Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0000584

Physical Location & Seq

Genomic Coordinates Reverse (-)

65325629 .. 65328894

Gene Structure 3266 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG494300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGTTTAGCAAAGTGTTTGGGAAAACCAAGCAGGAAGCTAATCCCCTGCCAACCTTACACAAATTAAATGAGACACTTGAGATGCTGGAGAAGAAGGAGAAGTTCCTTGGGAAGAAGGCAGCTGCAGAGGTTGAGAAGGCGAAGCAATTTACGCAAGCAAAAAACCGAAATTCTGCAATAAAGTGTTTAAAGAGGAAGAAGCTTTATGAACAGCAAATTGAACAACTTGGAAATTTCCAACTGCGCATTCATGATCAGATGATAATGCTGGAAAGTGCCAACGCTACAACAGAAACAGTTGATGCATTGAGAAGTGGAACAGCTGTAATGAAGGCCATGAACAAGACAACAAATATTGATGATTTGGAGAAAACAATGGATGAGATCAATGACCAGACTGAAAGTATGAAACAGATTCAGGAGGCACTGTCGGCGCCTGTTGGTGCTGCAGCTGATTTTGATGAAGTAATGCATTTGAAAATTTTTAGTATTTGCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000815 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0006810 GO:0006900 GO:0006996 GO:0007032 GO:0008150 GO:0009987 GO:0010008 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0036452 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0061024 GO:0070676 GO:0071840 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

166

Amino Acids

18.78

Weight (kDa)

7.73

Isoelectric Point (pI)

