Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000584

Physical Location & Seq

Genomic Coordinates Reverse (-)

5533181 .. 5536526

Gene Structure 3346 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG072800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGCTTGAGAAAAAGGAGAAAGTACTACAGAAGAAGGCTGCTGCTGAAGTTGAAAGGGCCAAGGAGTTCACCAGAGCAAAGAATAAACGATCTGCTATACAATGTTTGAAGAGGAAGAAGCTGTACGAACAGCAAATAGAGCAGCTTGGAAACTTCCAACTCCGAATCCATGATCAGATGATAATGCTAGAAGGTGCAAAAGCCACTACTGAAACTGTAGATGCCTTGAGAACTGGAGCAGCTGCCATGAAGGCAATGCAGAAAGCAACGAACATAGATGACGTGGACAAGACCATGGATGAGATTAATGAGCAGACCGAGAACATGAAACAGATCCAGGAAGCTTTGTCAACTCCAATTGGTTCAGCTGCTGATTTTGATGAGGTTTGTATTATCTTAATGCCTTTCTTTATCTATGAAGGATCTGGCCTTTTTAGGACATATTGTTTTGTTTTCGTTGTATGTATTCAATATGTAGACCTACAGAAGTTGAGACCATTTTTGCTGTTGCAGGATGAATTGGAAGCAGAACTTGAAGAGCTGGAAGGTGCTGAGTTGGAAGAACAACTTCTTCAGCCTGCAACTACAGCTCCTGCAGCTCCAGTGCATGTCCCAGAAGGAAGGCAACCAACACGTCCTGTTCCCCAGAAGCGCACTGCCGAAGAAGATGAACTGGCTGCTTTGCAGGCTGAGATGGCACTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000815 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0006810 GO:0006900 GO:0006996 GO:0007032 GO:0008150 GO:0009987 GO:0010008 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0036452 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0061024 GO:0070676 GO:0071840 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

234

Amino Acids

26.46

Weight (kDa)

4.89

Isoelectric Point (pI)

