Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0000584

Physical Location & Seq

Genomic Coordinates Forward (+)

36145835 .. 36148239

Gene Structure 2405 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G416300.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGTTTAAGCGAGTATTTGGGAAAGCAAAGCAGGAAGCCAATGCCCTGCCAACTATACACAAATTAAACGATACACTTGAGATGTTAGAGAAAAAGGAGAAAGTTCTTGTAAAGAAGGCAGCTGCGGAGGTTGAGAAGGCTAAGCAATTTACTCAAGCACGAAACCGAACTGCGGCAATAAAATGTTTAAAGAGGAAAAGGCTTTACGAACAACAAATTGAGCAGCTTGGAAATTTCCAATTGCGCATTCATGATCAGATGATAATGCTGGAAGGTGCAAACGCTACAACGGAAACTGTTGATGCATTGAGAAGTGGAACATCTGTGATGAAGGCCATGAACAAGGCCACGAAAATTGATGATTTGGAGAAAACAATGGATGAGATCAATGACCAAACTGAAAGCATGAAGCAGATTCAGGAGGCATTATCAGCACCTATTGGTGCAGCAGCTGATTTTGATGAAGATGAATTGGAAGCAGAGCTTGAAGAACTGGAAGGAGCTGAATTGGAGGAGGAGCTTTTCCAGCCAGCCACAACTGCTCCCGCAGCTACAGTACACGTAAATGCCCCGGTAGGCAGGCAACCAACCCAACCAGCTCCTCAGAGGAACAACCGTGATGAGGATGAGCTTGCTGCATTACAGGCAGAGATGGCACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000815 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0006810 GO:0006900 GO:0006996 GO:0007032 GO:0008150 GO:0009987 GO:0010008 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0036452 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0061024 GO:0070676 GO:0071840 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

221

Amino Acids

24.55

Weight (kDa)

4.94

Isoelectric Point (pI)

