Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0000584

Physical Location & Seq

Genomic Coordinates Forward (+)

6025321 .. 6027694

Gene Structure 2374 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1074600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGATCTCACCAAAAGGATCCGTAGAGGATCCTGCTGGCCACTTCAGGTCATCAACTTTACTCTTCACCAGTCCAACCTTCATCAGAAATCACCCAACTTCTTCCCTTCAACGCGGTTTTCAATATTGGTTTTTTAAAGTTGGTTGCTTTTTCTTGTTCTGGGAACCGATCGAAGCAAAAATGTTCAAGCGGGTGTTTGGGAAAGCTAAGCAGGAGGCCAATCCCCTGCCCACGATTCACAAATTAAACGATACACTTGAGATGCTGGAGAAGAAGGAGAAAGTGCTTGTGAAGAAGGCAGCTCAAGAGGTTGAGAAAGCTAAACAATTTACTCAAGCAAAAAACCGAAATGCGGCGATAAAGTGTTTAAAAAGGAAGAGACTTTACGAACAACAAATTGAACAGCTTGGGAATTTCCAATTGCGCATTCACGATCAGATGATAATGCTGGAAGGTGCAAACGCTACGACAGAAACTGTTGATGCATTGAGAAGTGGAACCGCTGTAATGAAGGCCATGAACAAGGCCACGAAAATTGAGGATTTGGAGAAAACAATGGATGAGATCAATGACCAAACTGAAAGCATGAAACAGATTCAGGAGGCACTGTCAGCACCTATCGGTGCAGCAGCTGATTTCGATGAGGATGAATTGGAGGCCGAGCTTGAAGAACTAGAAGGAGCTGAATTGGAGGAGGAGCTTCTCCAGCCAGCCACGAGTGCTCCGGCAGCTCCAGTATATGTAAATCCTGAAGCAGGCAGGCAACCAACCCGACCAGCTCCTCAGAGAAATAACCGTGAGGAAGATGAGCTTGCTGCATTACAGGCAGAGATGGCACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000815 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0006810 GO:0006900 GO:0006996 GO:0007032 GO:0008150 GO:0009987 GO:0010008 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0036452 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0061024 GO:0070676 GO:0071840 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

281

Amino Acids

31.61

Weight (kDa)

5.22

Isoelectric Point (pI)