39.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Snf7	PF03357	20 - 155	4.3e-36	Snf7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0000584)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19830 AT2G19830 AT4G29160 AT4G29160 AT4G29160
fragaria_vesca	FvH4_1g06720 FvH4_1g06720 FvH4_1g06720 FvH4_2g32330 FvH4_2g32330 FvH4_4g20950
malus_domestica	MD02G1072100.v1.1 MD08G1074600.v1.1 MD15G1062300.v1.1 MD15G1201900.v1.1
prunus_persica	Prupe.1G416300_v2.0.a1 Prupe.1G416300_v2.0.a1 Prupe.7G215600_v2.0.a1 Prupe.7G215600_v2.0.a1 Prupe.7G215600_v2.0.a1
pyrus_communis	pycom02g05610 pycom08g06160 pycom15g05890 pycom15g05900 pycom15g17920
rosa_chinensis	RchiOBHm_Chr2g0092461 RchiOBHm_Chr4g0426411 RchiOBHm_Chr4g0426421 RchiOBHm_Chr6g0310361 RchiOBHm_Chr7g0204861 RchiOBHm_Chr7g0204871 RchiOBHm_Chr7g0204891
rosa_laevigata	RLG00000003423 RLG00000003426 RLG00000007295 RLG00000007296 RLG00000010489 RLG00000016312
rosa_multiflora	Rmu_co8485477.1_g000001 Rmu_sc0001361.1_g000025 Rmu_sc0002180.1_g000006 Rmu_sc0002180.1_g000014 Rmu_sc0002180.1_g000015 Rmu_sc0002348.1_g000004 Rmu_sc0007942.1_g000001 Rmu_sc0042068.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149100 Rroxscaffold_3G00252690 Rroxscaffold_7G00158620
rosa_rugosa	Rorug02G0026500 Rorug04G0210700 Rorug04G0211100 Rorug06G0379300 Rorug07G0086400
rosa_samantha	Rh2AG072400 Rh2BG072800 Rh2CG074000 Rh2DG070800 Rh4AG267800 Rh4BG273900 Rh4BG274000 Rh4CG288100 Rh4DG270700 Rh4DG270800 Rh6AG493500 Rh6BG503200 Rh6CG508200 Rh6DG494300 Rh7AG216800 Rh7AG216900 Rh7BG213900 Rh7CG230300 Rh7DG224400 Rh7DG224500 Rh7DG224700
rosa_wichuraiana	Rw2G006030 Rw4G023220 Rw6G042940 Rw7G018790 Rw7G018800 Rw7G018820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	245
AccB1I	GGYRCC	1 cut(s)	433
AcsI	RAATTY	3 cut(s)	169, 232, 480
AcyI	GRCGYC	1 cut(s)	434
AgsI	TTSAA	2 cut(s)	221, 478
AjuI	GAANNNNNNNTTGG	2 cut(s)	231, 263
AluBI	AGCT	5 cut(s)	38, 122, 202, 323, 452
AluI	AGCT	5 cut(s)	38, 122, 202, 323, 452
Alw26I	GTCTC	1 cut(s)	65
AoxI	GGCC	1 cut(s)	333
ApeKI	GCWGC	4 cut(s)	119, 122, 446, 449
ApoI	RAATTY	3 cut(s)	169, 232, 480
AspLEI	GCGC	2 cut(s)	246, 436
BanI	GGYRCC	1 cut(s)	433
BbvI	GCAGC	4 cut(s)	109, 131, 433, 461
BclI	TGATCA	1 cut(s)	253
BcoDI	GTCTC	1 cut(s)	65
BfmI	CTRYAG	2 cut(s)	123, 447
BfoI	RGCGCY	1 cut(s)	437
BisI	GCNGC	4 cut(s)	120, 123, 447, 450
BlsI	GCNGC	4 cut(s)	121, 124, 448, 451
BmiI	GGNNCC	1 cut(s)	435
BmsI	GCATC	2 cut(s)	72, 292
BpmI	CTGGAG	1 cut(s)	107
BpuEI	CTTGAG	1 cut(s)	98
BsaHI	GRCGYC	1 cut(s)	434
BsaJI	CCNNGG	1 cut(s)	106
BsaXI	ACNNNNNCTCC	2 cut(s)	413, 443
BseDI	CCNNGG	1 cut(s)	106
BseGI	GGATG	1 cut(s)	385
BseXI	GCAGC	4 cut(s)	109, 131, 433, 461
BshFI	GGCC	1 cut(s)	335
BshNI	GGYRCC	1 cut(s)	433
BsmAI	GTCTC	1 cut(s)	65
BsmI	GAATGC	1 cut(s)	246
BsnI	GGCC	1 cut(s)	335
Bsp143I	GATC	2 cut(s)	253, 384
BspANI	GGCC	1 cut(s)	335
BspHI	TCATGA	1 cut(s)	250
BspLI	GGNNCC	1 cut(s)	435
BspMAI	CTGCAG	2 cut(s)	127, 451
BspT107I	GGYRCC	1 cut(s)	433
BssECI	CCNNGG	1 cut(s)	106
BssMI	GATC	2 cut(s)	253, 384
BssNI	GRCGYC	1 cut(s)	434
BssT1I	CCWWGG	1 cut(s)	106
Bst4CI	ACNGT	2 cut(s)	298, 429
BstACI	GRCGYC	1 cut(s)	434
BstC8I	GCNNGC	1 cut(s)	156
BstF5I	GGATG	1 cut(s)	385
BstH2I	RGCGCY	1 cut(s)	437
BstHHI	GCGC	2 cut(s)	246, 436
BstKTI	GATC	2 cut(s)	256, 387
BstMAI	GTCTC	1 cut(s)	65
BstMBI	GATC	2 cut(s)	253, 384
BstMWI	GCNNNNNNNGC	2 cut(s)	151, 431
