Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0000584

Physical Location & Seq

Genomic Coordinates Forward (+)

3561136 .. 3562801

Gene Structure 1666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g05890.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGATAAGTAAATGTGACGATGTTTTTTTAACTAACTTTCCTACCCATAAAAACCTACCAATTTTTAGTTCTCCCTCCACATTACTCTTTCACGGTTTACTGTTCACCTGTCCAAGCAACCTCACACGGATCCCCCAAGTTCTTCCCTTTCAACGCGGTTTTCAATATTGGGTCAAAGTCACTGATCAAAACTTTCGATTTGGTTGCAGGGTTTTTAAAGTCGGTTGCTTTCTCTTGTTCTGGGAACCGATCGAAGCGAAAATGTTCAAGCGAGCGTTTGGGAAGGCTAAGCAGGAGGCCGGTCCCCTGCCCACGATTCACAAATTAAACGATACACTTGACATGCTGGAGAAGAAGGAGAAAGTGCTTGTGAAGAAGGCAGCACAAGAGACTGAGAAAGCTAAACAATTTACTCAAGCGAAAAACCGAAATGCGGCGATAAAGTGTTTAAAAAGGAAGAGGCTTTACGAACAACAAATTGAACAGCTTGGAAATTTCCAATTGCGTATTCATCGATCAGATGATAATGCTGGAAGGTGCAAACGCTACAACAGAAACTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000815 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0006810 GO:0006900 GO:0006996 GO:0007032 GO:0008150 GO:0009987 GO:0010008 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0036452 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0061024 GO:0070676 GO:0071840 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

188

Amino Acids

21.88

Weight (kDa)

9.9

Isoelectric Point (pI)