47.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000584)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19830 AT2G19830 AT4G29160 AT4G29160 AT4G29160
fragaria_vesca	FvH4_1g06720 FvH4_1g06720 FvH4_1g06720 FvH4_2g32330 FvH4_2g32330 FvH4_4g20950
malus_domestica	MD02G1072100.v1.1 MD08G1074600.v1.1 MD15G1062300.v1.1 MD15G1201900.v1.1
prunus_persica	Prupe.1G416300_v2.0.a1 Prupe.1G416300_v2.0.a1 Prupe.7G215600_v2.0.a1 Prupe.7G215600_v2.0.a1 Prupe.7G215600_v2.0.a1
pyrus_communis	pycom02g05610 pycom08g06160 pycom15g05890 pycom15g05900 pycom15g17920
rosa_chinensis	RchiOBHm_Chr2g0092461 RchiOBHm_Chr4g0426411 RchiOBHm_Chr4g0426421 RchiOBHm_Chr6g0310361 RchiOBHm_Chr7g0204861 RchiOBHm_Chr7g0204871 RchiOBHm_Chr7g0204891
rosa_laevigata	RLG00000003423 RLG00000003426 RLG00000007295 RLG00000007296 RLG00000010489 RLG00000016312
rosa_multiflora	Rmu_co8485477.1_g000001 Rmu_sc0001361.1_g000025 Rmu_sc0002180.1_g000006 Rmu_sc0002180.1_g000014 Rmu_sc0002180.1_g000015 Rmu_sc0002348.1_g000004 Rmu_sc0007942.1_g000001 Rmu_sc0042068.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149100 Rroxscaffold_3G00252690 Rroxscaffold_7G00158620
rosa_rugosa	Rorug02G0026500 Rorug04G0210700 Rorug04G0211100 Rorug06G0379300 Rorug07G0086400
rosa_samantha	Rh2AG072400 Rh2BG072800 Rh2CG074000 Rh2DG070800 Rh4AG267800 Rh4BG273900 Rh4BG274000 Rh4CG288100 Rh4DG270700 Rh4DG270800 Rh6AG493500 Rh6BG503200 Rh6CG508200 Rh6DG494300 Rh7AG216800 Rh7AG216900 Rh7BG213900 Rh7CG230300 Rh7DG224400 Rh7DG224500 Rh7DG224700
rosa_wichuraiana	Rw2G006030 Rw4G023220 Rw6G042940 Rw7G018790 Rw7G018800 Rw7G018820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	245
AciI	CCGC	3 cut(s)	125, 173, 546
AcsI	RAATTY	1 cut(s)	232
AfaI	GTAC	1 cut(s)	558
AfiI	CCNNNNNNNGG	2 cut(s)	172, 622
AflIII	ACRYGT	1 cut(s)	559
AgsI	TTSAA	1 cut(s)	488
AjuI	GAANNNNNNNTTGG	2 cut(s)	231, 263
AluBI	AGCT	9 cut(s)	122, 226, 452, 484, 503, 520, 551, 599, 631
AluI	AGCT	9 cut(s)	122, 226, 452, 484, 503, 520, 551, 599, 631
AlwNI	CAGNNNCTG	1 cut(s)	452
AoxI	GGCC	2 cut(s)	333, 345
ApeKI	GCWGC	7 cut(s)	119, 122, 223, 446, 449, 548, 635
ApoI	RAATTY	1 cut(s)	232
AspLEI	GCGC	1 cut(s)	246
AsuC2I	CCSGG	1 cut(s)	572
BbvI	GCAGC	7 cut(s)	109, 131, 235, 458, 461, 560, 622
BccI	CCATC	1 cut(s)	646
BclI	TGATCA	1 cut(s)	253
BcnI	CCSGG	1 cut(s)	572
BfmI	CTRYAG	1 cut(s)	552
BisI	GCNGC	8 cut(s)	120, 123, 174, 224, 447, 450, 549, 636
BlpI	GCTNAGC	1 cut(s)	141
BlsI	GCNGC	8 cut(s)	121, 124, 175, 225, 448, 451, 550, 637
Bme1390I	CCNGG	1 cut(s)	572