BstSFI	CTRYAG	2 cut(s)	123, 447
BstV1I	GCAGC	4 cut(s)	109, 131, 433, 461
BsuRI	GGCC	1 cut(s)	335
BtsCI	GGATG	1 cut(s)	385
BtsIMutI	CAGTG	1 cut(s)	425
Cac8I	GCNNGC	1 cut(s)	156
CciI	TCATGA	1 cut(s)	250
CfoI	GCGC	2 cut(s)	246, 436
CviAII	CATG	2 cut(s)	251, 337
CviJI	RGCY	6 cut(s)	38, 122, 202, 323, 335, 452
CviKI_1	RGCY	6 cut(s)	38, 122, 202, 323, 335, 452
DinI	GGCGCC	1 cut(s)	435
DpnI	GATC	2 cut(s)	255, 386
DpnII	GATC	2 cut(s)	253, 384
DraI	TTTAAA	1 cut(s)	189
Eco130I	CCWWGG	1 cut(s)	106
EcoT14I	CCWWGG	1 cut(s)	106
EcoT22I	ATGCAT	2 cut(s)	307, 474
EgeI	GGCGCC	1 cut(s)	435
EheI	GGCGCC	1 cut(s)	435
ErhI	CCWWGG	1 cut(s)	106
FaeI	CATG	2 cut(s)	254, 340
FaiI	YATR	4 cut(s)	207, 252, 338, 407
FatI	CATG	2 cut(s)	250, 336
FbaI	TGATCA	1 cut(s)	253
Fnu4HI	GCNGC	4 cut(s)	120, 123, 447, 450
FokI	GGATG	1 cut(s)	392
Fsp4HI	GCNGC	4 cut(s)	120, 123, 447, 450
FspI	TGCGCA	1 cut(s)	245
GlaI	GCGC	2 cut(s)	245, 435
GluI	GCNGC	4 cut(s)	120, 123, 447, 450
GsuI	CTGGAG	1 cut(s)	107
HaeII	RGCGCY	1 cut(s)	437
HaeIII	GGCC	1 cut(s)	335
HhaI	GCGC	2 cut(s)	246, 436
Hin1I	GRCGYC	1 cut(s)	434
Hin1II	CATG	2 cut(s)	254, 340
Hin6I	GCGC	2 cut(s)	244, 434
HinP1I	GCGC	2 cut(s)	244, 434
HindIII	AAGCTT	1 cut(s)	200
HinfI	GANTC	1 cut(s)	415
Hpy188I	TCNGA	1 cut(s)	258
Hpy188III	TCNNGA	2 cut(s)	251, 419
HpyAV	CCTTC	4 cut(s)	88, 109, 130, 325
HpyCH4III	ACNGT	2 cut(s)	298, 429
HpyCH4V	TGCA	6 cut(s)	125, 176, 305, 449, 472, 495
HpyF10VI	GCNNNNNNNGC	2 cut(s)	151, 431
Hsp92I	GRCGYC	1 cut(s)	434
Hsp92II	CATG	2 cut(s)	254, 340
HspAI	GCGC	2 cut(s)	244, 434
KasI	GGCGCC	1 cut(s)	433
Ksp22I	TGATCA	1 cut(s)	253
Kzo9I	GATC	2 cut(s)	253, 384
LpnPI	CCDG	7 cut(s)	17, 59, 71, 254, 404, 407, 450
Lsp1109I	GCAGC	4 cut(s)	109, 131, 433, 461
LweI	GCATC	2 cut(s)	72, 292
MalI	GATC	2 cut(s)	255, 386
MboI	GATC	2 cut(s)	253, 384
MboII	GAAGA	3 cut(s)	103, 124, 208
MluCI	AATT	6 cut(s)	62, 146, 169, 216, 232, 480
Mly113I	GGCGCC	1 cut(s)	434
MmeI	TCCRAC	1 cut(s)	262
MnlI	CCTC	3 cut(s)	121, 186, 415
Mph1103I	ATGCAT	2 cut(s)	307, 474
MseI	TTAA	2 cut(s)	65, 188
MspA1I	CMGCKG	3 cut(s)	122, 323, 452
Mva1269I	GAATGC	1 cut(s)	246
MwoI	GCNNNNNNNGC	2 cut(s)	151, 431
NarI	GGCGCC	1 cut(s)	434
NdeII	GATC	2 cut(s)	253, 384
NlaIII	CATG	2 cut(s)	254, 340
NlaIV	GGNNCC	1 cut(s)	435
NsbI	TGCGCA	1 cut(s)	245
NsiI	ATGCAT	2 cut(s)	307, 474
PagI	TCATGA	1 cut(s)	250
PctI	GAATGC	1 cut(s)	246
PfeI	GAWTC	1 cut(s)	415
PkrI	GCNGC	4 cut(s)	121, 124, 448, 451
PluTI	GGCGCC	1 cut(s)	437
PspN4I	GGNNCC	1 cut(s)	435
PstI	CTGCAG	2 cut(s)	127, 451
PvuII	CAGCTG	3 cut(s)	122, 323, 452
SaqAI	TTAA	2 cut(s)	65, 188
SatI	GCNGC	4 cut(s)	120, 123, 447, 450
Sau3AI	GATC	2 cut(s)	253, 384
SetI	ASST	7 cut(s)	40, 56, 124, 132, 204, 325, 454
SfaNI	GCATC	2 cut(s)	72, 292
SfcI	CTRYAG	2 cut(s)	123, 447
SfoI	GGCGCC	1 cut(s)	435
SmlI	CTYRAG	1 cut(s)	77
SmoI	CTYRAG	1 cut(s)	77
Sse9I	AATT	6 cut(s)	62, 146, 169, 216, 232, 480
SspDI	GGCGCC	1 cut(s)	433
SspI	AATATT	1 cut(s)	355
StyI	CCWWGG	1 cut(s)	106
TaaI	ACNGT	2 cut(s)	298, 429
TasI	AATT	6 cut(s)	62, 146, 169, 216, 232, 480
TfiI	GAWTC	1 cut(s)	415
Tru1I	TTAA	2 cut(s)	65, 188
Tru9I	TTAA	2 cut(s)	65, 188
TscAI	CASTG	1 cut(s)	432
TseI	GCWGC	4 cut(s)	119, 122, 446, 449
TspDTI	ATGAA	6 cut(s)	222, 239, 344, 353, 422, 477
TspRI	CASTG	1 cut(s)	432
XapI	RAATTY	3 cut(s)	169, 232, 480
Zsp2I	ATGCAT	2 cut(s)	307, 474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.