RAATTY	1 cut(s)	241
AcuI	CTGAAG	2 cut(s)	518, 639
AfaI	GTAC	1 cut(s)	114
AgsI	TTSAA	2 cut(s)	76, 199
AjnI	CCWGG	1 cut(s)	17
AluBI	AGCT	7 cut(s)	235, 250, 329, 502, 551, 560, 578
AluI	AGCT	7 cut(s)	235, 250, 329, 502, 551, 560, 578
Alw26I	GTCTC	1 cut(s)	74
AlwNI	CAGNNNCTG	1 cut(s)	461
AoxI	GGCC	2 cut(s)	126, 147
ApeKI	GCWGC	7 cut(s)	131, 220, 232, 250, 329, 557, 638
ApoI	RAATTY	1 cut(s)	241
AseI	ATTAAT	1 cut(s)	396
Asp700I	GAANNNNTTC	1 cut(s)	528
AspLEI	GCGC	2 cut(s)	615, 661
AspS9I	GGNCC	2 cut(s)	147, 571
AsuHPI	GGTGA	2 cut(s)	7, 151
AvaII	GGWCC	1 cut(s)	571
BaeGI	GKGCMC	1 cut(s)	55
BanI	GGYRCC	1 cut(s)	509
BbvI	GCAGC	7 cut(s)	118, 232, 237, 244, 316, 569, 625
BccI	CCATC	1 cut(s)	649
BcgI	CGANNNNNNTGC	2 cut(s)	575, 609
BciT130I	CCWGG	1 cut(s)	19
BciVI	GTATCC	1 cut(s)	266
BclI	TGATCA	1 cut(s)	262
BcoDI	GTCTC	1 cut(s)	74
BfaI	CTAG	2 cut(s)	86, 278
BfmI	CTRYAG	4 cut(s)	116, 132, 306, 555
BfoI	RGCGCY	1 cut(s)	662
BfuAI	ACCTGC	1 cut(s)	559
BfuI	GTATCC	1 cut(s)	266
BmcAI	AGTACT	1 cut(s)	114
Bme1390I	CCNGG	1 cut(s)	19
Bme18I	GGWCC	1 cut(s)	571
BmgT120I	GGNCC	2 cut(s)	147, 571
BmiI	GGNNCC	2 cut(s)	511, 573
BmrFI	CCNGG	1 cut(s)	19
BmsI	GCATC	1 cut(s)	301
BpmI	CTGGAG	2 cut(s)	345, 546
BpuEI	CTTGAG	3 cut(s)	116, 337, 515
BsaJI	CCNNGG	1 cut(s)	150
BsaXI	ACNNNNNCTCC	4 cut(s)	535, 565, 583, 613
Bse1I	ACTGG	2 cut(s)	328, 563
Bse3DI	GCAATG	1 cut(s)	351
BseBI	CCWGG	1 cut(s)	19
BseDI	CCNNGG	1 cut(s)	150
BseGI	GGATG	2 cut(s)	394, 481
BseMI	GCAATG	1 cut(s)	351
BseMII	CTCAG	1 cut(s)	642
BseNI	ACTGG	2 cut(s)	328, 563
BseRI	GAGGAG	2 cut(s)	512, 591
BseSI	GKGCMC	1 cut(s)	55
BseXI	GCAGC	7 cut(s)	118, 232, 237, 244, 316, 569, 625
BseYI	CCCAGC	1 cut(s)	574
BsgI	GTGCAG	1 cut(s)	587
BshFI	GGCC	2 cut(s)	128, 149
BshNI	GGYRCC	1 cut(s)	509
BslFI	GGGAC	1 cut(s)	557
BsmAI	GTCTC	1 cut(s)	74
BsmBI	CGTCTC	1 cut(s)	74
BsmFI	GGGAC	1 cut(s)	557
BsnI	GGCC	2 cut(s)	128, 149
Bsp1286I	GDGCHC	1 cut(s)	55
Bsp143I	GATC	1 cut(s)	262
BspACI	CCGC	3 cut(s)	129, 182, 459
BspANI	GGCC	2 cut(s)	128, 149
BspCNI	CTCAG	1 cut(s)	643
BspLI	GGNNCC	2 cut(s)	511, 573
BspMAI	CTGCAG	2 cut(s)	136, 559
BspMI	ACCTGC	1 cut(s)	559
BspT107I	GGYRCC	1 cut(s)	509
BsrDI	GCAATG	1 cut(s)	351
BsrI	ACTGG	2 cut(s)	328, 563
BssECI	CCNNGG	1 cut(s)	150
BssMI	GATC	1 cut(s)	262
BssT1I	CCWWGG	1 cut(s)	150
