RLG00000007296

Belongs to the SNF7 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000584
Physical Location & Seq
Reverse (-)
15510617 .. 15511122
506 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007296

Sequence Viewer

Length: 411 bp
ATGCTAGACAAGTTACACGAGACGCTTGGGATGCTTGAGAAAAATGACATCGGACCAGAGAAGAAGGCTGCTGTTGAATTTGAAACCGCGAAAGAATTCGCCAGAGCAAAGAATAAACGCTGTGCCATACAATTTTTGAAGAGGAAGAGGATGTTCGAAAAGAAAATAGAGAAAGTTGGAAATTTCCGATTGCGAATCCATAATCAGATGATGATCCTACAAGGTGAAAAAATGAAGGCAATGCAGAAAGAAATCAACATTGATGACGTGGATAAGACCGTACAACTTGAAGATCCAAAATTAGCTCTTGCAACTACAACTACAACTACAGTTCTTACAGGGATTAACCAACTCATCCTATTCCCCACAAGCACGAAGAAGATGAACAGGTTGCTTTGCAGGGTGAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 ko04217 map04144 map04217
Pfam Domains
Protein Families
Snf7

Protein Analysis

137

Amino Acids

15.78

Weight (kDa)

9.88

Isoelectric Point (pI)

32.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Snf7 PF03357 4 - 75 4.1e-09 Snf7
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000584)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19830 AT2G19830 AT4G29160 AT4G29160 AT4G29160
fragaria_vesca FvH4_1g06720 FvH4_1g06720 FvH4_1g06720 FvH4_2g32330 FvH4_2g32330 FvH4_4g20950
malus_domestica MD02G1072100.v1.1 MD08G1074600.v1.1 MD15G1062300.v1.1 MD15G1201900.v1.1
prunus_persica Prupe.1G416300_v2.0.a1 Prupe.1G416300_v2.0.a1 Prupe.7G215600_v2.0.a1 Prupe.7G215600_v2.0.a1 Prupe.7G215600_v2.0.a1
pyrus_communis pycom02g05610 pycom08g06160 pycom15g05890 pycom15g05900 pycom15g17920
rosa_chinensis RchiOBHm_Chr2g0092461 RchiOBHm_Chr4g0426411 RchiOBHm_Chr4g0426421 RchiOBHm_Chr6g0310361 RchiOBHm_Chr7g0204861 RchiOBHm_Chr7g0204871 RchiOBHm_Chr7g0204891
rosa_laevigata RLG00000003423 RLG00000003426 RLG00000007295 RLG00000007296 RLG00000010489 RLG00000016312
rosa_multiflora Rmu_co8485477.1_g000001 Rmu_sc0001361.1_g000025 Rmu_sc0002180.1_g000006 Rmu_sc0002180.1_g000014 Rmu_sc0002180.1_g000015 Rmu_sc0002348.1_g000004 Rmu_sc0007942.1_g000001 Rmu_sc0042068.1_g000001
rosa_roxburghii Rroxscaffold_2G00149100 Rroxscaffold_3G00252690 Rroxscaffold_7G00158620
rosa_rugosa Rorug02G0026500 Rorug04G0210700 Rorug04G0211100 Rorug06G0379300 Rorug07G0086400
