Rh4DG270700

Belongs to the SNF7 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
Physical Location & Seq
Forward (+)
49049967 .. 49061696
11730 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG270700.1

Sequence Viewer

Length: 369 bp
ATGTTAGACAAGTTACATGAGACGCTTGGGATGCTTGAGAAAAATGAGATCGGACTAGAGAAGAAGGCTGCTGTTGAATTTGAAAGGGCCAAAGAATTCGCCAGAGCAAAGAATAAAACCTGTGCTATACAATGTTTGAAGAGGAAGAGGATGTTCAAAGACCAAATAGAGAAAGTTGGAAATTTCCGATTGCGAATCCATAATCAGATGATGATCCTACAAGGTGAAAAAATGAAGGCAATGCAGAAAGCAATCAACATTGATGACGTGGATAAGACCGTAGATGAGATTAATGAGAAACAGATCCAGGAAGCTTTGTCAACTCCAATTGGTTCAGCTGCTGATTTTGATGATGATGCATTGGTTTAG

Protein Analysis

122

Amino Acids

14.0

Weight (kDa)

6.74

Isoelectric Point (pI)

31.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Snf7 PF03357 4 - 75 2.5e-09 Snf7
Snf7 PF03357 76 - 121 5e-08 Snf7
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000584)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19830 AT2G19830 AT4G29160 AT4G29160 AT4G29160
fragaria_vesca FvH4_1g06720 FvH4_1g06720 FvH4_1g06720 FvH4_2g32330 FvH4_2g32330 FvH4_4g20950
malus_domestica MD02G1072100.v1.1 MD08G1074600.v1.1 MD15G1062300.v1.1 MD15G1201900.v1.1
prunus_persica Prupe.1G416300_v2.0.a1 Prupe.1G416300_v2.0.a1 Prupe.7G215600_v2.0.a1 Prupe.7G215600_v2.0.a1 Prupe.7G215600_v2.0.a1
pyrus_communis pycom02g05610 pycom08g06160 pycom15g05890 pycom15g05900 pycom15g17920
rosa_chinensis RchiOBHm_Chr2g0092461 RchiOBHm_Chr4g0426411 RchiOBHm_Chr4g0426421 RchiOBHm_Chr6g0310361 RchiOBHm_Chr7g0204861 RchiOBHm_Chr7g0204871 RchiOBHm_Chr7g0204891
rosa_laevigata RLG00000003423 RLG00000003426 RLG00000007295 RLG00000007296 RLG00000010489 RLG00000016312
rosa_multiflora Rmu_co8485477.1_g000001 Rmu_sc0001361.1_g000025 Rmu_sc0002180.1_g000006 Rmu_sc0002180.1_g000014 Rmu_sc0002180.1_g000015 Rmu_sc0002348.1_g000004 Rmu_sc0007942.1_g000001 Rmu_sc0042068.1_g000001
rosa_roxburghii Rroxscaffold_2G00149100 Rroxscaffold_3G00252690 Rroxscaffold_7G00158620
rosa_rugosa Rorug02G0026500 Rorug04G0210700 Rorug04G0211100 Rorug06G0379300 Rorug07G0086400
rosa_samantha Rh2AG072400 Rh2BG072800 Rh2CG074000 Rh2DG070800 Rh4AG267800 Rh4BG273900 Rh4BG274000 Rh4CG288100 Rh4DG270700 Rh4DG270800 Rh6AG493500 Rh6BG503200 Rh6CG508200 Rh6DG494300 Rh7AG216800 Rh7AG216900 Rh7BG213900 Rh7CG230300 Rh7DG224400 Rh7DG224500 Rh7DG224700
