Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001361.1

Orthogroup ID

OG0000584

Physical Location & Seq

Genomic Coordinates Reverse (-)

105402 .. 106719

Gene Structure 1318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001361.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

atgtttcgcaaagtgtttgggaaaaccaagcaggaagctaatcctctgccaaccttacacaaattaaatgagacacttgagatgctggagaagaaggagaagctccttgggaagaaggcagctgcagaggttgagaaggcgaagcaatttacgcaagcaaaaaaccgaaattgtgggtgtagtgccacaatctgggtcatcgaagcaggttggtttgggacttgttcagcaaatctgattgtcggaggtctgggtacggtggctattgctcttaagacactgaaatctcgttcgtcgttcttcgacgagtctggggatcggcgcaggagggtcgggtgggcaggcgcgagtgttccgggtgggttgctgcagcagcgatgggtggaggcgggttggctgctggcgcggggatgttgctgtcgctggatcgagatggaggcccgtgatgtagactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000815 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0006810 GO:0006900 GO:0006996 GO:0007032 GO:0008150 GO:0009987 GO:0010008 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0036452 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0061024 GO:0070676 GO:0071840 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

151

Amino Acids

16.76

Weight (kDa)

9.51

Isoelectric Point (pI)

47.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000584)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19830 AT2G19830 AT4G29160 AT4G29160 AT4G29160
fragaria_vesca	FvH4_1g06720 FvH4_1g06720 FvH4_1g06720 FvH4_2g32330 FvH4_2g32330 FvH4_4g20950
malus_domestica	MD02G1072100.v1.1 MD08G1074600.v1.1 MD15G1062300.v1.1 MD15G1201900.v1.1
prunus_persica	Prupe.1G416300_v2.0.a1 Prupe.1G416300_v2.0.a1 Prupe.7G215600_v2.0.a1 Prupe.7G215600_v2.0.a1 Prupe.7G215600_v2.0.a1
pyrus_communis	pycom02g05610 pycom08g06160 pycom15g05890 pycom15g05900 pycom15g17920
rosa_chinensis	RchiOBHm_Chr2g0092461 RchiOBHm_Chr4g0426411 RchiOBHm_Chr4g0426421 RchiOBHm_Chr6g0310361 RchiOBHm_Chr7g0204861 RchiOBHm_Chr7g0204871 RchiOBHm_Chr7g0204891
rosa_laevigata	RLG00000003423 RLG00000003426 RLG00000007295 RLG00000007296 RLG00000010489 RLG00000016312
rosa_multiflora	Rmu_co8485477.1_g000001 Rmu_sc0001361.1_g000025 Rmu_sc0002180.1_g000006 Rmu_sc0002180.1_g000014 Rmu_sc0002180.1_g000015 Rmu_sc0002348.1_g000004 Rmu_sc0007942.1_g000001 Rmu_sc0042068.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149100 Rroxscaffold_3G00252690 Rroxscaffold_7G00158620
rosa_rugosa	Rorug02G0026500 Rorug04G0210700 Rorug04G0211100 Rorug06G0379300 Rorug07G0086400
rosa_samantha	Rh2AG072400 Rh2BG072800 Rh2CG074000 Rh2DG070800 Rh4AG267800 Rh4BG273900 Rh4BG274000 Rh4CG288100 Rh4DG270700 Rh4DG270800 Rh6AG493500 Rh6BG503200 Rh6CG508200 Rh6DG494300 Rh7AG216800 Rh7AG216900 Rh7BG213900 Rh7CG230300 Rh7DG224400 Rh7DG224500 Rh7DG224700