54.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Snf7	PF03357	1 - 128	1.9e-35	Snf7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000584)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19830 AT2G19830 AT4G29160 AT4G29160 AT4G29160
fragaria_vesca	FvH4_1g06720 FvH4_1g06720 FvH4_1g06720 FvH4_2g32330 FvH4_2g32330 FvH4_4g20950
malus_domestica	MD02G1072100.v1.1 MD08G1074600.v1.1 MD15G1062300.v1.1 MD15G1201900.v1.1
prunus_persica	Prupe.1G416300_v2.0.a1 Prupe.1G416300_v2.0.a1 Prupe.7G215600_v2.0.a1 Prupe.7G215600_v2.0.a1 Prupe.7G215600_v2.0.a1
pyrus_communis	pycom02g05610 pycom08g06160 pycom15g05890 pycom15g05900 pycom15g17920
rosa_chinensis	RchiOBHm_Chr2g0092461 RchiOBHm_Chr4g0426411 RchiOBHm_Chr4g0426421 RchiOBHm_Chr6g0310361 RchiOBHm_Chr7g0204861 RchiOBHm_Chr7g0204871 RchiOBHm_Chr7g0204891
rosa_laevigata	RLG00000003423 RLG00000003426 RLG00000007295 RLG00000007296 RLG00000010489 RLG00000016312
rosa_multiflora	Rmu_co8485477.1_g000001 Rmu_sc0001361.1_g000025 Rmu_sc0002180.1_g000006 Rmu_sc0002180.1_g000014 Rmu_sc0002180.1_g000015 Rmu_sc0002348.1_g000004 Rmu_sc0007942.1_g000001 Rmu_sc0042068.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149100 Rroxscaffold_3G00252690 Rroxscaffold_7G00158620
rosa_rugosa	Rorug02G0026500 Rorug04G0210700 Rorug04G0211100 Rorug06G0379300 Rorug07G0086400
rosa_samantha	Rh2AG072400 Rh2BG072800 Rh2CG074000 Rh2DG070800 Rh4AG267800 Rh4BG273900 Rh4BG274000 Rh4CG288100 Rh4DG270700 Rh4DG270800 Rh6AG493500 Rh6BG503200 Rh6CG508200 Rh6DG494300 Rh7AG216800 Rh7AG216900 Rh7BG213900 Rh7CG230300 Rh7DG224400 Rh7DG224500 Rh7DG224700
rosa_wichuraiana	Rw2G006030 Rw4G023220 Rw6G042940 Rw7G018790 Rw7G018800 Rw7G018820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	477
AclWI	GGATC	2 cut(s)	328, 430
AcuI	CTGAAG	2 cut(s)	66, 557
AfaI	GTAC	2 cut(s)	24, 125
AflIII	ACRYGT	1 cut(s)	632
AgsI	TTSAA	4 cut(s)	53, 109, 470, 536
AjiI	CACGTC	2 cut(s)	283, 635
AjnI	CCWGG	1 cut(s)	336
AluBI	AGCT	8 cut(s)	121, 145, 242, 344, 368, 541, 590, 599
AluI	AGCT	8 cut(s)	121, 145, 242, 344, 368, 541, 590, 599
Alw26I	GTCTC	1 cut(s)	487
AlwI	GGATC	2 cut(s)	328, 430
AlwNI	CAGNNNCTG	2 cut(s)	371, 593
AoxI	GGCC	2 cut(s)	57, 427
ApeKI	GCWGC	8 cut(s)	38, 41, 142, 239, 242, 368, 596, 677
AseI	ATTAAT	1 cut(s)	306
Asp700I	GAANNNNTTC	1 cut(s)	567
AspLEI	GCGC	1 cut(s)	654
AspS9I	GGNCC	1 cut(s)	57
AsuHPI	GGTGA	1 cut(s)	61
BarI	GAAGNNNNNNTAC	2 cut(s)	107, 139
BbvI	GCAGC	8 cut(s)	25, 28, 154, 229, 251, 355, 608, 664
BccI	CCATC	1 cut(s)	688
BciT130I	CCWGG	1 cut(s)	338
BclI	TGATCA	1 cut(s)	172
BcoDI	GTCTC	1 cut(s)	487
BfaI	CTAG	1 cut(s)	188
BfmI	CTRYAG	5 cut(s)	26, 216, 482, 585, 594
BglI	GCCNNNNNGGC	1 cut(s)	251
BisI	GCNGC	8 cut(s)	39, 42, 143, 240, 243, 369, 597, 678
BlsI	GCNGC	8 cut(s)	40, 43, 144, 241, 244, 370, 598, 679
BmcAI	AGTACT	1 cut(s)	24
Bme1390I	CCNGG	1 cut(s)	338
BmgBI	CACGTC	2 cut(s)	283, 635
BmgT120I	GGNCC	1 cut(s)	57
BmrFI	CCNGG	1 cut(s)	338
BmsI	GCATC	1 cut(s)	211
BpmI	CTGGAG	2 cut(s)	255, 585
