Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007942.1

Orthogroup ID

OG0000584

Physical Location & Seq

Genomic Coordinates Reverse (-)

952 .. 1353

Gene Structure 402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007942.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

atgttagacaagttacatgagacgcttgggatgcttgagaaaaatgagatcggactagagaagaaggctgctgttgaatttgaaagggccaaagaattcgccagagcaaagaataaaagctgtgctatacaatgtttgaagaggaagaggatgttcaaaaaccaaatagagaaagttggaaatttccgattgcgaatccataatcagatgatgatcctacaaggtgaaaaaatggaggcaatgcagaaagcaatcaacattgatgacgtggataagaccgtagatgagattaatgagaaacagatccaggaagctttgtcaactccaattggttcagctgctgattttgatgatgatgcattggtaacagaacttgaagagttggatcgaacatgcaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000815 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0006810 GO:0006900 GO:0006996 GO:0007032 GO:0008150 GO:0009987 GO:0010008 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0036452 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0061024 GO:0070676 GO:0071840 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

133

Amino Acids

15.29

Weight (kDa)

5.33

Isoelectric Point (pI)

34.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000584)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19830 AT2G19830 AT4G29160 AT4G29160 AT4G29160
fragaria_vesca	FvH4_1g06720 FvH4_1g06720 FvH4_1g06720 FvH4_2g32330 FvH4_2g32330 FvH4_4g20950
malus_domestica	MD02G1072100.v1.1 MD08G1074600.v1.1 MD15G1062300.v1.1 MD15G1201900.v1.1
prunus_persica	Prupe.1G416300_v2.0.a1 Prupe.1G416300_v2.0.a1 Prupe.7G215600_v2.0.a1 Prupe.7G215600_v2.0.a1 Prupe.7G215600_v2.0.a1
pyrus_communis	pycom02g05610 pycom08g06160 pycom15g05890 pycom15g05900 pycom15g17920
rosa_chinensis	RchiOBHm_Chr2g0092461 RchiOBHm_Chr4g0426411 RchiOBHm_Chr4g0426421 RchiOBHm_Chr6g0310361 RchiOBHm_Chr7g0204861 RchiOBHm_Chr7g0204871 RchiOBHm_Chr7g0204891
rosa_laevigata	RLG00000003423 RLG00000003426 RLG00000007295 RLG00000007296 RLG00000010489 RLG00000016312
rosa_multiflora	Rmu_co8485477.1_g000001 Rmu_sc0001361.1_g000025 Rmu_sc0002180.1_g000006 Rmu_sc0002180.1_g000014 Rmu_sc0002180.1_g000015 Rmu_sc0002348.1_g000004 Rmu_sc0007942.1_g000001 Rmu_sc0042068.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149100 Rroxscaffold_3G00252690 Rroxscaffold_7G00158620
rosa_rugosa	Rorug02G0026500 Rorug04G0210700 Rorug04G0211100 Rorug06G0379300 Rorug07G0086400