BmrFI	CCNGG	1 cut(s)	572
BmsI	GCATC	1 cut(s)	292
Bpu1102I	GCTNAGC	1 cut(s)	141
BpuEI	CTTGAG	2 cut(s)	98, 138
BpuMI	CCSGG	1 cut(s)	572
BsaAI	YACGTR	1 cut(s)	562
BsaJI	CCNNGG	1 cut(s)	570
BsaXI	ACNNNNNCTCC	2 cut(s)	526, 556
Bsc4I	CCNNNNNNNGG	2 cut(s)	172, 622
Bse1I	ACTGG	1 cut(s)	498
BseDI	CCNNGG	1 cut(s)	570
BseGI	GGATG	2 cut(s)	385, 631
BseLI	CCNNNNNNNGG	2 cut(s)	172, 622
BseMII	CTCAG	1 cut(s)	617
BseNI	ACTGG	1 cut(s)	498
BseRI	GAGGAG	3 cut(s)	527, 530, 591
BseXI	GCAGC	7 cut(s)	109, 131, 235, 458, 461, 560, 622
BsgI	GTGCAG	1 cut(s)	465
BshFI	GGCC	2 cut(s)	335, 347
BsiSI	CCGG	1 cut(s)	572
BslI	CCNNNNNNNGG	2 cut(s)	172, 622
BsmI	GAATGC	1 cut(s)	246
BsnI	GGCC	2 cut(s)	335, 347
Bsp143I	GATC	2 cut(s)	253, 384
Bsp1720I	GCTNAGC	1 cut(s)	141
BspACI	CCGC	3 cut(s)	125, 173, 546
BspANI	GGCC	2 cut(s)	335, 347
BspCNI	CTCAG	1 cut(s)	616
BspHI	TCATGA	1 cut(s)	250
BsrI	ACTGG	1 cut(s)	498
BssECI	CCNNGG	1 cut(s)	570
BssMI	GATC	2 cut(s)	253, 384
Bst4CI	ACNGT	3 cut(s)	298, 556, 617
BstBAI	YACGTR	1 cut(s)	562
BstC8I	GCNNGC	3 cut(s)	531, 581, 633
BstDEI	CTNAG	2 cut(s)	141, 603
BstF5I	GGATG	2 cut(s)	385, 631
BstHHI	GCGC	1 cut(s)	246
BstKTI	GATC	2 cut(s)	256, 387
BstMBI	GATC	2 cut(s)	253, 384
BstMWI	GCNNNNNNNGC	6 cut(s)	431, 526, 539, 548, 644, 653
BstSCI	CCNGG	1 cut(s)	570
BstSFI	CTRYAG	1 cut(s)	552
BstV1I	GCAGC	7 cut(s)	109, 131, 235, 458, 461, 560, 622
BsuRI	GGCC	2 cut(s)	335, 347
BtsCI	GGATG	2 cut(s)	385, 631
Cac8I	GCNNGC	3 cut(s)	531, 581, 633
CaiI	CAGNNNCTG	1 cut(s)	452
CciI	TCATGA	1 cut(s)	250
CfoI	GCGC	1 cut(s)	246
Csp6I	GTAC	1 cut(s)	557
CspCI	CAANNNNNGTGG	2 cut(s)	337, 372
CviAII	CATG	3 cut(s)	251, 337, 406
CviQI	GTAC	1 cut(s)	557
DdeI	CTNAG	2 cut(s)	141, 603
DpnI	GATC	2 cut(s)	255, 386
DpnII	GATC	2 cut(s)	253, 384
DraI	TTTAAA	1 cut(s)	189
EcoT22I	ATGCAT	1 cut(s)	307
FaeI	CATG	3 cut(s)	254, 340, 409
FaiI	YATR	4 cut(s)	56, 252, 338, 407
FalI	AAGNNNNNCTT	2 cut(s)	468, 500
FatI	CATG	3 cut(s)	250, 336, 405
FauI	CCCGC	1 cut(s)	553
FbaI	TGATCA	1 cut(s)	253
Fnu4HI	GCNGC	8 cut(s)	120, 123, 174, 224, 447, 450, 549, 636
FokI	GGATG	2 cut(s)	392, 638
Fsp4HI	GCNGC	8 cut(s)	120, 123, 174, 224, 447, 450, 549, 636
FspI	TGCGCA	1 cut(s)	245
GlaI	GCGC	1 cut(s)	245
GluI	GCNGC	8 cut(s)	120, 123, 174, 224, 447, 450, 549, 636
HaeIII	GGCC	2 cut(s)	335, 347
HapII	CCGG	1 cut(s)	572
HhaI	GCGC	1 cut(s)	246
Hin1II	CATG	3 cut(s)	254, 340, 409
Hin6I	GCGC	1 cut(s)	244
HinP1I	GCGC	1 cut(s)	244
HinfI	GANTC	1 cut(s)	415
HpaII	CCGG	1 cut(s)	572
Hpy166II	GTNNAC	1 cut(s)	559