BpuEI	CTTGAG	2 cut(s)	26, 247
BsaI	GGTCTC	1 cut(s)	487
BsaJI	CCNNGG	2 cut(s)	60, 294
BsaXI	ACNNNNNCTCC	2 cut(s)	574, 604
Bse1I	ACTGG	3 cut(s)	238, 602, 678
Bse3DI	GCAATG	1 cut(s)	261
BseBI	CCWGG	1 cut(s)	338
BseDI	CCNNGG	2 cut(s)	60, 294
BseGI	GGATG	2 cut(s)	304, 520
BseMI	GCAATG	1 cut(s)	261
BseMII	CTCAG	2 cut(s)	543, 681
BseNI	ACTGG	3 cut(s)	238, 602, 678
BseXI	GCAGC	8 cut(s)	25, 28, 154, 229, 251, 355, 608, 664
BshFI	GGCC	2 cut(s)	59, 429
BslFI	GGGAC	1 cut(s)	596
BsmAI	GTCTC	1 cut(s)	487
BsmFI	GGGAC	1 cut(s)	596
BsnI	GGCC	2 cut(s)	59, 429
Bso31I	GGTCTC	1 cut(s)	487
Bsp143I	GATC	4 cut(s)	89, 172, 333, 422
Bsp19I	CCATGG	1 cut(s)	294
BspANI	GGCC	2 cut(s)	59, 429
BspCNI	CTCAG	2 cut(s)	544, 682
BspMAI	CTGCAG	1 cut(s)	598
BspPI	GGATC	2 cut(s)	328, 430
BspQI	GCTCTTC	1 cut(s)	531
BspTNI	GGTCTC	1 cut(s)	487
BsrDI	GCAATG	1 cut(s)	261
BsrI	ACTGG	3 cut(s)	238, 602, 678
BssECI	CCNNGG	2 cut(s)	60, 294
BssMI	GATC	4 cut(s)	89, 172, 333, 422
BssT1I	CCWWGG	2 cut(s)	60, 294
Bst2UI	CCWGG	1 cut(s)	338
Bst4CI	ACNGT	1 cut(s)	217
Bst6I	CTCTTC	2 cut(s)	104, 531
BstC8I	GCNNGC	2 cut(s)	579, 687
BstDEI	CTNAG	2 cut(s)	552, 690
BstDSI	CCRYGG	1 cut(s)	294
BstF5I	GGATG	2 cut(s)	304, 520
BstHHI	GCGC	1 cut(s)	654
BstKTI	GATC	4 cut(s)	92, 175, 336, 425
BstMAI	GTCTC	1 cut(s)	487
BstMBI	GATC	4 cut(s)	89, 172, 333, 422
BstMWI	GCNNNNNNNGC	6 cut(s)	139, 251, 587, 596, 686, 695
BstNI	CCWGG	1 cut(s)	338
BstNSI	RCATGY	1 cut(s)	611
BstSCI	CCNGG	1 cut(s)	336
BstSFI	CTRYAG	5 cut(s)	26, 216, 482, 585, 594
BstV1I	GCAGC	8 cut(s)	25, 28, 154, 229, 251, 355, 608, 664
BstX2I	RGATCY	2 cut(s)	333, 422
BstYI	RGATCY	2 cut(s)	333, 422
BsuRI	GGCC	2 cut(s)	59, 429
BtgI	CCRYGG	1 cut(s)	294
BtrI	CACGTC	2 cut(s)	283, 635
BtsCI	GGATG	2 cut(s)	304, 520
BtsI	GCAGTG	1 cut(s)	654
BtsIMutI	CAGTG	2 cut(s)	609, 654
Cac8I	GCNNGC	2 cut(s)	579, 687
CaiI	CAGNNNCTG	2 cut(s)	371, 593
CfoI	GCGC	1 cut(s)	654
Cfr13I	GGNCC	1 cut(s)	57
Csp6I	GTAC	2 cut(s)	23, 124
CviAII	CATG	5 cut(s)	170, 247, 295, 325, 608
CviQI	GTAC	2 cut(s)	23, 124
DdeI	CTNAG	2 cut(s)	552, 690
DpnI	GATC	4 cut(s)	91, 174, 335, 424
DpnII	GATC	4 cut(s)	89, 172, 333, 422
Eam1104I	CTCTTC	2 cut(s)	104, 531
EarI	CTCTTC	2 cut(s)	104, 531
Eco130I	CCWWGG	2 cut(s)	60, 294
Eco31I	GGTCTC	1 cut(s)	487
Eco57I	CTGAAG	2 cut(s)	66, 557
EcoRII	CCWGG	1 cut(s)	336
EcoT14I	CCWWGG	2 cut(s)	60, 294
ErhI	CCWWGG	2 cut(s)	60, 294
FaeI	CATG	5 cut(s)	173, 250, 298, 328, 611
FalI	AAGNNNNNCTT	4 cut(s)	516, 548, 552, 584
FaqI	GGGAC	1 cut(s)	596
FatI	CATG	5 cut(s)	169, 246, 294, 324, 607
FbaI	TGATCA	1 cut(s)	172
FblI	GTMKAC	1 cut(s)	477
Fnu4HI	GCNGC	8 cut(s)	39, 42, 143, 240, 243, 369, 597, 678
FokI	GGATG	2 cut(s)	311, 527
Fsp4HI	GCNGC	8 cut(s)	39, 42, 143, 240, 243, 369, 597, 678
FspBI	CTAG	1 cut(s)	188
GlaI	GCGC	1 cut(s)	653
GluI	GCNGC	8 cut(s)	39, 42, 143, 240, 243, 369, 597, 678
GsuI	CTGGAG	2 cut(s)	255, 585
HaeIII	GGCC	2 cut(s)	59, 429
HhaI	GCGC	1 cut(s)	654
Hin1II	CATG	5 cut(s)	173, 250, 298, 328, 611
Hin6I	GCGC	1 cut(s)	652
HinP1I	GCGC	1 cut(s)	652
