RchiOBHm_Chr4g0426421

Belongs to the SNF7 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000584
Physical Location & Seq
Forward (+)
51911527 .. 51912204
678 bp
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UTR
Exon/CDS
Intron
PRQ39547

Sequence Viewer

Length: 678 bp
ATGTTCACCAGGCTAATTGGGAAACCTAAAGCGGATGAATCCTCCGGTGCCCTAACCACCATGTCCTTAGAAAAGTTAACCGAGACACTTGAAGTGCTGGAGCGAAAGGAGAAAGTACTAGAGAGGAAGGCTGCTGTTGAACATGAAAGGGCCAAGGCTTTCTCCAAAGCAAAGAATAAAAGAGCTGCTATTCAGTGTTTGATTAAGAAGAAGAGGTTCGAAGAGCAAATAGAGATACTCGGAAAATCCCAACTGCGACTCCATGATCAGATGATACTGCTAGAAGGTGCGAAAGCTACCACGGAAACTCTAGATGCCTTGAGAACTGGAGCAGCTGCAATGAAGGCAATGCAGAAAGCAACAAAGATAGATGACGTAGACAAGGTCATGGATGAAATTAATGAGCAGATGGAGAACATGAAGCAGATCCAGGAAGCTTTGTCGAATCCGATTGGTGACGGCTTTGATGAGGATGAGTTGGAAGCAGAACTTGAAGAGCTCGAAGCCGCTGAGCTGGAACGAGAACTTCTTCAGCCTGTAACTACAAGCACGTCTACTTCTGCAGCTCCGGTGCAGGTCCCAGCAGGAGTTAGGCAACCCAGTACTCGTCCTGTTCCGGAGAAGCGTAGTGCTGAAGAAGATGAACTGGCTGCTTTGCAGGCTGAGATGGCACTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 ko04217 map04144 map04217
Pfam Domains
Protein Families
Snf7

Protein Analysis

225

Amino Acids

24.97

Weight (kDa)

4.95

Isoelectric Point (pI)