rosa_samantha Rh2AG072400 Rh2BG072800 Rh2CG074000 Rh2DG070800 Rh4AG267800 Rh4BG273900 Rh4BG274000 Rh4CG288100 Rh4DG270700 Rh4DG270800 Rh6AG493500 Rh6BG503200 Rh6CG508200 Rh6DG494300 Rh7AG216800 Rh7AG216900 Rh7BG213900 Rh7CG230300 Rh7DG224400 Rh7DG224500 Rh7DG224700
rosa_wichuraiana Rw2G006030 Rw4G023220 Rw6G042940 Rw7G018790 Rw7G018800 Rw7G018820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 89
AciI CCGC 1 cut(s) 87
AclWI GGATC 2 cut(s) 208, 287
AcsI RAATTY 3 cut(s) 77, 95, 181
AfaI GTAC 1 cut(s) 282
AgsI TTSAA 4 cut(s) 77, 83, 139, 290
AjiI CACGTC 1 cut(s) 268
AluBI AGCT 1 cut(s) 305
AluI AGCT 1 cut(s) 305
Alw26I GTCTC 1 cut(s) 14
AlwI GGATC 2 cut(s) 208, 287
ApeKI GCWGC 1 cut(s) 68
ApoI RAATTY 3 cut(s) 77, 95, 181
Asp700I GAANNNNTTC 1 cut(s) 95
AspS9I GGNCC 1 cut(s) 53
AsuHPI GGTGA 1 cut(s) 236
AsuII TTCGAA 1 cut(s) 156
AvaII GGWCC 1 cut(s) 53
BauI CACGAG 1 cut(s) 17
BbvI GCAGC 1 cut(s) 55
BcoDI GTCTC 1 cut(s) 14
BfaI CTAG 1 cut(s) 5
BfmI CTRYAG 1 cut(s) 327
BisI GCNGC 1 cut(s) 69
BlsI GCNGC 1 cut(s) 70
Bme18I GGWCC 1 cut(s) 53
BmgBI CACGTC 1 cut(s) 268
BmgT120I GGNCC 1 cut(s) 53
BmsI GCATC 1 cut(s) 21
Bpu14I TTCGAA 1 cut(s) 156
BpuEI CTTGAG 1 cut(s) 56
BsaBI GATNNNNATC 1 cut(s) 212
Bse3DI GCAATG 1 cut(s) 246
Bse8I GATNNNNATC 1 cut(s) 212
BseGI GGATG 3 cut(s) 36, 156, 354
BseJI GATNNNNATC 1 cut(s) 212
BseMI GCAATG 1 cut(s) 246
BseXI GCAGC 1 cut(s) 55
Bsh1236I CGCG 1 cut(s) 89
BsmAI GTCTC 1 cut(s) 14
BsmBI CGTCTC 1 cut(s) 14
Bsp119I TTCGAA 1 cut(s) 156
Bsp143I GATC 2 cut(s) 213, 292
BspACI CCGC 1 cut(s) 87
BspFNI CGCG 1 cut(s) 89
BspPI GGATC 2 cut(s) 208, 287
BspT104I TTCGAA 1 cut(s) 156
BsrDI GCAATG 1 cut(s) 246
BssMI GATC 2 cut(s) 213, 292
BssSI CACGAG 1 cut(s) 17
Bst2BI CACGAG 1 cut(s) 17
Bst4CI ACNGT 2 cut(s) 280, 331
Bst6I CTCTTC 2 cut(s) 134, 140
BstBI TTCGAA 1 cut(s) 156
BstF5I GGATG 3 cut(s) 36, 156, 354
BstFNI CGCG 1 cut(s) 89
BstKTI GATC 2 cut(s) 216, 295
BstMAI GTCTC 1 cut(s) 14
BstMBI GATC 2 cut(s) 213, 292
BstMWI GCNNNNNNNGC 1 cut(s) 31
BstSFI CTRYAG 1 cut(s) 327
BstUI CGCG 1 cut(s) 89
BstV1I GCAGC 1 cut(s) 55
BstX2I RGATCY 1 cut(s) 292
BstYI RGATCY 1 cut(s) 292
BtrI CACGTC 1 cut(s) 268
BtsCI GGATG 3 cut(s) 36, 156, 354
Cfr13I GGNCC 1 cut(s) 53
CseI GACGC 1 cut(s) 31
Csp6I GTAC 1 cut(s) 281
CviJI RGCY 2 cut(s) 68, 305