Hpy188I	TCNGA	2 cut(s)	258, 606
Hpy188III	TCNNGA	2 cut(s)	251, 419
Hpy8I	GTNNAC	1 cut(s)	559
HpyAV	CCTTC	5 cut(s)	109, 130, 266, 325, 491
HpyCH4III	ACNGT	3 cut(s)	298, 556, 617
HpyCH4IV	ACGT	1 cut(s)	561
HpyCH4V	TGCA	4 cut(s)	278, 305, 446, 638
HpyF10VI	GCNNNNNNNGC	6 cut(s)	431, 526, 539, 548, 644, 653
HpyF3I	CTNAG	2 cut(s)	141, 603
HpySE526I	ACGT	1 cut(s)	561
Hsp92II	CATG	3 cut(s)	254, 340, 409
HspAI	GCGC	1 cut(s)	244
Ksp22I	TGATCA	1 cut(s)	253
Kzo9I	GATC	2 cut(s)	253, 384
LmnI	GCTCC	4 cut(s)	500, 517, 547, 604
Lsp1109I	GCAGC	7 cut(s)	109, 131, 235, 458, 461, 560, 622
LweI	GCATC	1 cut(s)	292
MaeII	ACGT	1 cut(s)	561
MalI	GATC	2 cut(s)	255, 386
MboI	GATC	2 cut(s)	253, 384
MboII	GAAGA	2 cut(s)	476, 500
MfeI	CAATTG	1 cut(s)	239
MluCI	AATT	8 cut(s)	62, 146, 216, 232, 239, 354, 470, 506
MnlI	CCTC	8 cut(s)	121, 186, 415, 505, 508, 600, 612, 616
Mph1103I	ATGCAT	1 cut(s)	307
MseI	TTAA	4 cut(s)	6, 65, 188, 661
MslI	CAYNNNNRTG	1 cut(s)	564
MspA1I	CMGCKG	2 cut(s)	122, 452
MspI	CCGG	1 cut(s)	572
MspR9I	CCNGG	1 cut(s)	572
MunI	CAATTG	1 cut(s)	239
Mva1269I	GAATGC	1 cut(s)	246
MwoI	GCNNNNNNNGC	6 cut(s)	431, 526, 539, 548, 644, 653
NciI	CCSGG	1 cut(s)	572
NdeII	GATC	2 cut(s)	253, 384
NlaIII	CATG	3 cut(s)	254, 340, 409
NsbI	TGCGCA	1 cut(s)	245
NsiI	ATGCAT	1 cut(s)	307
PagI	TCATGA	1 cut(s)	250
PctI	GAATGC	1 cut(s)	246
PfeI	GAWTC	1 cut(s)	415
PkrI	GCNGC	8 cut(s)	121, 124, 175, 225, 448, 451, 550, 637
Ppu21I	YACGTR	1 cut(s)	562
PstNI	CAGNNNCTG	1 cut(s)	452
PvuII	CAGCTG	2 cut(s)	122, 452
RsaI	GTAC	1 cut(s)	558
RsaNI	GTAC	1 cut(s)	557
RseI	CAYNNNNRTG	1 cut(s)	564
SaqAI	TTAA	4 cut(s)	6, 65, 188, 661
SatI	GCNGC	8 cut(s)	120, 123, 174, 224, 447, 450, 549, 636
Sau3AI	GATC	2 cut(s)	253, 384
ScrFI	CCNGG	1 cut(s)	572
SfaNI	GCATC	1 cut(s)	292
SfcI	CTRYAG	1 cut(s)	552
SmiMI	CAYNNNNRTG	1 cut(s)	564
SmlI	CTYRAG	2 cut(s)	77, 153
SmoI	CTYRAG	2 cut(s)	77, 153
Sse9I	AATT	8 cut(s)	62, 146, 216, 232, 239, 354, 470, 506
SsiI	CCGC	3 cut(s)	125, 173, 546
StyD4I	CCNGG	1 cut(s)	570
TaaI	ACNGT	3 cut(s)	298, 556, 617
TaiI	ACGT	1 cut(s)	564
TasI	AATT	8 cut(s)	62, 146, 216, 232, 239, 354, 470, 506
TatI	WGTACW	1 cut(s)	556
TauI	GCSGC	1 cut(s)	176
TfiI	GAWTC	1 cut(s)	415
Tru1I	TTAA	4 cut(s)	6, 65, 188, 661
Tru9I	TTAA	4 cut(s)	6, 65, 188, 661
TseI	GCWGC	7 cut(s)	119, 122, 223, 446, 449, 548, 635
TspDTI	ATGAA	6 cut(s)	239, 344, 353, 422, 477, 483
TspGWI	ACGGA	1 cut(s)	305
XapI	RAATTY	1 cut(s)	232
Zsp2I	ATGCAT	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.