41.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000584)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19830 AT2G19830 AT4G29160 AT4G29160 AT4G29160
fragaria_vesca	FvH4_1g06720 FvH4_1g06720 FvH4_1g06720 FvH4_2g32330 FvH4_2g32330 FvH4_4g20950
malus_domestica	MD02G1072100.v1.1 MD08G1074600.v1.1 MD15G1062300.v1.1 MD15G1201900.v1.1
prunus_persica	Prupe.1G416300_v2.0.a1 Prupe.1G416300_v2.0.a1 Prupe.7G215600_v2.0.a1 Prupe.7G215600_v2.0.a1 Prupe.7G215600_v2.0.a1
pyrus_communis	pycom02g05610 pycom08g06160 pycom15g05890 pycom15g05900 pycom15g17920
rosa_chinensis	RchiOBHm_Chr2g0092461 RchiOBHm_Chr4g0426411 RchiOBHm_Chr4g0426421 RchiOBHm_Chr6g0310361 RchiOBHm_Chr7g0204861 RchiOBHm_Chr7g0204871 RchiOBHm_Chr7g0204891
rosa_laevigata	RLG00000003423 RLG00000003426 RLG00000007295 RLG00000007296 RLG00000010489 RLG00000016312
rosa_multiflora	Rmu_co8485477.1_g000001 Rmu_sc0001361.1_g000025 Rmu_sc0002180.1_g000006 Rmu_sc0002180.1_g000014 Rmu_sc0002180.1_g000015 Rmu_sc0002348.1_g000004 Rmu_sc0007942.1_g000001 Rmu_sc0042068.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149100 Rroxscaffold_3G00252690 Rroxscaffold_7G00158620
rosa_rugosa	Rorug02G0026500 Rorug04G0210700 Rorug04G0211100 Rorug06G0379300 Rorug07G0086400
rosa_samantha	Rh2AG072400 Rh2BG072800 Rh2CG074000 Rh2DG070800 Rh4AG267800 Rh4BG273900 Rh4BG274000 Rh4CG288100 Rh4DG270700 Rh4DG270800 Rh6AG493500 Rh6BG503200 Rh6CG508200 Rh6DG494300 Rh7AG216800 Rh7AG216900 Rh7BG213900 Rh7CG230300 Rh7DG224400 Rh7DG224500 Rh7DG224700
rosa_wichuraiana	Rw2G006030 Rw4G023220 Rw6G042940 Rw7G018790 Rw7G018800 Rw7G018820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	156
AciI	CCGC	2 cut(s)	156, 434
AclWI	GGATC	2 cut(s)	124, 137
AcsI	RAATTY	1 cut(s)	493
AfiI	CCNNNNNNNGG	1 cut(s)	433
AgsI	TTSAA	4 cut(s)	152, 164, 268, 482
AjuI	GAANNNNNNNTTGG	4 cut(s)	52, 84, 492, 524
AluBI	AGCT	2 cut(s)	401, 487
AluI	AGCT	2 cut(s)	401, 487
Alw26I	GTCTC	1 cut(s)	383
AlwI	GGATC	2 cut(s)	124, 137
AlwNI	CAGNNNCTG	1 cut(s)	558
AoxI	GGCC	1 cut(s)	297
ApeKI	GCWGC	1 cut(s)	380
ApoI	RAATTY	1 cut(s)	493
Asp700I	GAANNNNTTC	1 cut(s)	263
AspS9I	GGNCC	1 cut(s)	302
AsuHPI	GGTGA	1 cut(s)	97
AvaII	GGWCC	1 cut(s)	302
BamHI	GGATCC	1 cut(s)	129
BarI	GAAGNNNNNNTAC	2 cut(s)	449, 481
BbvI	GCAGC	1 cut(s)	392
BcgI	CGANNNNNNTGC	2 cut(s)	186, 220
BclI	TGATCA	1 cut(s)	184
BcoDI	GTCTC	1 cut(s)	383
BisI	GCNGC	2 cut(s)	381, 435
BlpI	GCTNAGC	1 cut(s)	288
BlsI	GCNGC	2 cut(s)	382, 436
Bme18I	GGWCC	1 cut(s)	302
BmgT120I	GGNCC	1 cut(s)	302
BmiI	GGNNCC	3 cut(s)	131, 246, 304
BpmI	CTGGAG	1 cut(s)	368
Bpu1102I	GCTNAGC	1 cut(s)	288
BpuEI	CTTGAG	1 cut(s)	399
Bsa29I	ATCGAT	1 cut(s)	514
Bsc4I	CCNNNNNNNGG	1 cut(s)	433
Bse118I	RCCGGY	1 cut(s)	299
BseCI	ATCGAT	1 cut(s)	514
BseLI	CCNNNNNNNGG	1 cut(s)	433
BseMII	CTCAG	1 cut(s)	384
BseXI	GCAGC	1 cut(s)	392
Bsh1236I	CGCG	1 cut(s)	156
Bsh1285I	CGRYCG	1 cut(s)	252
BshFI	GGCC	1 cut(s)	299
BshVI	ATCGAT	1 cut(s)	514
BsiEI	CGRYCG	1 cut(s)	252
BsiSI	CCGG	1 cut(s)	300
BslFI	GGGAC	1 cut(s)	288
BslI	CCNNNNNNNGG	1 cut(s)	433
BsmAI	GTCTC	1 cut(s)	383
BsmFI	GGGAC	1 cut(s)	288
BsnI	GGCC	1 cut(s)	299
Bsp143I	GATC	4 cut(s)	129, 184, 249, 515
Bsp1720I	GCTNAGC	1 cut(s)	288
BspACI	CCGC	2 cut(s)	156, 434
BspANI	GGCC	1 cut(s)	299
BspCNI	CTCAG	1 cut(s)	385
BspDI	ATCGAT	1 cut(s)	514
BspFNI	CGCG	1 cut(s)	156
BspLI	GGNNCC	3 cut(s)	131, 246, 304
BspPI	GGATC	2 cut(s)	124, 137
BsrFI	RCCGGY	1 cut(s)	299
BssAI	RCCGGY	1 cut(s)	299
BssMI	GATC	4 cut(s)	129, 184, 249, 515
Bst4CI	ACNGT	3 cut(s)	95, 102, 560