rosa_samantha	Rh2AG072400 Rh2BG072800 Rh2CG074000 Rh2DG070800 Rh4AG267800 Rh4BG273900 Rh4BG274000 Rh4CG288100 Rh4DG270700 Rh4DG270800 Rh6AG493500 Rh6BG503200 Rh6CG508200 Rh6DG494300 Rh7AG216800 Rh7AG216900 Rh7BG213900 Rh7CG230300 Rh7DG224400 Rh7DG224500 Rh7DG224700
rosa_wichuraiana	Rw2G006030 Rw4G023220 Rw6G042940 Rw7G018790 Rw7G018800 Rw7G018820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	208, 298, 393
AcsI	RAATTY	3 cut(s)	77, 95, 181
AgsI	TTSAA	5 cut(s)	77, 83, 139, 157, 377
AjiI	CACGTC	1 cut(s)	268
AjnI	CCWGG	1 cut(s)	306
AluBI	AGCT	3 cut(s)	120, 314, 338
AluI	AGCT	3 cut(s)	120, 314, 338
Alw26I	GTCTC	1 cut(s)	14
AlwI	GGATC	3 cut(s)	208, 298, 393
AlwNI	CAGNNNCTG	1 cut(s)	341
AoxI	GGCC	1 cut(s)	87
ApeKI	GCWGC	2 cut(s)	68, 338
ApoI	RAATTY	3 cut(s)	77, 95, 181
AseI	ATTAAT	1 cut(s)	291
AspS9I	GGNCC	1 cut(s)	87
AsuHPI	GGTGA	1 cut(s)	236
BbvI	GCAGC	2 cut(s)	55, 325
BciT130I	CCWGG	1 cut(s)	308
BcoDI	GTCTC	1 cut(s)	14
BfaI	CTAG	1 cut(s)	56
BisI	GCNGC	2 cut(s)	69, 339
BlsI	GCNGC	2 cut(s)	70, 340
Bme1390I	CCNGG	1 cut(s)	308
BmgBI	CACGTC	1 cut(s)	268
BmgT120I	GGNCC	1 cut(s)	87
BmrFI	CCNGG	1 cut(s)	308
BmsI	GCATC	2 cut(s)	21, 346
BpuEI	CTTGAG	1 cut(s)	56
BsaBI	GATNNNNATC	1 cut(s)	212
Bse3DI	GCAATG	1 cut(s)	246
Bse8I	GATNNNNATC	1 cut(s)	212
BseBI	CCWGG	1 cut(s)	308
BseGI	GGATG	2 cut(s)	36, 156
BseJI	GATNNNNATC	1 cut(s)	212
BseMI	GCAATG	1 cut(s)	246
BseXI	GCAGC	2 cut(s)	55, 325
BshFI	GGCC	1 cut(s)	89
BsmAI	GTCTC	1 cut(s)	14
BsmBI	CGTCTC	1 cut(s)	14
BsnI	GGCC	1 cut(s)	89
Bsp143I	GATC	4 cut(s)	48, 213, 303, 385
BspANI	GGCC	1 cut(s)	89
BspPI	GGATC	3 cut(s)	208, 298, 393
BsrDI	GCAATG	1 cut(s)	246
BssMI	GATC	4 cut(s)	48, 213, 303, 385
Bst2UI	CCWGG	1 cut(s)	308
Bst4CI	ACNGT	1 cut(s)	280
Bst6I	CTCTTC	3 cut(s)	134, 140, 372
BstF5I	GGATG	2 cut(s)	36, 156
BstKTI	GATC	4 cut(s)	51, 216, 306, 388
BstMAI	GTCTC	1 cut(s)	14
BstMBI	GATC	4 cut(s)	48, 213, 303, 385
BstMWI	GCNNNNNNNGC	1 cut(s)	31
BstNI	CCWGG	1 cut(s)	308
BstNSI	RCATGY	1 cut(s)	396
BstSCI	CCNGG	1 cut(s)	306
BstV1I	GCAGC	2 cut(s)	55, 325
BstX2I	RGATCY	1 cut(s)	303
BstYI	RGATCY	1 cut(s)	303
BsuRI	GGCC	1 cut(s)	89
BtrI	CACGTC	1 cut(s)	268
BtsCI	GGATG	2 cut(s)	36, 156
CaiI	CAGNNNCTG	1 cut(s)	341
Cfr13I	GGNCC	1 cut(s)	87
CseI	GACGC	1 cut(s)	31
CviAII	CATG	2 cut(s)	17, 393
CviJI	RGCY	5 cut(s)	68, 89, 120, 314, 338
CviKI_1	RGCY	5 cut(s)	68, 89, 120, 314, 338
DpnI	GATC	4 cut(s)	50, 215, 305, 387
DpnII	GATC	4 cut(s)	48, 213, 303, 385
Eam1104I	CTCTTC	3 cut(s)	134, 140, 372
EarI	CTCTTC	3 cut(s)	134, 140, 372
EcoRI	GAATTC	1 cut(s)	95
EcoRII	CCWGG	1 cut(s)	306
EcoT22I	ATGCAT	1 cut(s)	361
Esp3I	CGTCTC	1 cut(s)	14
FaeI	CATG	2 cut(s)	20, 396