rosa_wichuraiana Rw2G006030 Rw4G023220 Rw6G042940 Rw7G018790 Rw7G018800 Rw7G018820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 208, 298
AcsI RAATTY 3 cut(s) 77, 95, 181
AgsI TTSAA 4 cut(s) 77, 83, 139, 157
AjiI CACGTC 1 cut(s) 268
AjnI CCWGG 1 cut(s) 306
AluBI AGCT 2 cut(s) 314, 338
AluI AGCT 2 cut(s) 314, 338
Alw26I GTCTC 1 cut(s) 14
AlwI GGATC 2 cut(s) 208, 298
AlwNI CAGNNNCTG 1 cut(s) 341
AoxI GGCC 1 cut(s) 87
ApeKI GCWGC 2 cut(s) 68, 338
ApoI RAATTY 3 cut(s) 77, 95, 181
AseI ATTAAT 1 cut(s) 291
AspS9I GGNCC 1 cut(s) 87
AsuHPI GGTGA 1 cut(s) 236
BbvI GCAGC 2 cut(s) 55, 325
BciT130I CCWGG 1 cut(s) 308
BcoDI GTCTC 1 cut(s) 14
BfaI CTAG 1 cut(s) 56
BisI GCNGC 2 cut(s) 69, 339
BlsI GCNGC 2 cut(s) 70, 340
Bme1390I CCNGG 1 cut(s) 308
BmgBI CACGTC 1 cut(s) 268
BmgT120I GGNCC 1 cut(s) 87
BmrFI CCNGG 1 cut(s) 308
BmsI GCATC 2 cut(s) 21, 346
BpuEI CTTGAG 1 cut(s) 56
BsaBI GATNNNNATC 1 cut(s) 212
Bse3DI GCAATG 1 cut(s) 246
Bse8I GATNNNNATC 1 cut(s) 212
BseBI CCWGG 1 cut(s) 308
BseGI GGATG 2 cut(s) 36, 156
BseJI GATNNNNATC 1 cut(s) 212
BseMI GCAATG 1 cut(s) 246
BseXI GCAGC 2 cut(s) 55, 325
BshFI GGCC 1 cut(s) 89
BsmAI GTCTC 1 cut(s) 14
BsmBI CGTCTC 1 cut(s) 14
BsnI GGCC 1 cut(s) 89
Bsp143I GATC 3 cut(s) 48, 213, 303
BspANI GGCC 1 cut(s) 89
BspPI GGATC 2 cut(s) 208, 298
BsrDI GCAATG 1 cut(s) 246
BssMI GATC 3 cut(s) 48, 213, 303
Bst2UI CCWGG 1 cut(s) 308
Bst4CI ACNGT 1 cut(s) 280
Bst6I CTCTTC 2 cut(s) 134, 140
BstF5I GGATG 2 cut(s) 36, 156
BstKTI GATC 3 cut(s) 51, 216, 306
BstMAI GTCTC 1 cut(s) 14
BstMBI GATC 3 cut(s) 48, 213, 303
BstMWI GCNNNNNNNGC 1 cut(s) 31
BstNI CCWGG 1 cut(s) 308
BstSCI CCNGG 1 cut(s) 306
BstV1I GCAGC 2 cut(s) 55, 325
BstX2I RGATCY 1 cut(s) 303
BstYI RGATCY 1 cut(s) 303
BsuRI GGCC 1 cut(s) 89
BtrI CACGTC 1 cut(s) 268
BtsCI GGATG 2 cut(s) 36, 156
CaiI CAGNNNCTG 1 cut(s) 341
Cfr13I GGNCC 1 cut(s) 87
CseI GACGC 1 cut(s) 31
CviAII CATG 1 cut(s) 17
CviJI RGCY 4 cut(s) 68, 89, 314, 338
CviKI_1 RGCY 4 cut(s) 68, 89, 314, 338
DpnI GATC 3 cut(s) 50, 215, 305
DpnII GATC 3 cut(s) 48, 213, 303
Eam1104I CTCTTC 2 cut(s) 134, 140
EarI CTCTTC 2 cut(s) 134, 140
EcoRI GAATTC 1 cut(s) 95
EcoRII CCWGG 1 cut(s) 306
EcoT22I ATGCAT 1 cut(s) 361
Esp3I CGTCTC 1 cut(s) 14
FaeI CATG 1 cut(s) 20
FaiI YATR 3 cut(s) 18, 128, 201
FatI CATG 1 cut(s) 16