48.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Snf7 PF03357 24 - 187 2.2e-41 Snf7
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000584)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19830 AT2G19830 AT4G29160 AT4G29160 AT4G29160
fragaria_vesca FvH4_1g06720 FvH4_1g06720 FvH4_1g06720 FvH4_2g32330 FvH4_2g32330 FvH4_4g20950
malus_domestica MD02G1072100.v1.1 MD08G1074600.v1.1 MD15G1062300.v1.1 MD15G1201900.v1.1
prunus_persica Prupe.1G416300_v2.0.a1 Prupe.1G416300_v2.0.a1 Prupe.7G215600_v2.0.a1 Prupe.7G215600_v2.0.a1 Prupe.7G215600_v2.0.a1
pyrus_communis pycom02g05610 pycom08g06160 pycom15g05890 pycom15g05900 pycom15g17920
rosa_chinensis RchiOBHm_Chr2g0092461 RchiOBHm_Chr4g0426411 RchiOBHm_Chr4g0426421 RchiOBHm_Chr6g0310361 RchiOBHm_Chr7g0204861 RchiOBHm_Chr7g0204871 RchiOBHm_Chr7g0204891
rosa_laevigata RLG00000003423 RLG00000003426 RLG00000007295 RLG00000007296 RLG00000010489 RLG00000016312
rosa_multiflora Rmu_co8485477.1_g000001 Rmu_sc0001361.1_g000025 Rmu_sc0002180.1_g000006 Rmu_sc0002180.1_g000014 Rmu_sc0002180.1_g000015 Rmu_sc0002348.1_g000004 Rmu_sc0007942.1_g000001 Rmu_sc0042068.1_g000001
rosa_roxburghii Rroxscaffold_2G00149100 Rroxscaffold_3G00252690 Rroxscaffold_7G00158620
rosa_rugosa Rorug02G0026500 Rorug04G0210700 Rorug04G0211100 Rorug06G0379300 Rorug07G0086400
rosa_samantha Rh2AG072400 Rh2BG072800 Rh2CG074000 Rh2DG070800 Rh4AG267800 Rh4BG273900 Rh4BG274000 Rh4CG288100 Rh4DG270700 Rh4DG270800 Rh6AG493500 Rh6BG503200 Rh6CG508200 Rh6DG494300 Rh7AG216800 Rh7AG216900 Rh7BG213900 Rh7CG230300 Rh7DG224400 Rh7DG224500 Rh7DG224700
rosa_wichuraiana Rw2G006030 Rw4G023220 Rw6G042940 Rw7G018790 Rw7G018800 Rw7G018820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 565
AccB1I GGYRCC 1 cut(s) 47
AccI GTMKAC 2 cut(s) 378, 554
AccIII TCCGGA 1 cut(s) 616
AciI CCGC 2 cut(s) 32, 507
AclWI GGATC 1 cut(s) 421
AcuI CTGAAG 2 cut(s) 515, 654
AfaI GTAC 2 cut(s) 117, 604
AgsI TTSAA 3 cut(s) 92, 140, 494
AjiI CACGTC 1 cut(s) 552
AjnI CCWGG 2 cut(s) 8, 429
AluBI AGCT 7 cut(s) 185, 296, 335, 437, 499, 514, 566
AluI AGCT 7 cut(s) 185, 296, 335, 437, 499, 514, 566
Alw21I GWGCWC 1 cut(s) 501
Alw26I GTCTC 1 cut(s) 77
AlwI GGATC 1 cut(s) 421
Aor13HI TCCGGA 1 cut(s) 616
AoxI GGCC 1 cut(s) 150
ApeKI GCWGC 6 cut(s) 131, 185, 332, 335, 563, 650
AseI ATTAAT 1 cut(s) 399
Asp700I GAANNNNTTC 2 cut(s) 215, 528
AspS9I GGNCC 2 cut(s) 150, 577
AsuHPI GGTGA 1 cut(s) 467
AsuII TTCGAA 1 cut(s) 219
AvaII GGWCC 1 cut(s) 577
BaeGI GKGCMC 1 cut(s) 52
BanI GGYRCC 1 cut(s) 47
BanII GRGCYC 1 cut(s) 501
Bbv12I GWGCWC 1 cut(s) 501
BbvI GCAGC 6 cut(s) 118, 172, 322, 344, 575, 637