CviKI_1 RGCY 2 cut(s) 68, 305
CviQI GTAC 1 cut(s) 281
DpnI GATC 2 cut(s) 215, 294
DpnII GATC 2 cut(s) 213, 292
Eam1104I CTCTTC 2 cut(s) 134, 140
EarI CTCTTC 2 cut(s) 134, 140
Eco47I GGWCC 1 cut(s) 53
EcoRI GAATTC 1 cut(s) 95
Esp3I CGTCTC 1 cut(s) 14
FaiI YATR 2 cut(s) 128, 201
Fnu4HI GCNGC 1 cut(s) 69
FokI GGATG 3 cut(s) 43, 163, 341
Fsp4HI GCNGC 1 cut(s) 69
FspBI CTAG 1 cut(s) 5
GluI GCNGC 1 cut(s) 69
HgaI GACGC 1 cut(s) 31
HinfI GANTC 1 cut(s) 195
HphI GGTGA 1 cut(s) 236
Hpy188I TCNGA 3 cut(s) 53, 188, 207
HpyAV CCTTC 2 cut(s) 58, 229
HpyCH4III ACNGT 2 cut(s) 280, 331
HpyCH4IV ACGT 1 cut(s) 267
HpyCH4V TGCA 3 cut(s) 244, 311, 399
HpyF10VI GCNNNNNNNGC 1 cut(s) 31
HpySE526I ACGT 1 cut(s) 267
Kzo9I GATC 2 cut(s) 213, 292
LpnPI CCDG 5 cut(s) 69, 115, 324, 373, 385
Lsp1109I GCAGC 1 cut(s) 55
LweI GCATC 1 cut(s) 21
MaeI CTAG 1 cut(s) 5
MaeII ACGT 1 cut(s) 267
MaeIII GTNAC 1 cut(s) 12
MalI GATC 2 cut(s) 215, 294
MboI GATC 2 cut(s) 213, 292
MboII GAAGA 6 cut(s) 73, 151, 157, 302, 388, 391
MflI RGATCY 1 cut(s) 292
MluCI AATT 5 cut(s) 77, 95, 131, 181, 299
MmeI TCCRAC 1 cut(s) 157
MnlI CCTC 2 cut(s) 135, 141
MroXI GAANNNNTTC 1 cut(s) 95
MseI TTAA 1 cut(s) 345
MvnI CGCG 1 cut(s) 89
MwoI GCNNNNNNNGC 1 cut(s) 31
NdeII GATC 2 cut(s) 213, 292
NspV TTCGAA 1 cut(s) 156
PdmI GAANNNNTTC 1 cut(s) 95
PfeI GAWTC 1 cut(s) 195
PkrI GCNGC 1 cut(s) 70
PspPI GGNCC 1 cut(s) 53
PsuI RGATCY 1 cut(s) 292
RsaI GTAC 1 cut(s) 282
RsaNI GTAC 1 cut(s) 281
SaqAI TTAA 1 cut(s) 345
SatI GCNGC 1 cut(s) 69
Sau3AI GATC 2 cut(s) 213, 292
Sau96I GGNCC 1 cut(s) 53
SetI ASST 4 cut(s) 226, 270, 307, 392
SfaNI GCATC 1 cut(s) 21
SfcI CTRYAG 1 cut(s) 327
SfuI TTCGAA 1 cut(s) 156
SinI GGWCC 1 cut(s) 53
SmlI CTYRAG 1 cut(s) 35
SmoI CTYRAG 1 cut(s) 35
Sse9I AATT 5 cut(s) 77, 95, 131, 181, 299
SsiI CCGC 1 cut(s) 87
SspMI CTAG 1 cut(s) 5
TaaI ACNGT 2 cut(s) 280, 331
TaiI ACGT 1 cut(s) 270
TaqI TCGA 1 cut(s) 156
TasI AATT 5 cut(s) 77, 95, 131, 181, 299
TfiI GAWTC 1 cut(s) 195
Tru1I TTAA 1 cut(s) 345
Tru9I TTAA 1 cut(s) 345
TseI GCWGC 1 cut(s) 68
TspDTI ATGAA 2 cut(s) 248, 398
VpaK11BI GGWCC 1 cut(s) 53
XapI RAATTY 3 cut(s) 77, 95, 181
XmnI GAANNNNTTC 1 cut(s) 95
XspI CTAG 1 cut(s) 5
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.