rosa_wichuraiana	Rw2G006030 Rw4G023220 Rw6G042940 Rw7G018790 Rw7G018800 Rw7G018820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	197
AccB7I	CCANNNNNTGG	1 cut(s)	192
AccI	GTMKAC	1 cut(s)	450
AccII	CGCG	2 cut(s)	347, 406
AciI	CCGC	2 cut(s)	389, 406
AclWI	GGATC	2 cut(s)	324, 434
AfaI	GTAC	1 cut(s)	256
AfiI	CCNNNNNNNGG	1 cut(s)	192
AflII	CTTAAG	1 cut(s)	272
AluBI	AGCT	3 cut(s)	38, 103, 122
AluI	AGCT	3 cut(s)	38, 103, 122
Alw26I	GTCTC	1 cut(s)	65
AlwI	GGATC	2 cut(s)	324, 434
AoxI	GGCC	1 cut(s)	438
ApeKI	GCWGC	6 cut(s)	119, 122, 367, 370, 373, 397
AspLEI	GCGC	3 cut(s)	324, 347, 406
AspS9I	GGNCC	1 cut(s)	439
AsuC2I	CCSGG	1 cut(s)	357
BbvI	GCAGC	6 cut(s)	109, 131, 354, 382, 384, 385
BccI	CCATC	2 cut(s)	372, 427
BcgI	CGANNNNNNTGC	2 cut(s)	313, 347
BcnI	CCSGG	1 cut(s)	357
BcoDI	GTCTC	1 cut(s)	65
BfaI	CTAG	1 cut(s)	454
BfmI	CTRYAG	2 cut(s)	123, 368
BfrI	CTTAAG	1 cut(s)	272
BfuAI	ACCTGC	1 cut(s)	197
BisI	GCNGC	6 cut(s)	120, 123, 368, 371, 374, 398
BlsI	GCNGC	6 cut(s)	121, 124, 369, 372, 375, 399
Bme1390I	CCNGG	1 cut(s)	357
BmgT120I	GGNCC	1 cut(s)	439
BmrFI	CCNGG	1 cut(s)	357
BmsI	GCATC	1 cut(s)	72
BpmI	CTGGAG	1 cut(s)	107
BpuEI	CTTGAG	1 cut(s)	98
BpuMI	CCSGG	1 cut(s)	357
BsaJI	CCNNGG	1 cut(s)	106
Bsc4I	CCNNNNNNNGG	1 cut(s)	192
BseDI	CCNNGG	1 cut(s)	106
BseGI	GGATG	1 cut(s)	416
BseLI	CCNNNNNNNGG	1 cut(s)	192
BseXI	GCAGC	6 cut(s)	109, 131, 354, 382, 384, 385
Bsh1236I	CGCG	2 cut(s)	347, 406
BshFI	GGCC	1 cut(s)	440
BsiSI	CCGG	1 cut(s)	356
BslFI	GGGAC	1 cut(s)	232
BslI	CCNNNNNNNGG	1 cut(s)	192
BsmAI	GTCTC	1 cut(s)	65
BsmFI	GGGAC	1 cut(s)	232
BsnI	GGCC	1 cut(s)	440
Bsp143I	GATC	2 cut(s)	316, 426
BspACI	CCGC	2 cut(s)	389, 406
BspANI	GGCC	1 cut(s)	440
BspFNI	CGCG	2 cut(s)	347, 406
BspMAI	CTGCAG	2 cut(s)	127, 372
BspMI	ACCTGC	1 cut(s)	197
BspPI	GGATC	2 cut(s)	324, 434
BspTI	CTTAAG	1 cut(s)	272
BssECI	CCNNGG	1 cut(s)	106
BssMI	GATC	2 cut(s)	316, 426
BssT1I	CCWWGG	1 cut(s)	106
Bst4CI	ACNGT	1 cut(s)	259
BstAFI	CTTAAG	1 cut(s)	272
BstC8I	GCNNGC	3 cut(s)	156, 343, 402
BstF5I	GGATG	1 cut(s)	416
BstFNI	CGCG	2 cut(s)	347, 406
BstHHI	GCGC	3 cut(s)	324, 347, 406
BstKTI	GATC	2 cut(s)	319, 429
BstMAI	GTCTC	1 cut(s)	65
BstMBI	GATC	2 cut(s)	316, 426
BstMWI	GCNNNNNNNGC	3 cut(s)	151, 373, 403
BstSCI	CCNGG	1 cut(s)	355
BstSFI	CTRYAG	2 cut(s)	123, 368
BstUI	CGCG	2 cut(s)	347, 406
BstV1I	GCAGC	6 cut(s)	109, 131, 354, 382, 384, 385
BsuRI	GGCC	1 cut(s)	440
BtgZI	GCGATG	1 cut(s)	391
BtsCI	GGATG	1 cut(s)	416
BtsIMutI	CAGTG	1 cut(s)	278
BveI	ACCTGC	1 cut(s)	197
Cac8I	GCNNGC	3 cut(s)	156, 343, 402
CfoI	GCGC	3 cut(s)	324, 347, 406
Cfr13I	GGNCC	1 cut(s)	439
Csp6I	GTAC	1 cut(s)	255
CviJI	RGCY	6 cut(s)	38, 103, 122, 263, 397, 440
CviKI_1	RGCY	6 cut(s)	38, 103, 122, 263, 397, 440
CviQI	GTAC	1 cut(s)	255
DpnI	GATC	2 cut(s)	318, 428