BccI CCATC 2 cut(s) 403, 661
BceAI ACGGC 1 cut(s) 475
BciT130I CCWGG 2 cut(s) 10, 431
BclI TGATCA 1 cut(s) 265
BcoDI GTCTC 1 cut(s) 77
BfaI CTAG 3 cut(s) 119, 281, 311
BfmI CTRYAG 1 cut(s) 561
BfuAI ACCTGC 1 cut(s) 565
BisI GCNGC 7 cut(s) 132, 186, 333, 336, 507, 564, 651
BlpI GCTNAGC 1 cut(s) 510
BlsI GCNGC 7 cut(s) 133, 187, 334, 337, 508, 565, 652
BmcAI AGTACT 2 cut(s) 117, 604
Bme1390I CCNGG 2 cut(s) 10, 431
Bme18I GGWCC 1 cut(s) 577
BmgBI CACGTC 1 cut(s) 552
BmgT120I GGNCC 2 cut(s) 150, 577
BmiI GGNNCC 2 cut(s) 49, 579
BmrFI CCNGG 2 cut(s) 10, 431
BmrI ACTGGG 1 cut(s) 594
BmsI GCATC 1 cut(s) 304
BmuI ACTGGG 1 cut(s) 594
BpmI CTGGAG 2 cut(s) 119, 348
Bpu1102I GCTNAGC 1 cut(s) 510
Bpu14I TTCGAA 1 cut(s) 219
BpuEI CTTGAG 1 cut(s) 340
BsaJI CCNNGG 2 cut(s) 153, 300
BsaWI WCCGGW 3 cut(s) 44, 568, 616
BsaXI ACNNNNNCTCC 2 cut(s) 243, 273
Bse1I ACTGG 3 cut(s) 331, 600, 651
Bse3DI GCAATG 2 cut(s) 345, 354
BseAI TCCGGA 1 cut(s) 616
BseBI CCWGG 2 cut(s) 10, 431
BseDI CCNNGG 2 cut(s) 153, 300
BseGI GGATG 3 cut(s) 40, 397, 478
BseMI GCAATG 2 cut(s) 345, 354
BseMII CTCAG 2 cut(s) 501, 654
BseNI ACTGG 3 cut(s) 331, 600, 651
BseSI GKGCMC 1 cut(s) 52
BseXI GCAGC 6 cut(s) 118, 172, 322, 344, 575, 637
BseYI CCCAGC 1 cut(s) 580
BsgI GTGCAG 1 cut(s) 593
BshFI GGCC 1 cut(s) 152
BshNI GGYRCC 1 cut(s) 47
BsiHKAI GWGCWC 1 cut(s) 501
BsiSI CCGG 3 cut(s) 45, 569, 617
BslFI GGGAC 1 cut(s) 563
BsmAI GTCTC 1 cut(s) 77
BsmFI GGGAC 1 cut(s) 563
BsnI GGCC 1 cut(s) 152
Bsp119I TTCGAA 1 cut(s) 219
Bsp1286I GDGCHC 2 cut(s) 52, 501
Bsp13I TCCGGA 1 cut(s) 616
Bsp143I GATC 2 cut(s) 265, 426
Bsp1720I GCTNAGC 1 cut(s) 510
BspACI CCGC 2 cut(s) 32, 507
BspANI GGCC 1 cut(s) 152
BspCNI CTCAG 2 cut(s) 502, 655
BspEI TCCGGA 1 cut(s) 616
BspLI GGNNCC 2 cut(s) 49, 579
BspMAI CTGCAG 1 cut(s) 565
BspMI ACCTGC 1 cut(s) 565
BspPI GGATC 1 cut(s) 421
BspQI GCTCTTC 2 cut(s) 216, 489
BspT104I TTCGAA 1 cut(s) 219
BspT107I GGYRCC 1 cut(s) 47
BsrDI GCAATG 2 cut(s) 345, 354
BsrI ACTGG 3 cut(s) 331, 600, 651
BssECI CCNNGG 2 cut(s) 153, 300
BssMI GATC 2 cut(s) 265, 426
BssT1I CCWWGG 1 cut(s) 153
Bst2UI CCWGG 2 cut(s) 10, 431
Bst6I CTCTTC 3 cut(s) 206, 216, 489
BstBI TTCGAA 1 cut(s) 219
BstC8I GCNNGC 1 cut(s) 660
BstDEI CTNAG 3 cut(s) 67, 510, 663
BstDSI CCRYGG 1 cut(s) 300
BstF5I GGATG 3 cut(s) 40, 397, 478
BstKTI GATC 2 cut(s) 268, 429
BstMAI GTCTC 1 cut(s) 77
BstMBI GATC 2 cut(s) 265, 426
BstMWI GCNNNNNNNGC 3 cut(s) 344, 659, 668
BstNI CCWGG 2 cut(s) 10, 431
BstSCI CCNGG 2 cut(s) 8, 429
BstSFI CTRYAG 1 cut(s) 561
BstSLI GKGCMC 1 cut(s) 52
BstV1I GCAGC 6 cut(s) 118, 172, 322, 344, 575, 637
BstX2I RGATCY 1 cut(s) 426
BstYI RGATCY 1 cut(s) 426
