Rw4G023220

Belongs to the SNF7 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0000584
Physical Location & Seq
Forward (+)
48784191 .. 48786451
2261 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G023220.1

Sequence Viewer

Length: 753 bp
ATGCCTCCAACACCTCATGTAGCCACACACTCGTCGGTGGTGAGATGGGGGGTCGATAATCGTAGAGAACCAACCATGTTCACCAGGCTAATTGGGAAACCTAAAGCGGATGAATCCTCCGGTGCCCTAACCACCATGTCCTTAGAAAAGTTAACCGAGACACTTGAAGTGCTGGAACGAAAGGAGAAAGTACTAGAGAGGAAGGCTGCTGTTGAACATGAAAGGGCCAAGGCTTTCTCCAAAGCAAAGAATAAAAGAGCTGCTATTCAGTGTTTGATTAAGAAGAAGAGGTTCGAAGAGCAAATAGAGATACTGGGAAACTCCCAACTGCGACTGCATGATCAGATGATACTGCTAGAAGGTGCGAAAGCTACCACGGAAACTCTAGATGCCTTGAGCACTGGAGCAGCTGCAATGAAGGCAATGCAGAAAGCAACAAAGACAGATGACGTAGACAAGGTCATGGATGAAATTAATGAGCAGATGGAGAACATGAAGCAGATCCAGGAAGCTTTGTCGAATCCGATTGGTGACGGCTTTGATGAGGATGAGTTGGAAGCAGAACTTGAAGAGCTCGAAGCCGCTGAGCTGGAACGAGAACTTCTTCAGCCTGTAACTACAAGCACGTCTACTTCTGCAGCTCCGGTGCAGGTCCCAGCAGGAGTTAGGCAACCCAGTACTCGTCCTGTTCCGGAGAAGCGTAGTGCTGAAGAAGATGAACTGGCTGCTTTGCAGGCTGAGATGGCACTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 ko04217 map04144 map04217
Pfam Domains
Protein Families
Snf7

Protein Analysis

250

Amino Acids

27.69

Weight (kDa)

5.02

Isoelectric Point (pI)