DpnII	GATC	2 cut(s)	316, 426
Eco130I	CCWWGG	1 cut(s)	106
EcoT14I	CCWWGG	1 cut(s)	106
ErhI	CCWWGG	1 cut(s)	106
FaqI	GGGAC	1 cut(s)	232
FauI	CCCGC	2 cut(s)	382, 399
FblI	GTMKAC	1 cut(s)	450
Fnu4HI	GCNGC	6 cut(s)	120, 123, 368, 371, 374, 398
FokI	GGATG	1 cut(s)	423
Fsp4HI	GCNGC	6 cut(s)	120, 123, 368, 371, 374, 398
FspBI	CTAG	1 cut(s)	454
GlaI	GCGC	3 cut(s)	323, 346, 405
GluI	GCNGC	6 cut(s)	120, 123, 368, 371, 374, 398
GsuI	CTGGAG	1 cut(s)	107
HaeIII	GGCC	1 cut(s)	440
HapII	CCGG	1 cut(s)	356
HhaI	GCGC	3 cut(s)	324, 347, 406
Hin6I	GCGC	3 cut(s)	322, 345, 404
HinP1I	GCGC	3 cut(s)	322, 345, 404
HinfI	GANTC	1 cut(s)	308
HpaII	CCGG	1 cut(s)	356
Hpy166II	GTNNAC	1 cut(s)	451
Hpy188I	TCNGA	2 cut(s)	237, 245
Hpy188III	TCNNGA	1 cut(s)	430
Hpy8I	GTNNAC	1 cut(s)	451
Hpy99I	CGWCG	2 cut(s)	298, 308
HpyAV	CCTTC	3 cut(s)	88, 109, 130
HpyCH4III	ACNGT	1 cut(s)	259
HpyCH4V	TGCA	2 cut(s)	125, 370
HpyF10VI	GCNNNNNNNGC	3 cut(s)	151, 373, 403
HspAI	GCGC	3 cut(s)	322, 345, 404
Kzo9I	GATC	2 cut(s)	316, 426
LmnI	GCTCC	1 cut(s)	108
Lsp1109I	GCAGC	6 cut(s)	109, 131, 354, 382, 384, 385
LweI	GCATC	1 cut(s)	72
MaeI	CTAG	1 cut(s)	454
MalI	GATC	2 cut(s)	318, 428
MboI	GATC	2 cut(s)	316, 426
MboII	GAAGA	3 cut(s)	103, 124, 292
MluCI	AATT	3 cut(s)	62, 146, 169
MlyI	GAGTC	1 cut(s)	317
MmeI	TCCRAC	1 cut(s)	223
MnlI	CCTC	6 cut(s)	54, 121, 239, 321, 379, 430
MseI	TTAA	2 cut(s)	65, 273
MspA1I	CMGCKG	1 cut(s)	122
MspCI	CTTAAG	1 cut(s)	272
MspI	CCGG	1 cut(s)	356
MspR9I	CCNGG	1 cut(s)	357
MvnI	CGCG	2 cut(s)	347, 406
MwoI	GCNNNNNNNGC	3 cut(s)	151, 373, 403
NciI	CCSGG	1 cut(s)	357
NdeII	GATC	2 cut(s)	316, 426
PflMI	CCANNNNNTGG	1 cut(s)	192
PkrI	GCNGC	6 cut(s)	121, 124, 369, 372, 375, 399
PleI	GAGTC	1 cut(s)	316
PpsI	GAGTC	1 cut(s)	316
PspPI	GGNCC	1 cut(s)	439
PstI	CTGCAG	2 cut(s)	127, 372
PvuII	CAGCTG	1 cut(s)	122
RsaI	GTAC	1 cut(s)	256
RsaNI	GTAC	1 cut(s)	255
SaqAI	TTAA	2 cut(s)	65, 273
SatI	GCNGC	6 cut(s)	120, 123, 368, 371, 374, 398
Sau3AI	GATC	2 cut(s)	316, 426
Sau96I	GGNCC	1 cut(s)	439
SchI	GAGTC	1 cut(s)	317
ScrFI	CCNGG	1 cut(s)	357
SetI	ASST	7 cut(s)	40, 56, 105, 124, 132, 211, 250
SfaNI	GCATC	1 cut(s)	72
SfcI	CTRYAG	2 cut(s)	123, 368
SmlI	CTYRAG	2 cut(s)	77, 272
SmoI	CTYRAG	2 cut(s)	77, 272
Sse9I	AATT	3 cut(s)	62, 146, 169
SsiI	CCGC	2 cut(s)	389, 406
SspMI	CTAG	1 cut(s)	454
StyD4I	CCNGG	1 cut(s)	355
StyI	CCWWGG	1 cut(s)	106
TaaI	ACNGT	1 cut(s)	259
TaqI	TCGA	3 cut(s)	201, 303, 429
TasI	AATT	3 cut(s)	62, 146, 169
Tru1I	TTAA	2 cut(s)	65, 273
Tru9I	TTAA	2 cut(s)	65, 273
TscAI	CASTG	1 cut(s)	285
TseI	GCWGC	6 cut(s)	119, 122, 367, 370, 373, 397
TspRI	CASTG	1 cut(s)	285
Van91I	CCANNNNNTGG	1 cut(s)	192
Vha464I	CTTAAG	1 cut(s)	272
XmiI	GTMKAC	1 cut(s)	450
XspI	CTAG	1 cut(s)	454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.