BsuRI GGCC 1 cut(s) 152
BtgI CCRYGG 1 cut(s) 300
BtrI CACGTC 1 cut(s) 552
BtsCI GGATG 3 cut(s) 40, 397, 478
BtsIMutI CAGTG 1 cut(s) 200
BveI ACCTGC 1 cut(s) 565
Cac8I GCNNGC 1 cut(s) 660
Cfr13I GGNCC 2 cut(s) 150, 577
Csp6I GTAC 2 cut(s) 116, 603
CviAII CATG 5 cut(s) 61, 143, 263, 388, 418
CviQI GTAC 2 cut(s) 116, 603
DdeI CTNAG 3 cut(s) 67, 510, 663
DpnI GATC 2 cut(s) 267, 428
DpnII GATC 2 cut(s) 265, 426
Eam1104I CTCTTC 3 cut(s) 206, 216, 489
EarI CTCTTC 3 cut(s) 206, 216, 489
Ecl136II GAGCTC 1 cut(s) 499
Eco130I CCWWGG 1 cut(s) 153
Eco24I GRGCYC 1 cut(s) 501
Eco47I GGWCC 1 cut(s) 577
Eco53kI GAGCTC 1 cut(s) 499
Eco57I CTGAAG 2 cut(s) 515, 654
EcoICRI GAGCTC 1 cut(s) 499
EcoO109I RGGNCCY 1 cut(s) 577
EcoRII CCWGG 2 cut(s) 8, 429
EcoT14I CCWWGG 1 cut(s) 153
EcoT38I GRGCYC 1 cut(s) 501
ErhI CCWWGG 1 cut(s) 153
FaeI CATG 5 cut(s) 64, 146, 266, 391, 421
FaiI YATR 6 cut(s) 62, 144, 264, 389, 419, 676
FalI AAGNNNNNCTT 2 cut(s) 474, 506
FaqI GGGAC 1 cut(s) 563
FatI CATG 5 cut(s) 60, 142, 262, 387, 417
FbaI TGATCA 1 cut(s) 265
FblI GTMKAC 2 cut(s) 378, 554
Fnu4HI GCNGC 7 cut(s) 132, 186, 333, 336, 507, 564, 651
FokI GGATG 3 cut(s) 47, 404, 485
FriOI GRGCYC 1 cut(s) 501
Fsp4HI GCNGC 7 cut(s) 132, 186, 333, 336, 507, 564, 651
FspBI CTAG 3 cut(s) 119, 281, 311
GluI GCNGC 7 cut(s) 132, 186, 333, 336, 507, 564, 651
GsaI CCCAGC 1 cut(s) 584
GsuI CTGGAG 2 cut(s) 119, 348
HaeIII GGCC 1 cut(s) 152
HapII CCGG 3 cut(s) 45, 569, 617
Hin1II CATG 5 cut(s) 64, 146, 266, 391, 421
HincII GTYRAC 1 cut(s) 78
HindII GTYRAC 1 cut(s) 78
HindIII AAGCTT 1 cut(s) 435
HinfI GANTC 3 cut(s) 38, 258, 445
HpaI GTTAAC 1 cut(s) 78
HpaII CCGG 3 cut(s) 45, 569, 617
HphI GGTGA 1 cut(s) 467
Hpy166II GTNNAC 4 cut(s) 6, 78, 379, 555
Hpy188I TCNGA 3 cut(s) 242, 270, 450
Hpy188III TCNNGA 2 cut(s) 311, 617
Hpy8I GTNNAC 4 cut(s) 6, 78, 379, 555
HpyAV CCTTC 3 cut(s) 121, 278, 337
HpyCH4IV ACGT 2 cut(s) 375, 551
HpyCH4V TGCA 5 cut(s) 338, 352, 563, 574, 658
HpyF10VI GCNNNNNNNGC 3 cut(s) 344, 659, 668
HpyF3I CTNAG 3 cut(s) 67, 510, 663
HpySE526I ACGT 2 cut(s) 375, 551
Hsp92II CATG 5 cut(s) 64, 146, 266, 391, 421
Kpn2I TCCGGA 1 cut(s) 616
Ksp22I TGATCA 1 cut(s) 265
KspAI GTTAAC 1 cut(s) 78
Kzo9I GATC 2 cut(s) 265, 426
LguI GCTCTTC 2 cut(s) 216, 489
LmnI GCTCC 3 cut(s) 100, 329, 571
Lsp1109I GCAGC 6 cut(s) 118, 172, 322, 344, 575, 637
LweI GCATC 1 cut(s) 304
MaeI CTAG 3 cut(s) 119, 281, 311
MaeII ACGT 2 cut(s) 375, 551
MaeIII GTNAC 2 cut(s) 455, 538
MalI GATC 2 cut(s) 267, 428
MboI GATC 2 cut(s) 265, 426
MboII GAAGA 7 cut(s) 220, 223, 233, 506, 521, 647, 650
MflI RGATCY 1 cut(s) 426
MhlI GDGCHC 2 cut(s) 52, 501