51.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Snf7 PF03357 49 - 211 2.2e-40 Snf7
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000584)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19830 AT2G19830 AT4G29160 AT4G29160 AT4G29160
fragaria_vesca FvH4_1g06720 FvH4_1g06720 FvH4_1g06720 FvH4_2g32330 FvH4_2g32330 FvH4_4g20950
malus_domestica MD02G1072100.v1.1 MD08G1074600.v1.1 MD15G1062300.v1.1 MD15G1201900.v1.1
prunus_persica Prupe.1G416300_v2.0.a1 Prupe.1G416300_v2.0.a1 Prupe.7G215600_v2.0.a1 Prupe.7G215600_v2.0.a1 Prupe.7G215600_v2.0.a1
pyrus_communis pycom02g05610 pycom08g06160 pycom15g05890 pycom15g05900 pycom15g17920
rosa_chinensis RchiOBHm_Chr2g0092461 RchiOBHm_Chr4g0426411 RchiOBHm_Chr4g0426421 RchiOBHm_Chr6g0310361 RchiOBHm_Chr7g0204861 RchiOBHm_Chr7g0204871 RchiOBHm_Chr7g0204891
rosa_laevigata RLG00000003423 RLG00000003426 RLG00000007295 RLG00000007296 RLG00000010489 RLG00000016312
rosa_multiflora Rmu_co8485477.1_g000001 Rmu_sc0001361.1_g000025 Rmu_sc0002180.1_g000006 Rmu_sc0002180.1_g000014 Rmu_sc0002180.1_g000015 Rmu_sc0002348.1_g000004 Rmu_sc0007942.1_g000001 Rmu_sc0042068.1_g000001
rosa_roxburghii Rroxscaffold_2G00149100 Rroxscaffold_3G00252690 Rroxscaffold_7G00158620
rosa_rugosa Rorug02G0026500 Rorug04G0210700 Rorug04G0211100 Rorug06G0379300 Rorug07G0086400
rosa_samantha Rh2AG072400 Rh2BG072800 Rh2CG074000 Rh2DG070800 Rh4AG267800 Rh4BG273900 Rh4BG274000 Rh4CG288100 Rh4DG270700 Rh4DG270800 Rh6AG493500 Rh6BG503200 Rh6CG508200 Rh6DG494300 Rh7AG216800 Rh7AG216900 Rh7BG213900 Rh7CG230300 Rh7DG224400 Rh7DG224500 Rh7DG224700
rosa_wichuraiana Rw2G006030 Rw4G023220 Rw6G042940 Rw7G018790 Rw7G018800 Rw7G018820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 640
AccB1I GGYRCC 1 cut(s) 122
AccI GTMKAC 2 cut(s) 453, 629
AccIII TCCGGA 1 cut(s) 691
AciI CCGC 2 cut(s) 107, 582
AclWI GGATC 1 cut(s) 496
AcuI CTGAAG 2 cut(s) 590, 729
AfaI GTAC 2 cut(s) 192, 679
AgsI TTSAA 3 cut(s) 167, 215, 569
AjiI CACGTC 1 cut(s) 627
AjnI CCWGG 2 cut(s) 83, 504
AluBI AGCT 7 cut(s) 260, 371, 410, 512, 574, 589, 641
AluI AGCT 7 cut(s) 260, 371, 410, 512, 574, 589, 641
Alw21I GWGCWC 2 cut(s) 401, 576
Alw26I GTCTC 1 cut(s) 152
AlwI GGATC 1 cut(s) 496
Aor13HI TCCGGA 1 cut(s) 691
AoxI GGCC 1 cut(s) 225
ApeKI GCWGC 6 cut(s) 206, 260, 407, 410, 638, 725
AseI ATTAAT 1 cut(s) 474
Asp700I GAANNNNTTC 2 cut(s) 290, 603
AspS9I GGNCC 2 cut(s) 225, 652
AsuHPI GGTGA 3 cut(s) 52, 73, 542
AsuII TTCGAA 1 cut(s) 294
AvaII GGWCC 1 cut(s) 652
BaeGI GKGCMC 1 cut(s) 127
BanI GGYRCC 1 cut(s) 122
BanII GRGCYC 1 cut(s) 576
Bbv12I GWGCWC 2 cut(s) 401, 576
BbvI GCAGC 6 cut(s) 193, 247, 397, 419, 650, 712
BccI CCATC 3 cut(s) 39, 478, 736
BceAI ACGGC 1 cut(s) 550
BciT130I CCWGG 2 cut(s) 85, 506
BclI TGATCA 1 cut(s) 340
BcoDI GTCTC 1 cut(s) 152
BfaI CTAG 3 cut(s) 194, 356, 386
BfmI CTRYAG 1 cut(s) 636
BfuAI ACCTGC 1 cut(s) 640
BisI GCNGC 7 cut(s) 207, 261, 408, 411, 582, 639, 726