Bst6I	CTCTTC	1 cut(s)	452
BstC8I	GCNNGC	1 cut(s)	273
BstDEI	CTNAG	2 cut(s)	288, 393
BstFNI	CGCG	1 cut(s)	156
BstKTI	GATC	4 cut(s)	132, 187, 252, 518
BstMAI	GTCTC	1 cut(s)	383
BstMBI	GATC	4 cut(s)	129, 184, 249, 515
BstMCI	CGRYCG	1 cut(s)	252
BstNSI	RCATGY	1 cut(s)	346
BstUI	CGCG	1 cut(s)	156
BstV1I	GCAGC	1 cut(s)	392
BstX2I	RGATCY	1 cut(s)	129
BstYI	RGATCY	1 cut(s)	129
Bsu15I	ATCGAT	1 cut(s)	514
BsuRI	GGCC	1 cut(s)	299
BsuTUI	ATCGAT	1 cut(s)	514
BtsIMutI	CAGTG	1 cut(s)	180
Cac8I	GCNNGC	1 cut(s)	273
CaiI	CAGNNNCTG	1 cut(s)	558
Cfr10I	RCCGGY	1 cut(s)	299
Cfr13I	GGNCC	1 cut(s)	302
ClaI	ATCGAT	1 cut(s)	514
CviAII	CATG	1 cut(s)	343
CviJI	RGCY	5 cut(s)	287, 299, 401, 463, 487
CviKI_1	RGCY	5 cut(s)	287, 299, 401, 463, 487
DdeI	CTNAG	2 cut(s)	288, 393
DpnI	GATC	4 cut(s)	131, 186, 251, 517
DpnII	GATC	4 cut(s)	129, 184, 249, 515
DraI	TTTAAA	2 cut(s)	217, 450
Eam1104I	CTCTTC	1 cut(s)	452
EarI	CTCTTC	1 cut(s)	452
Eco47I	GGWCC	1 cut(s)	302
FaeI	CATG	1 cut(s)	346
FaiI	YATR	2 cut(s)	48, 344
FaqI	GGGAC	1 cut(s)	288
FatI	CATG	1 cut(s)	342
FbaI	TGATCA	1 cut(s)	184
Fnu4HI	GCNGC	2 cut(s)	381, 435
Fsp4HI	GCNGC	2 cut(s)	381, 435
GluI	GCNGC	2 cut(s)	381, 435
GsuI	CTGGAG	1 cut(s)	368
HaeIII	GGCC	1 cut(s)	299
HapII	CCGG	1 cut(s)	300
Hin1II	CATG	1 cut(s)	346
HinfI	GANTC	1 cut(s)	316
HpaII	CCGG	1 cut(s)	300
HphI	GGTGA	1 cut(s)	97
Hpy166II	GTNNAC	2 cut(s)	98, 105
Hpy188I	TCNGA	1 cut(s)	520
Hpy8I	GTNNAC	2 cut(s)	98, 105
HpyAV	CCTTC	4 cut(s)	277, 349, 370, 528
HpyCH4III	ACNGT	3 cut(s)	95, 102, 560
HpyCH4V	TGCA	2 cut(s)	207, 540
HpyF3I	CTNAG	2 cut(s)	288, 393
Hsp92II	CATG	1 cut(s)	346
Ksp22I	TGATCA	1 cut(s)	184
Kzo9I	GATC	4 cut(s)	129, 184, 249, 515
LpnPI	CCDG	8 cut(s)	121, 193, 226, 278, 313, 320, 332, 516
Lsp1109I	GCAGC	1 cut(s)	392
MaeIII	GTNAC	2 cut(s)	14, 178
MalI	GATC	4 cut(s)	131, 186, 251, 517
MboI	GATC	4 cut(s)	129, 184, 249, 515
MboII	GAAGA	4 cut(s)	134, 364, 385, 469
MfeI	CAATTG	1 cut(s)	500
MflI	RGATCY	1 cut(s)	129
MluCI	AATT	6 cut(s)	60, 323, 407, 477, 493, 500
MnlI	CCTC	4 cut(s)	85, 131, 289, 453
MroXI	GAANNNNTTC	1 cut(s)	263
MseI	TTAA	4 cut(s)	29, 216, 326, 449
MspI	CCGG	1 cut(s)	300
MunI	CAATTG	1 cut(s)	500
MvnI	CGCG	1 cut(s)	156
NdeII	GATC	4 cut(s)	129, 184, 249, 515
NlaIII	CATG	1 cut(s)	346
NlaIV	GGNNCC	3 cut(s)	131, 246, 304
NmuCI	GTSAC	2 cut(s)	14, 178
NspI	RCATGY	1 cut(s)	346
PdmI	GAANNNNTTC	1 cut(s)	263
PfeI	GAWTC	1 cut(s)	316
PkrI	GCNGC	2 cut(s)	382, 436
Ple19I	CGATCG	1 cut(s)	252
PspN4I	GGNNCC	3 cut(s)	131, 246, 304
PspPI	GGNCC	1 cut(s)	302
PstNI	CAGNNNCTG	1 cut(s)	558
PsuI	RGATCY	1 cut(s)	129
PvuI	CGATCG	1 cut(s)	252
SaqAI	TTAA	4 cut(s)	29, 216, 326, 449
SatI	GCNGC	2 cut(s)	381, 435
Sau3AI	GATC	4 cut(s)	129, 184, 249, 515
Sau96I	GGNCC	1 cut(s)	302
SetI	ASST	6 cut(s)	57, 110, 123, 403, 489, 539
SinI	GGWCC	1 cut(s)	302
SmlI	CTYRAG	1 cut(s)	414
SmoI	CTYRAG	1 cut(s)	414
Sse9I	AATT	6 cut(s)	60, 323, 407, 477, 493, 500
SsiI	CCGC	2 cut(s)	156, 434
SspI	AATATT	1 cut(s)	167
TaaI	ACNGT	3 cut(s)	95, 102, 560
TaqI	TCGA	3 cut(s)	196, 252, 514
TasI	AATT	6 cut(s)	60, 323, 407, 477, 493, 500
TauI	GCSGC	1 cut(s)	437
TfiI	GAWTC	1 cut(s)	316
Tru1I	TTAA	4 cut(s)	29, 216, 326, 449
Tru9I	TTAA	4 cut(s)	29, 216, 326, 449
TscAI	CASTG	1 cut(s)	187
TseFI	GTSAC	2 cut(s)	14, 178
TseI	GCWGC	1 cut(s)	380
Tsp45I	GTSAC	2 cut(s)	14, 178
TspDTI	ATGAA	1 cut(s)	500
TspGWI	ACGGA	1 cut(s)	142
TspRI	CASTG	1 cut(s)	187
VpaK11BI	GGWCC	1 cut(s)	302
XapI	RAATTY	1 cut(s)	493
XceI	RCATGY	1 cut(s)	346
XmnI	GAANNNNTTC	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.