MluCI AATT 2 cut(s) 15, 396
MlyI GAGTC 1 cut(s) 252
MmeI TCCRAC 1 cut(s) 459
MnlI CCTC 4 cut(s) 52, 117, 207, 463
MroI TCCGGA 1 cut(s) 616
MroXI GAANNNNTTC 2 cut(s) 215, 528
MseI TTAA 3 cut(s) 77, 204, 399
MspA1I CMGCKG 2 cut(s) 335, 509
MspI CCGG 3 cut(s) 45, 569, 617
MspR9I CCNGG 2 cut(s) 10, 431
MvaI CCWGG 2 cut(s) 10, 431
MwoI GCNNNNNNNGC 3 cut(s) 344, 659, 668
NdeII GATC 2 cut(s) 265, 426
NlaIII CATG 5 cut(s) 64, 146, 266, 391, 421
NlaIV GGNNCC 2 cut(s) 49, 579
NmuCI GTSAC 1 cut(s) 455
NspV TTCGAA 1 cut(s) 219
PciSI GCTCTTC 2 cut(s) 216, 489
PdmI GAANNNNTTC 2 cut(s) 215, 528
PfeI GAWTC 2 cut(s) 38, 445
PflFI GACNNNGTC 1 cut(s) 383
PfoI TCCNGGA 1 cut(s) 429
PkrI GCNGC 7 cut(s) 133, 187, 334, 337, 508, 565, 652
PleI GAGTC 1 cut(s) 252
PpsI GAGTC 1 cut(s) 252
PpuMI RGGWCCY 1 cut(s) 577
PshBI ATTAAT 1 cut(s) 399
Psp124BI GAGCTC 1 cut(s) 501
Psp5II RGGWCCY 1 cut(s) 577
Psp6I CCWGG 2 cut(s) 8, 429
PspFI CCCAGC 1 cut(s) 580
PspGI CCWGG 2 cut(s) 8, 429
PspN4I GGNNCC 2 cut(s) 49, 579
PspPI GGNCC 2 cut(s) 150, 577
PspPPI RGGWCCY 1 cut(s) 577
PstI CTGCAG 1 cut(s) 565
PsuI RGATCY 1 cut(s) 426
PsyI GACNNNGTC 1 cut(s) 383
PvuII CAGCTG 1 cut(s) 335
RsaI GTAC 2 cut(s) 117, 604
RsaNI GTAC 2 cut(s) 116, 603
SacI GAGCTC 1 cut(s) 501
SapI GCTCTTC 2 cut(s) 216, 489
SaqAI TTAA 3 cut(s) 77, 204, 399
SatI GCNGC 7 cut(s) 132, 186, 333, 336, 507, 564, 651
Sau3AI GATC 2 cut(s) 265, 426
Sau96I GGNCC 2 cut(s) 150, 577
ScaI AGTACT 2 cut(s) 117, 604
SchI GAGTC 1 cut(s) 252
ScrFI CCNGG 2 cut(s) 10, 431
SduI GDGCHC 2 cut(s) 52, 501
SfaNI GCATC 1 cut(s) 304
SfcI CTRYAG 1 cut(s) 561
SfuI TTCGAA 1 cut(s) 219
SinI GGWCC 1 cut(s) 577
SmlI CTYRAG 1 cut(s) 319
SmoI CTYRAG 1 cut(s) 319
Sse9I AATT 2 cut(s) 15, 396
SsiI CCGC 2 cut(s) 32, 507
SspMI CTAG 3 cut(s) 119, 281, 311
SstI GAGCTC 1 cut(s) 501
StyD4I CCNGG 2 cut(s) 8, 429
StyI CCWWGG 1 cut(s) 153
TaiI ACGT 2 cut(s) 378, 554
TaqI TCGA 3 cut(s) 219, 443, 501
TasI AATT 2 cut(s) 15, 396
TatI WGTACW 2 cut(s) 115, 602
TauI GCSGC 1 cut(s) 509
TfiI GAWTC 2 cut(s) 38, 445
Tru1I TTAA 3 cut(s) 77, 204, 399
Tru9I TTAA 3 cut(s) 77, 204, 399
TscAI CASTG 1 cut(s) 200
TseFI GTSAC 1 cut(s) 455
TseI GCWGC 6 cut(s) 131, 185, 332, 335, 563, 650
Tsp45I GTSAC 1 cut(s) 455
TspDTI ATGAA 6 cut(s) 51, 159, 356, 408, 434, 657
TspGWI ACGGA 1 cut(s) 317
TspRI CASTG 1 cut(s) 200
Tth111I GACNNNGTC 1 cut(s) 383
VpaK11BI GGWCC 1 cut(s) 577
VspI ATTAAT 1 cut(s) 399
XbaI TCTAGA 1 cut(s) 310
XmiI GTMKAC 2 cut(s) 378, 554
XmnI GAANNNNTTC 2 cut(s) 215, 528
XspI CTAG 3 cut(s) 119, 281, 311
ZrmI AGTACT 2 cut(s) 117, 604
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.