55.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Snf7	PF03357	79 - 245	2.5e-44	Snf7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000584)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19830 AT2G19830 AT4G29160 AT4G29160 AT4G29160
fragaria_vesca	FvH4_1g06720 FvH4_1g06720 FvH4_1g06720 FvH4_2g32330 FvH4_2g32330 FvH4_4g20950
malus_domestica	MD02G1072100.v1.1 MD08G1074600.v1.1 MD15G1062300.v1.1 MD15G1201900.v1.1
prunus_persica	Prupe.1G416300_v2.0.a1 Prupe.1G416300_v2.0.a1 Prupe.7G215600_v2.0.a1 Prupe.7G215600_v2.0.a1 Prupe.7G215600_v2.0.a1
pyrus_communis	pycom02g05610 pycom08g06160 pycom15g05890 pycom15g05900 pycom15g17920
rosa_chinensis	RchiOBHm_Chr2g0092461 RchiOBHm_Chr4g0426411 RchiOBHm_Chr4g0426421 RchiOBHm_Chr6g0310361 RchiOBHm_Chr7g0204861 RchiOBHm_Chr7g0204871 RchiOBHm_Chr7g0204891
rosa_laevigata	RLG00000003423 RLG00000003426 RLG00000007295 RLG00000007296 RLG00000010489 RLG00000016312
rosa_multiflora	Rmu_co8485477.1_g000001 Rmu_sc0001361.1_g000025 Rmu_sc0002180.1_g000006 Rmu_sc0002180.1_g000014 Rmu_sc0002180.1_g000015 Rmu_sc0002348.1_g000004 Rmu_sc0007942.1_g000001 Rmu_sc0042068.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149100 Rroxscaffold_3G00252690 Rroxscaffold_7G00158620
rosa_rugosa	Rorug02G0026500 Rorug04G0210700 Rorug04G0211100 Rorug06G0379300 Rorug07G0086400
rosa_samantha	Rh2AG072400 Rh2BG072800 Rh2CG074000 Rh2DG070800 Rh4AG267800 Rh4BG273900 Rh4BG274000 Rh4CG288100 Rh4DG270700 Rh4DG270800 Rh6AG493500 Rh6BG503200 Rh6CG508200 Rh6DG494300 Rh7AG216800 Rh7AG216900 Rh7BG213900 Rh7CG230300 Rh7DG224400 Rh7DG224500 Rh7DG224700
rosa_wichuraiana	Rw2G006030 Rw4G023220 Rw6G042940 Rw7G018790 Rw7G018800 Rw7G018820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	425
AccII	CGCG	1 cut(s)	114
AciI	CCGC	4 cut(s)	114, 190, 353, 501
AclWI	GGATC	4 cut(s)	12, 23, 25, 36
AcoI	YGGCCR	1 cut(s)	37
AcsI	RAATTY	1 cut(s)	412
AcuI	CTGAAG	2 cut(s)	28, 771
AfiI	CCNNNNNNNGG	2 cut(s)	352, 755
AgsI	TTSAA	5 cut(s)	110, 122, 187, 401, 668
AjuI	GAANNNNNNNTTGG	2 cut(s)	411, 443
Alw21I	GWGCWC	1 cut(s)	724
Alw26I	GTCTC	1 cut(s)	373
AlwI	GGATC	4 cut(s)	12, 23, 25, 36
AlwNI	CAGNNNCTG	2 cut(s)	476, 632
AoxI	GGCC	5 cut(s)	37, 216, 513, 525, 657
ApeKI	GCWGC	5 cut(s)	299, 626, 629, 728, 815
ApoI	RAATTY	1 cut(s)	412
AspLEI	GCGC	1 cut(s)	426
AsuHPI	GGTGA	2 cut(s)	58, 83
BalI	TGGCCA	1 cut(s)	39
BamHI	GGATCC	2 cut(s)	17, 28
BarI	GAAGNNNNNNTAC	2 cut(s)	368, 400
BauI	CACGAG	1 cut(s)	715
Bbv12I	GWGCWC	1 cut(s)	724
BbvI	GCAGC	5 cut(s)	311, 638, 641, 740, 802
BccI	CCATC	1 cut(s)	826
BcoDI	GTCTC	1 cut(s)	373
BfaI	CTAG	1 cut(s)	674
BisI	GCNGC	6 cut(s)	300, 354, 627, 630, 729, 816
BlpI	GCTNAGC	1 cut(s)	207
BlsI	GCNGC	6 cut(s)	301, 355, 628, 631, 730, 817
BmiI	GGNNCC	4 cut(s)	19, 30, 165, 499
BmsI	GCATC	2 cut(s)	252, 472
BpmI	CTGGAG	3 cut(s)	287, 689, 717
Bpu1102I	GCTNAGC	1 cut(s)	207