BlpI GCTNAGC 1 cut(s) 585
BlsI GCNGC 7 cut(s) 208, 262, 409, 412, 583, 640, 727
BmcAI AGTACT 2 cut(s) 192, 679
Bme1390I CCNGG 2 cut(s) 85, 506
Bme18I GGWCC 1 cut(s) 652
BmgBI CACGTC 1 cut(s) 627
BmgT120I GGNCC 2 cut(s) 225, 652
BmiI GGNNCC 2 cut(s) 124, 654
BmrFI CCNGG 2 cut(s) 85, 506
BmrI ACTGGG 2 cut(s) 323, 669
BmsI GCATC 1 cut(s) 379
BmuI ACTGGG 2 cut(s) 323, 669
BpmI CTGGAG 1 cut(s) 423
Bpu1102I GCTNAGC 1 cut(s) 585
Bpu14I TTCGAA 1 cut(s) 294
BpuEI CTTGAG 1 cut(s) 415
BsaJI CCNNGG 2 cut(s) 228, 375
BsaWI WCCGGW 3 cut(s) 119, 643, 691
Bse1I ACTGG 4 cut(s) 318, 406, 675, 726
Bse3DI GCAATG 2 cut(s) 420, 429
BseAI TCCGGA 1 cut(s) 691
BseBI CCWGG 2 cut(s) 85, 506
BseDI CCNNGG 2 cut(s) 228, 375
BseGI GGATG 3 cut(s) 115, 472, 553
BseMI GCAATG 2 cut(s) 420, 429
BseMII CTCAG 2 cut(s) 576, 729
BseNI ACTGG 4 cut(s) 318, 406, 675, 726
BseSI GKGCMC 1 cut(s) 127
BseXI GCAGC 6 cut(s) 193, 247, 397, 419, 650, 712
BseYI CCCAGC 1 cut(s) 655
BsgI GTGCAG 1 cut(s) 668
BshFI GGCC 1 cut(s) 227
BshNI GGYRCC 1 cut(s) 122
BsiHKAI GWGCWC 2 cut(s) 401, 576
BsiSI CCGG 3 cut(s) 120, 644, 692
BslFI GGGAC 1 cut(s) 638
BsmAI GTCTC 1 cut(s) 152
BsmFI GGGAC 1 cut(s) 638
BsnI GGCC 1 cut(s) 227
Bsp119I TTCGAA 1 cut(s) 294
Bsp1286I GDGCHC 3 cut(s) 127, 401, 576
Bsp13I TCCGGA 1 cut(s) 691
Bsp143I GATC 2 cut(s) 340, 501
Bsp1720I GCTNAGC 1 cut(s) 585
BspACI CCGC 2 cut(s) 107, 582
BspANI GGCC 1 cut(s) 227
BspCNI CTCAG 2 cut(s) 577, 730
BspEI TCCGGA 1 cut(s) 691
BspLI GGNNCC 2 cut(s) 124, 654
BspMAI CTGCAG 1 cut(s) 640
BspMI ACCTGC 1 cut(s) 640
BspPI GGATC 1 cut(s) 496
BspQI GCTCTTC 2 cut(s) 291, 564
BspT104I TTCGAA 1 cut(s) 294
BspT107I GGYRCC 1 cut(s) 122
BsrDI GCAATG 2 cut(s) 420, 429
BsrI ACTGG 4 cut(s) 318, 406, 675, 726
BssECI CCNNGG 2 cut(s) 228, 375
BssMI GATC 2 cut(s) 340, 501
BssT1I CCWWGG 1 cut(s) 228
Bst2UI CCWGG 2 cut(s) 85, 506
Bst6I CTCTTC 3 cut(s) 281, 291, 564
BstBI TTCGAA 1 cut(s) 294
BstC8I GCNNGC 1 cut(s) 735
BstDEI CTNAG 3 cut(s) 142, 585, 738
BstDSI CCRYGG 1 cut(s) 375
BstF5I GGATG 3 cut(s) 115, 472, 553
BstKTI GATC 2 cut(s) 343, 504
BstMAI GTCTC 1 cut(s) 152
BstMBI GATC 2 cut(s) 340, 501
BstMWI GCNNNNNNNGC 3 cut(s) 419, 734, 743
BstNI CCWGG 2 cut(s) 85, 506
BstSCI CCNGG 2 cut(s) 83, 504
BstSFI CTRYAG 1 cut(s) 636
BstSLI GKGCMC 1 cut(s) 127
BstV1I GCAGC 6 cut(s) 193, 247, 397, 419, 650, 712
BstX2I RGATCY 1 cut(s) 501
BstYI RGATCY 1 cut(s) 501
BsuRI GGCC 1 cut(s) 227
BtgI CCRYGG 1 cut(s) 375
BtrI CACGTC 1 cut(s) 627
BtsCI GGATG 3 cut(s) 115, 472, 553
BtsIMutI CAGTG 2 cut(s) 275, 399
BveI ACCTGC 1 cut(s) 640
Cac8I GCNNGC 1 cut(s) 735
Cfr13I GGNCC 2 cut(s) 225, 652
Csp6I GTAC 2 cut(s) 191, 678
CviAII CATG 7 cut(s) 17, 76, 136, 218, 338, 463, 493
CviQI GTAC 2 cut(s) 191, 678
DdeI CTNAG 3 cut(s) 142, 585, 738
DpnI GATC 2 cut(s) 342, 503
DpnII GATC 2 cut(s) 340, 501
Eam1104I CTCTTC 3 cut(s) 281, 291, 564
EarI CTCTTC 3 cut(s) 281, 291, 564
Ecl136II GAGCTC 1 cut(s) 574
Eco130I CCWWGG 1 cut(s) 228