FaiI	YATR	4 cut(s)	18, 128, 201, 394
FatI	CATG	2 cut(s)	16, 392
Fnu4HI	GCNGC	2 cut(s)	69, 339
FokI	GGATG	2 cut(s)	43, 163
Fsp4HI	GCNGC	2 cut(s)	69, 339
FspBI	CTAG	1 cut(s)	56
GluI	GCNGC	2 cut(s)	69, 339
HaeIII	GGCC	1 cut(s)	89
HgaI	GACGC	1 cut(s)	31
Hin1II	CATG	2 cut(s)	20, 396
HincII	GTYRAC	1 cut(s)	321
HindII	GTYRAC	1 cut(s)	321
HindIII	AAGCTT	1 cut(s)	312
HinfI	GANTC	1 cut(s)	195
HphI	GGTGA	1 cut(s)	236
Hpy166II	GTNNAC	1 cut(s)	321
Hpy188I	TCNGA	3 cut(s)	53, 188, 207
Hpy8I	GTNNAC	1 cut(s)	321
HpyAV	CCTTC	1 cut(s)	58
HpyCH4III	ACNGT	1 cut(s)	280
HpyCH4IV	ACGT	1 cut(s)	267
HpyCH4V	TGCA	3 cut(s)	244, 359, 396
HpyF10VI	GCNNNNNNNGC	1 cut(s)	31
HpySE526I	ACGT	1 cut(s)	267
Hsp92II	CATG	2 cut(s)	20, 396
Kzo9I	GATC	4 cut(s)	48, 213, 303, 385
LpnPI	CCDG	3 cut(s)	115, 293, 320
Lsp1109I	GCAGC	2 cut(s)	55, 325
LweI	GCATC	2 cut(s)	21, 346
MaeI	CTAG	1 cut(s)	56
MaeII	ACGT	1 cut(s)	267
MaeIII	GTNAC	2 cut(s)	12, 364
MalI	GATC	4 cut(s)	50, 215, 305, 387
MboI	GATC	4 cut(s)	48, 213, 303, 385
MboII	GAAGA	4 cut(s)	73, 151, 157, 389
MfeI	CAATTG	1 cut(s)	327
MflI	RGATCY	1 cut(s)	303
MluCI	AATT	5 cut(s)	77, 95, 181, 327, 397
MmeI	TCCRAC	2 cut(s)	157, 363
MnlI	CCTC	3 cut(s)	135, 141, 229
Mph1103I	ATGCAT	1 cut(s)	361
MseI	TTAA	1 cut(s)	291
MspA1I	CMGCKG	1 cut(s)	338
MspR9I	CCNGG	1 cut(s)	308
MunI	CAATTG	1 cut(s)	327
MvaI	CCWGG	1 cut(s)	308
MwoI	GCNNNNNNNGC	1 cut(s)	31
NdeII	GATC	4 cut(s)	48, 213, 303, 385
NlaIII	CATG	2 cut(s)	20, 396
NsiI	ATGCAT	1 cut(s)	361
NspI	RCATGY	1 cut(s)	396
PfeI	GAWTC	1 cut(s)	195
PfoI	TCCNGGA	1 cut(s)	306
PkrI	GCNGC	2 cut(s)	70, 340
PshBI	ATTAAT	1 cut(s)	291
Psp6I	CCWGG	1 cut(s)	306
PspGI	CCWGG	1 cut(s)	306
PspPI	GGNCC	1 cut(s)	87
PstNI	CAGNNNCTG	1 cut(s)	341
PsuI	RGATCY	1 cut(s)	303
PvuII	CAGCTG	1 cut(s)	338
SaqAI	TTAA	1 cut(s)	291
SatI	GCNGC	2 cut(s)	69, 339
Sau3AI	GATC	4 cut(s)	48, 213, 303, 385
Sau96I	GGNCC	1 cut(s)	87
ScrFI	CCNGG	1 cut(s)	308
SetI	ASST	5 cut(s)	122, 226, 270, 316, 340
SfaNI	GCATC	2 cut(s)	21, 346
SmlI	CTYRAG	1 cut(s)	35
SmoI	CTYRAG	1 cut(s)	35
Sse9I	AATT	5 cut(s)	77, 95, 181, 327, 397
SspMI	CTAG	1 cut(s)	56
StyD4I	CCNGG	1 cut(s)	306
TaaI	ACNGT	1 cut(s)	280
TaiI	ACGT	1 cut(s)	270
TaqI	TCGA	1 cut(s)	388
TasI	AATT	5 cut(s)	77, 95, 181, 327, 397
TfiI	GAWTC	1 cut(s)	195
Tru1I	TTAA	1 cut(s)	291
Tru9I	TTAA	1 cut(s)	291
TseI	GCWGC	2 cut(s)	68, 338
VspI	ATTAAT	1 cut(s)	291
XapI	RAATTY	3 cut(s)	77, 95, 181
XceI	RCATGY	1 cut(s)	396
XspI	CTAG	1 cut(s)	56
Zsp2I	ATGCAT	1 cut(s)	361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.