Fnu4HI GCNGC 2 cut(s) 69, 339
FokI GGATG 2 cut(s) 43, 163
Fsp4HI GCNGC 2 cut(s) 69, 339
FspBI CTAG 1 cut(s) 56
GluI GCNGC 2 cut(s) 69, 339
HaeIII GGCC 1 cut(s) 89
HgaI GACGC 1 cut(s) 31
Hin1II CATG 1 cut(s) 20
HincII GTYRAC 1 cut(s) 321
HindII GTYRAC 1 cut(s) 321
HindIII AAGCTT 1 cut(s) 312
HinfI GANTC 1 cut(s) 195
HphI GGTGA 1 cut(s) 236
Hpy166II GTNNAC 1 cut(s) 321
Hpy188I TCNGA 3 cut(s) 53, 188, 207
Hpy8I GTNNAC 1 cut(s) 321
HpyAV CCTTC 2 cut(s) 58, 229
HpyCH4III ACNGT 1 cut(s) 280
HpyCH4IV ACGT 1 cut(s) 267
HpyCH4V TGCA 2 cut(s) 244, 359
HpyF10VI GCNNNNNNNGC 1 cut(s) 31
HpySE526I ACGT 1 cut(s) 267
Hsp92II CATG 1 cut(s) 20
Kzo9I GATC 3 cut(s) 48, 213, 303
LpnPI CCDG 4 cut(s) 115, 133, 293, 320
Lsp1109I GCAGC 2 cut(s) 55, 325
LweI GCATC 2 cut(s) 21, 346
MaeI CTAG 1 cut(s) 56
MaeII ACGT 1 cut(s) 267
MaeIII GTNAC 1 cut(s) 12
MalI GATC 3 cut(s) 50, 215, 305
MboI GATC 3 cut(s) 48, 213, 303
MboII GAAGA 3 cut(s) 73, 151, 157
MfeI CAATTG 1 cut(s) 327
MflI RGATCY 1 cut(s) 303
MluCI AATT 4 cut(s) 77, 95, 181, 327
MmeI TCCRAC 1 cut(s) 157
MnlI CCTC 2 cut(s) 135, 141
Mph1103I ATGCAT 1 cut(s) 361
MseI TTAA 1 cut(s) 291
MspA1I CMGCKG 1 cut(s) 338
MspR9I CCNGG 1 cut(s) 308
MunI CAATTG 1 cut(s) 327
MvaI CCWGG 1 cut(s) 308
MwoI GCNNNNNNNGC 1 cut(s) 31
NdeII GATC 3 cut(s) 48, 213, 303
NlaIII CATG 1 cut(s) 20
NsiI ATGCAT 1 cut(s) 361
PfeI GAWTC 1 cut(s) 195
PfoI TCCNGGA 1 cut(s) 306
PkrI GCNGC 2 cut(s) 70, 340
PshBI ATTAAT 1 cut(s) 291
Psp6I CCWGG 1 cut(s) 306
PspGI CCWGG 1 cut(s) 306
PspPI GGNCC 1 cut(s) 87
PstNI CAGNNNCTG 1 cut(s) 341
PsuI RGATCY 1 cut(s) 303
PvuII CAGCTG 1 cut(s) 338
SaqAI TTAA 1 cut(s) 291
SatI GCNGC 2 cut(s) 69, 339
Sau3AI GATC 3 cut(s) 48, 213, 303
Sau96I GGNCC 1 cut(s) 87
ScrFI CCNGG 1 cut(s) 308
SetI ASST 5 cut(s) 122, 226, 270, 316, 340
SfaNI GCATC 2 cut(s) 21, 346
SmlI CTYRAG 1 cut(s) 35
SmoI CTYRAG 1 cut(s) 35
Sse9I AATT 4 cut(s) 77, 95, 181, 327
SspMI CTAG 1 cut(s) 56
StyD4I CCNGG 1 cut(s) 306
TaaI ACNGT 1 cut(s) 280
TaiI ACGT 1 cut(s) 270
TasI AATT 4 cut(s) 77, 95, 181, 327
TfiI GAWTC 1 cut(s) 195
Tru1I TTAA 1 cut(s) 291
Tru9I TTAA 1 cut(s) 291
TseI GCWGC 2 cut(s) 68, 338
TspDTI ATGAA 1 cut(s) 248
VspI ATTAAT 1 cut(s) 291
XapI RAATTY 3 cut(s) 77, 95, 181
XspI CTAG 1 cut(s) 56
Zsp2I ATGCAT 1 cut(s) 361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.