Bst2UI	CCWGG	1 cut(s)	19
Bst4CI	ACNGT	2 cut(s)	50, 307
Bst6I	CTCTTC	2 cut(s)	194, 200
BstC8I	GCNNGC	2 cut(s)	540, 648
BstDEI	CTNAG	2 cut(s)	64, 651
BstF5I	GGATG	2 cut(s)	394, 481
BstH2I	RGCGCY	1 cut(s)	662
BstHHI	GCGC	2 cut(s)	615, 661
BstKTI	GATC	1 cut(s)	265
BstMAI	GTCTC	1 cut(s)	74
BstMBI	GATC	1 cut(s)	262
BstMWI	GCNNNNNNNGC	6 cut(s)	91, 229, 548, 557, 647, 656
BstNI	CCWGG	1 cut(s)	19
BstSCI	CCNGG	1 cut(s)	17
BstSFI	CTRYAG	4 cut(s)	116, 132, 306, 555
BstSLI	GKGCMC	1 cut(s)	55
BstV1I	GCAGC	7 cut(s)	118, 232, 237, 244, 316, 569, 625
BsuI	GTATCC	1 cut(s)	266
BsuRI	GGCC	2 cut(s)	128, 149
BtsCI	GGATG	2 cut(s)	394, 481
BtsIMutI	CAGTG	3 cut(s)	55, 570, 615
BveI	ACCTGC	1 cut(s)	559
Cac8I	GCNNGC	2 cut(s)	540, 648
CaiI	CAGNNNCTG	1 cut(s)	461
CfoI	GCGC	2 cut(s)	615, 661
Cfr13I	GGNCC	2 cut(s)	147, 571
CseI	GACGC	1 cut(s)	91
Csp6I	GTAC	1 cut(s)	113
CviAII	CATG	3 cut(s)	10, 260, 415
CviQI	GTAC	1 cut(s)	113
DdeI	CTNAG	2 cut(s)	64, 651
DpnI	GATC	1 cut(s)	264
DpnII	GATC	1 cut(s)	262
Eam1104I	CTCTTC	2 cut(s)	194, 200
EarI	CTCTTC	2 cut(s)	194, 200
Eco130I	CCWWGG	1 cut(s)	150
Eco47I	GGWCC	1 cut(s)	571
Eco57I	CTGAAG	2 cut(s)	518, 639
EcoO109I	RGGNCCY	1 cut(s)	571
EcoRII	CCWGG	1 cut(s)	17
EcoT14I	CCWWGG	1 cut(s)	150
ErhI	CCWWGG	1 cut(s)	150
Esp3I	CGTCTC	1 cut(s)	74
FaeI	CATG	3 cut(s)	13, 263, 418
FaiI	YATR	8 cut(s)	11, 188, 214, 216, 261, 365, 386, 416
FalI	AAGNNNNNCTT	4 cut(s)	477, 509, 513, 545
FaqI	GGGAC	1 cut(s)	557
FatI	CATG	3 cut(s)	9, 259, 414
FbaI	TGATCA	1 cut(s)	262
FokI	GGATG	2 cut(s)	401, 488
FspBI	CTAG	2 cut(s)	86, 278
GlaI	GCGC	2 cut(s)	614, 660
GsaI	CCCAGC	1 cut(s)	578
GsuI	CTGGAG	2 cut(s)	345, 546
HaeII	RGCGCY	1 cut(s)	662
HaeIII	GGCC	2 cut(s)	128, 149
HgaI	GACGC	1 cut(s)	91
HhaI	GCGC	2 cut(s)	615, 661
Hin1II	CATG	3 cut(s)	13, 263, 418
Hin6I	GCGC	2 cut(s)	613, 659
HinP1I	GCGC	2 cut(s)	613, 659
HincII	GTYRAC	2 cut(s)	6, 441
HindII	GTYRAC	2 cut(s)	6, 441
HphI	GGTGA	2 cut(s)	7, 151
Hpy166II	GTNNAC	4 cut(s)	6, 15, 376, 441
Hpy188I	TCNGA	1 cut(s)	267
Hpy8I	GTNNAC	4 cut(s)	6, 15, 376, 441
HpyAV	CCTTC	5 cut(s)	118, 275, 334, 500, 576
HpyCH4III	ACNGT	2 cut(s)	50, 307
HpyCH4V	TGCA	6 cut(s)	134, 287, 349, 557, 568, 646
HpyF10VI	GCNNNNNNNGC	6 cut(s)	91, 229, 548, 557, 647, 656
HpyF3I	CTNAG	2 cut(s)	64, 651