BpuEI	CTTGAG	3 cut(s)	278, 288, 318
BsaXI	ACNNNNNCTCC	4 cut(s)	593, 623, 706, 736
Bsc4I	CCNNNNNNNGG	2 cut(s)	352, 755
Bse1I	ACTGG	2 cut(s)	69, 734
BseGI	GGATG	2 cut(s)	565, 652
BseLI	CCNNNNNNNGG	2 cut(s)	352, 755
BseMII	CTCAG	1 cut(s)	797
BseNI	ACTGG	2 cut(s)	69, 734
BseRI	GAGGAG	3 cut(s)	707, 710, 771
BseXI	GCAGC	5 cut(s)	311, 638, 641, 740, 802
BsgI	GTGCAG	1 cut(s)	645
Bsh1236I	CGCG	1 cut(s)	114
Bsh1285I	CGRYCG	1 cut(s)	171
BshFI	GGCC	5 cut(s)	39, 218, 515, 527, 659
BsiEI	CGRYCG	1 cut(s)	171
BsiHKAI	GWGCWC	1 cut(s)	724
BsiSI	CCGG	1 cut(s)	725
BslI	CCNNNNNNNGG	2 cut(s)	352, 755
BsmAI	GTCTC	1 cut(s)	373
BsmI	GAATGC	1 cut(s)	426
BsnI	GGCC	5 cut(s)	39, 218, 515, 527, 659
Bsp1286I	GDGCHC	1 cut(s)	724
Bsp143I	GATC	6 cut(s)	3, 17, 28, 168, 433, 564
Bsp1720I	GCTNAGC	1 cut(s)	207
BspACI	CCGC	4 cut(s)	114, 190, 353, 501
BspANI	GGCC	5 cut(s)	39, 218, 515, 527, 659
BspCNI	CTCAG	1 cut(s)	796
BspFNI	CGCG	1 cut(s)	114
BspLI	GGNNCC	4 cut(s)	19, 30, 165, 499
BspPI	GGATC	4 cut(s)	12, 23, 25, 36
BsrI	ACTGG	2 cut(s)	69, 734
BssMI	GATC	6 cut(s)	3, 17, 28, 168, 433, 564
BssSI	CACGAG	1 cut(s)	715
Bst2BI	CACGAG	1 cut(s)	715
Bst4CI	ACNGT	3 cut(s)	478, 609, 797
Bst6I	CTCTTC	2 cut(s)	68, 371
BstC8I	GCNNGC	5 cut(s)	37, 711, 757, 761, 813
BstDEI	CTNAG	2 cut(s)	207, 783
BstENI	CCTNNNNNAGG	1 cut(s)	753
BstF5I	GGATG	2 cut(s)	565, 652
BstFNI	CGCG	1 cut(s)	114
BstHHI	GCGC	1 cut(s)	426
BstKTI	GATC	6 cut(s)	6, 20, 31, 171, 436, 567
BstMAI	GTCTC	1 cut(s)	373
BstMBI	GATC	6 cut(s)	3, 17, 28, 168, 433, 564
BstMCI	CGRYCG	1 cut(s)	171
BstMWI	GCNNNNNNNGC	6 cut(s)	611, 706, 719, 728, 824, 833
BstUI	CGCG	1 cut(s)	114
BstV1I	GCAGC	5 cut(s)	311, 638, 641, 740, 802
BstX2I	RGATCY	2 cut(s)	17, 28
BstYI	RGATCY	2 cut(s)	17, 28
BsuRI	GGCC	5 cut(s)	39, 218, 515, 527, 659
BtsCI	GGATG	2 cut(s)	565, 652
BtsIMutI	CAGTG	1 cut(s)	605
Cac8I	GCNNGC	5 cut(s)	37, 711, 757, 761, 813
CaiI	CAGNNNCTG	2 cut(s)	476, 632
CfoI	GCGC	1 cut(s)	426
CspCI	CAANNNNNGTGG	2 cut(s)	517, 552
CviAII	CATG	2 cut(s)	517, 586
DdeI	CTNAG	2 cut(s)	207, 783
DpnI	GATC	6 cut(s)	5, 19, 30, 170, 435, 566
DpnII	GATC	6 cut(s)	3, 17, 28, 168, 433, 564
DraI	TTTAAA	2 cut(s)	136, 369
EaeI	YGGCCR	1 cut(s)	37
Eam1104I	CTCTTC	2 cut(s)	68, 371
EarI	CTCTTC	2 cut(s)	68, 371
Eco57I	CTGAAG	2 cut(s)	28, 771
EcoNI	CCTNNNNNAGG	1 cut(s)	753
EcoT22I	ATGCAT	1 cut(s)	487
FaeI	CATG	2 cut(s)	520, 589
FaiI	YATR	4 cut(s)	518, 587, 739, 741
FalI	AAGNNNNNCTT	2 cut(s)	795, 827
FatI	CATG	2 cut(s)	516, 585
FauI	CCCGC	1 cut(s)	183
Fnu4HI	GCNGC	6 cut(s)	300, 354, 627, 630, 729, 816
FokI	GGATG	2 cut(s)	572, 659
Fsp4HI	GCNGC	6 cut(s)	300, 354, 627, 630, 729, 816
FspBI	CTAG	1 cut(s)	674
FspI	TGCGCA	1 cut(s)	425
GlaI	GCGC	1 cut(s)	425
GluI	GCNGC	6 cut(s)	300, 354, 627, 630, 729, 816
GsuI	CTGGAG	3 cut(s)	287, 689, 717
HaeIII	GGCC	5 cut(s)	39, 218, 515, 527, 659
HapII	CCGG	1 cut(s)	725
HhaI	GCGC	1 cut(s)	426