HincII	GTYRAC	1 cut(s)	351
HindII	GTYRAC	1 cut(s)	351
HindIII	AAGCTT	1 cut(s)	342
HinfI	GANTC	1 cut(s)	165
HphI	GGTGA	1 cut(s)	61
Hpy166II	GTNNAC	4 cut(s)	69, 286, 351, 478
Hpy188I	TCNGA	2 cut(s)	164, 177
Hpy8I	GTNNAC	4 cut(s)	69, 286, 351, 478
HpyAV	CCTTC	7 cut(s)	28, 185, 244, 413, 539, 611, 615
HpyCH4III	ACNGT	1 cut(s)	217
HpyCH4IV	ACGT	2 cut(s)	282, 634
HpyCH4V	TGCA	7 cut(s)	197, 259, 511, 581, 596, 607, 685
HpyF10VI	GCNNNNNNNGC	6 cut(s)	139, 251, 587, 596, 686, 695
HpyF3I	CTNAG	2 cut(s)	552, 690
HpySE526I	ACGT	2 cut(s)	282, 634
Hsp92II	CATG	5 cut(s)	173, 250, 298, 328, 611
HspAI	GCGC	1 cut(s)	652
Ksp22I	TGATCA	1 cut(s)	172
Kzo9I	GATC	4 cut(s)	89, 172, 333, 422
LguI	GCTCTTC	1 cut(s)	531
LmnI	GCTCC	3 cut(s)	236, 595, 604
Lsp1109I	GCAGC	8 cut(s)	25, 28, 154, 229, 251, 355, 608, 664
LweI	GCATC	1 cut(s)	211
MaeI	CTAG	1 cut(s)	188
MaeII	ACGT	2 cut(s)	282, 634
MalI	GATC	4 cut(s)	91, 174, 335, 424
MboI	GATC	4 cut(s)	89, 172, 333, 422
MboII	GAAGA	8 cut(s)	43, 121, 127, 548, 563, 572, 674, 677
MfeI	CAATTG	1 cut(s)	357
MflI	RGATCY	2 cut(s)	333, 422
MluCI	AATT	2 cut(s)	357, 518
MmeI	TCCRAC	2 cut(s)	181, 537
MnlI	CCTC	2 cut(s)	105, 376
MroXI	GAANNNNTTC	1 cut(s)	567
MseI	TTAA	2 cut(s)	306, 398
MspA1I	CMGCKG	2 cut(s)	242, 368
MspR9I	CCNGG	1 cut(s)	338
MunI	CAATTG	1 cut(s)	357
MvaI	CCWGG	1 cut(s)	338
MwoI	GCNNNNNNNGC	6 cut(s)	139, 251, 587, 596, 686, 695
NcoI	CCATGG	1 cut(s)	294
NdeII	GATC	4 cut(s)	89, 172, 333, 422
NlaIII	CATG	5 cut(s)	173, 250, 298, 328, 611
NspI	RCATGY	1 cut(s)	611
PciSI	GCTCTTC	1 cut(s)	531
PdmI	GAANNNNTTC	1 cut(s)	567
PfeI	GAWTC	1 cut(s)	165
PfoI	TCCNGGA	1 cut(s)	336
PkrI	GCNGC	8 cut(s)	40, 43, 144, 241, 244, 370, 598, 679
PshBI	ATTAAT	1 cut(s)	306
Psp6I	CCWGG	1 cut(s)	336
PspGI	CCWGG	1 cut(s)	336
PspPI	GGNCC	1 cut(s)	57
PstI	CTGCAG	1 cut(s)	598
PstNI	CAGNNNCTG	2 cut(s)	371, 593
PsuI	RGATCY	2 cut(s)	333, 422
PvuII	CAGCTG	2 cut(s)	242, 368
RsaI	GTAC	2 cut(s)	24, 125
RsaNI	GTAC	2 cut(s)	23, 124
SapI	GCTCTTC	1 cut(s)	531
SaqAI	TTAA	2 cut(s)	306, 398
SatI	GCNGC	8 cut(s)	39, 42, 143, 240, 243, 369, 597, 678
Sau3AI	GATC	4 cut(s)	89, 172, 333, 422
Sau96I	GGNCC	1 cut(s)	57
ScaI	AGTACT	1 cut(s)	24
ScrFI	CCNGG	1 cut(s)	338
SfaNI	GCATC	1 cut(s)	211
SfcI	CTRYAG	5 cut(s)	26, 216, 482, 585, 594
SmlI	CTYRAG	2 cut(s)	5, 226
SmoI	CTYRAG	2 cut(s)	5, 226
Sse9I	AATT	2 cut(s)	357, 518
SspMI	CTAG	1 cut(s)	188
StyD4I	CCNGG	1 cut(s)	336
StyI	CCWWGG	2 cut(s)	60, 294
TaaI	ACNGT	1 cut(s)	217
TaiI	ACGT	2 cut(s)	285, 637
TaqII	GACCGA	1 cut(s)	332
TasI	AATT	2 cut(s)	357, 518
TatI	WGTACW	1 cut(s)	22
TfiI	GAWTC	1 cut(s)	165
Tru1I	TTAA	2 cut(s)	306, 398
Tru9I	TTAA	2 cut(s)	306, 398
TscAI	CASTG	2 cut(s)	609, 661
TseI	GCWGC	8 cut(s)	38, 41, 142, 239, 242, 368, 596, 677
TspDTI	ATGAA	5 cut(s)	263, 341, 432, 531, 684
TspRI	CASTG	2 cut(s)	609, 661
VspI	ATTAAT	1 cut(s)	306
XceI	RCATGY	1 cut(s)	611
XmiI	GTMKAC	1 cut(s)	477
XmnI	GAANNNNTTC	1 cut(s)	567
XspI	CTAG	1 cut(s)	188
ZrmI	AGTACT	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.