Hsp92II	CATG	3 cut(s)	13, 263, 418
HspAI	GCGC	2 cut(s)	613, 659
Ksp22I	TGATCA	1 cut(s)	262
Kzo9I	GATC	1 cut(s)	262
LmnI	GCTCC	4 cut(s)	326, 499, 556, 565
Lsp1109I	GCAGC	7 cut(s)	118, 232, 237, 244, 316, 569, 625
LweI	GCATC	1 cut(s)	301
MaeI	CTAG	2 cut(s)	86, 278
MalI	GATC	1 cut(s)	264
MboI	GATC	1 cut(s)	262
MboII	GAAGA	8 cut(s)	133, 211, 217, 524, 533, 632, 635, 638
MfeI	CAATTG	1 cut(s)	447
MhlI	GDGCHC	1 cut(s)	55
MluCI	AATT	5 cut(s)	241, 447, 479, 515, 632
MnlI	CCTC	6 cut(s)	195, 201, 466, 490, 609, 612
MroXI	GAANNNNTTC	1 cut(s)	528
MseI	TTAA	1 cut(s)	396
MspA1I	CMGCKG	4 cut(s)	131, 250, 461, 578
MspR9I	CCNGG	1 cut(s)	19
MunI	CAATTG	1 cut(s)	447
MvaI	CCWGG	1 cut(s)	19
MwoI	GCNNNNNNNGC	6 cut(s)	91, 229, 548, 557, 647, 656
NdeII	GATC	1 cut(s)	262
NlaIII	CATG	3 cut(s)	13, 263, 418
NlaIV	GGNNCC	2 cut(s)	511, 573
PdmI	GAANNNNTTC	1 cut(s)	528
PpuMI	RGGWCCY	1 cut(s)	571
PshBI	ATTAAT	1 cut(s)	396
Psp5II	RGGWCCY	1 cut(s)	571
Psp6I	CCWGG	1 cut(s)	17
PspFI	CCCAGC	1 cut(s)	574
PspGI	CCWGG	1 cut(s)	17
PspN4I	GGNNCC	2 cut(s)	511, 573
PspPI	GGNCC	2 cut(s)	147, 571
PspPPI	RGGWCCY	1 cut(s)	571
PstI	CTGCAG	2 cut(s)	136, 559
PstNI	CAGNNNCTG	1 cut(s)	461
PvuII	CAGCTG	2 cut(s)	250, 578
RsaI	GTAC	1 cut(s)	114
RsaNI	GTAC	1 cut(s)	113
SaqAI	TTAA	1 cut(s)	396
Sau3AI	GATC	1 cut(s)	262
Sau96I	GGNCC	2 cut(s)	147, 571
ScaI	AGTACT	1 cut(s)	114
ScrFI	CCNGG	1 cut(s)	19
SduI	GDGCHC	1 cut(s)	55
SfaNI	GCATC	1 cut(s)	301
SfcI	CTRYAG	4 cut(s)	116, 132, 306, 555
SinI	GGWCC	1 cut(s)	571
SmlI	CTYRAG	3 cut(s)	95, 316, 494
SmoI	CTYRAG	3 cut(s)	95, 316, 494
Sse9I	AATT	5 cut(s)	241, 447, 479, 515, 632
SsiI	CCGC	3 cut(s)	129, 182, 459
SspMI	CTAG	2 cut(s)	86, 278
StyD4I	CCNGG	1 cut(s)	17
StyI	CCWWGG	1 cut(s)	150
TaaI	ACNGT	2 cut(s)	50, 307
TasI	AATT	5 cut(s)	241, 447, 479, 515, 632
TatI	WGTACW	1 cut(s)	112
TauI	GCSGC	3 cut(s)	131, 185, 461
Tru1I	TTAA	1 cut(s)	396
Tru9I	TTAA	1 cut(s)	396
TscAI	CASTG	3 cut(s)	55, 570, 622
TseI	GCWGC	7 cut(s)	131, 220, 232, 250, 329, 557, 638
TspDTI	ATGAA	4 cut(s)	353, 431, 492, 645
TspGWI	ACGGA	1 cut(s)	422
TspRI	CASTG	3 cut(s)	55, 570, 622
VpaK11BI	GGWCC	1 cut(s)	571
VspI	ATTAAT	1 cut(s)	396
XapI	RAATTY	1 cut(s)	241
XmnI	GAANNNNTTC	1 cut(s)	528
XspI	CTAG	2 cut(s)	86, 278
ZrmI	AGTACT	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.