Hin1II	CATG	2 cut(s)	520, 589
Hin6I	GCGC	1 cut(s)	424
HinP1I	GCGC	1 cut(s)	424
HinfI	GANTC	2 cut(s)	235, 595
HpaII	CCGG	1 cut(s)	725
HphI	GGTGA	2 cut(s)	58, 83
Hpy188I	TCNGA	3 cut(s)	86, 438, 786
Hpy188III	TCNNGA	4 cut(s)	305, 431, 599, 749
HpyAV	CCTTC	7 cut(s)	88, 116, 268, 289, 446, 505, 671
HpyCH4III	ACNGT	3 cut(s)	478, 609, 797
HpyCH4V	TGCA	4 cut(s)	458, 485, 626, 818
HpyF10VI	GCNNNNNNNGC	6 cut(s)	611, 706, 719, 728, 824, 833
HpyF3I	CTNAG	2 cut(s)	207, 783
Hsp92II	CATG	2 cut(s)	520, 589
HspAI	GCGC	1 cut(s)	424
Kzo9I	GATC	6 cut(s)	3, 17, 28, 168, 433, 564
LmnI	GCTCC	5 cut(s)	680, 697, 727, 736, 784
Lsp1109I	GCAGC	5 cut(s)	311, 638, 641, 740, 802
LweI	GCATC	2 cut(s)	252, 472
MaeI	CTAG	1 cut(s)	674
MalI	GATC	6 cut(s)	5, 19, 30, 170, 435, 566
MboI	GATC	6 cut(s)	3, 17, 28, 168, 433, 564
MboII	GAAGA	7 cut(s)	55, 93, 283, 304, 388, 680, 815
MfeI	CAATTG	1 cut(s)	419
MflI	RGATCY	2 cut(s)	17, 28
MhlI	GDGCHC	1 cut(s)	724
MlsI	TGGCCA	1 cut(s)	39
MluCI	AATT	8 cut(s)	242, 326, 396, 412, 419, 534, 650, 686
MluNI	TGGCCA	1 cut(s)	39
MmeI	TCCRAC	1 cut(s)	98
Mox20I	TGGCCA	1 cut(s)	39
Mph1103I	ATGCAT	1 cut(s)	487
MscI	TGGCCA	1 cut(s)	39
MseI	TTAA	4 cut(s)	135, 245, 368, 841
Msp20I	TGGCCA	1 cut(s)	39
MspA1I	CMGCKG	2 cut(s)	503, 632
MspI	CCGG	1 cut(s)	725
MunI	CAATTG	1 cut(s)	419
Mva1269I	GAATGC	1 cut(s)	426
MvnI	CGCG	1 cut(s)	114
MwoI	GCNNNNNNNGC	6 cut(s)	611, 706, 719, 728, 824, 833
NdeII	GATC	6 cut(s)	3, 17, 28, 168, 433, 564
NlaIII	CATG	2 cut(s)	520, 589
NlaIV	GGNNCC	4 cut(s)	19, 30, 165, 499
NmeAIII	GCCGAG	1 cut(s)	685
NsbI	TGCGCA	1 cut(s)	425
NsiI	ATGCAT	1 cut(s)	487
PctI	GAATGC	1 cut(s)	426
PfeI	GAWTC	2 cut(s)	235, 595
PkrI	GCNGC	6 cut(s)	301, 355, 628, 631, 730, 817
Ple19I	CGATCG	1 cut(s)	171
PspN4I	GGNNCC	4 cut(s)	19, 30, 165, 499
PstNI	CAGNNNCTG	2 cut(s)	476, 632
PsuI	RGATCY	2 cut(s)	17, 28
PvuI	CGATCG	1 cut(s)	171
PvuII	CAGCTG	1 cut(s)	632
SaqAI	TTAA	4 cut(s)	135, 245, 368, 841
SatI	GCNGC	6 cut(s)	300, 354, 627, 630, 729, 816
Sau3AI	GATC	6 cut(s)	3, 17, 28, 168, 433, 564
SduI	GDGCHC	1 cut(s)	724
SfaNI	GCATC	2 cut(s)	252, 472
SmlI	CTYRAG	3 cut(s)	257, 303, 333
SmoI	CTYRAG	3 cut(s)	257, 303, 333
Sse9I	AATT	8 cut(s)	242, 326, 396, 412, 419, 534, 650, 686
SsiI	CCGC	4 cut(s)	114, 190, 353, 501
SspI	AATATT	1 cut(s)	125
SspMI	CTAG	1 cut(s)	674
TaaI	ACNGT	3 cut(s)	478, 609, 797
TaqI	TCGA	2 cut(s)	171, 639
TasI	AATT	8 cut(s)	242, 326, 396, 412, 419, 534, 650, 686
TauI	GCSGC	1 cut(s)	356
TfiI	GAWTC	2 cut(s)	235, 595
Tru1I	TTAA	4 cut(s)	135, 245, 368, 841
Tru9I	TTAA	4 cut(s)	135, 245, 368, 841
TscAI	CASTG	1 cut(s)	612
TseI	GCWGC	5 cut(s)	299, 626, 629, 728, 815
TspDTI	ATGAA	5 cut(s)	70, 524, 533, 602, 663
TspGWI	ACGGA	1 cut(s)	10
TspRI	CASTG	1 cut(s)	612
XagI	CCTNNNNNAGG	1 cut(s)	753
XapI	RAATTY	1 cut(s)	412
XspI	CTAG	1 cut(s)	674
Zsp2I	ATGCAT	1 cut(s)	487

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.