Eco24I GRGCYC 1 cut(s) 576
Eco47I GGWCC 1 cut(s) 652
Eco53kI GAGCTC 1 cut(s) 574
Eco57I CTGAAG 2 cut(s) 590, 729
EcoICRI GAGCTC 1 cut(s) 574
EcoO109I RGGNCCY 1 cut(s) 652
EcoRII CCWGG 2 cut(s) 83, 504
EcoT14I CCWWGG 1 cut(s) 228
EcoT38I GRGCYC 1 cut(s) 576
ErhI CCWWGG 1 cut(s) 228
FaeI CATG 7 cut(s) 20, 79, 139, 221, 341, 466, 496
FaiI YATR 8 cut(s) 18, 77, 137, 219, 339, 464, 494, 751
FalI AAGNNNNNCTT 2 cut(s) 549, 581
FaqI GGGAC 1 cut(s) 638
FatI CATG 7 cut(s) 16, 75, 135, 217, 337, 462, 492
FbaI TGATCA 1 cut(s) 340
FblI GTMKAC 2 cut(s) 453, 629
Fnu4HI GCNGC 7 cut(s) 207, 261, 408, 411, 582, 639, 726
FokI GGATG 3 cut(s) 122, 479, 560
FriOI GRGCYC 1 cut(s) 576
Fsp4HI GCNGC 7 cut(s) 207, 261, 408, 411, 582, 639, 726
FspBI CTAG 3 cut(s) 194, 356, 386
GluI GCNGC 7 cut(s) 207, 261, 408, 411, 582, 639, 726
GsaI CCCAGC 1 cut(s) 659
GsuI CTGGAG 1 cut(s) 423
HaeIII GGCC 1 cut(s) 227
HapII CCGG 3 cut(s) 120, 644, 692
Hin1II CATG 7 cut(s) 20, 79, 139, 221, 341, 466, 496
HincII GTYRAC 1 cut(s) 153
HindII GTYRAC 1 cut(s) 153
HindIII AAGCTT 1 cut(s) 510
HinfI GANTC 2 cut(s) 113, 520
HpaI GTTAAC 1 cut(s) 153
HpaII CCGG 3 cut(s) 120, 644, 692
HphI GGTGA 3 cut(s) 52, 73, 542
Hpy166II GTNNAC 4 cut(s) 81, 153, 454, 630
Hpy188I TCNGA 2 cut(s) 345, 525
Hpy188III TCNNGA 2 cut(s) 386, 692
Hpy8I GTNNAC 4 cut(s) 81, 153, 454, 630
Hpy99I CGWCG 1 cut(s) 37
HpyAV CCTTC 3 cut(s) 196, 353, 412
HpyCH4IV ACGT 2 cut(s) 450, 626
HpyCH4V TGCA 6 cut(s) 337, 413, 427, 638, 649, 733
HpyF10VI GCNNNNNNNGC 3 cut(s) 419, 734, 743
HpyF3I CTNAG 3 cut(s) 142, 585, 738
HpySE526I ACGT 2 cut(s) 450, 626
Hsp92II CATG 7 cut(s) 20, 79, 139, 221, 341, 466, 496
Kpn2I TCCGGA 1 cut(s) 691
Ksp22I TGATCA 1 cut(s) 340
KspAI GTTAAC 1 cut(s) 153
Kzo9I GATC 2 cut(s) 340, 501
LguI GCTCTTC 2 cut(s) 291, 564
LmnI GCTCC 2 cut(s) 404, 646
Lsp1109I GCAGC 6 cut(s) 193, 247, 397, 419, 650, 712
LweI GCATC 1 cut(s) 379
MaeI CTAG 3 cut(s) 194, 356, 386
MaeII ACGT 2 cut(s) 450, 626
MaeIII GTNAC 2 cut(s) 530, 613
MalI GATC 2 cut(s) 342, 503
MboI GATC 2 cut(s) 340, 501
MboII GAAGA 7 cut(s) 295, 298, 308, 581, 596, 722, 725
MflI RGATCY 1 cut(s) 501
MhlI GDGCHC 3 cut(s) 127, 401, 576
MluCI AATT 2 cut(s) 90, 471
MmeI TCCRAC 2 cut(s) 32, 534
MnlI CCTC 6 cut(s) 15, 24, 127, 192, 282, 538
MroI TCCGGA 1 cut(s) 691
MroXI GAANNNNTTC 2 cut(s) 290, 603
MseI TTAA 3 cut(s) 152, 279, 474
MspA1I CMGCKG 2 cut(s) 410, 584
MspI CCGG 3 cut(s) 120, 644, 692
MspR9I CCNGG 2 cut(s) 85, 506
MvaI CCWGG 2 cut(s) 85, 506
MwoI GCNNNNNNNGC 3 cut(s) 419, 734, 743
NdeII GATC 2 cut(s) 340, 501
NlaIII CATG 7 cut(s) 20, 79, 139, 221, 341, 466, 496
NlaIV GGNNCC 2 cut(s) 124, 654
NmuCI GTSAC 1 cut(s) 530
NspV TTCGAA 1 cut(s) 294
PciSI GCTCTTC 2 cut(s) 291, 564
PdmI GAANNNNTTC 2 cut(s) 290, 603
PfeI GAWTC 2 cut(s) 113, 520
PflFI GACNNNGTC 1 cut(s) 458
PfoI TCCNGGA 1 cut(s) 504
PkrI GCNGC 7 cut(s) 208, 262, 409, 412, 583, 640, 727
PpuMI RGGWCCY 1 cut(s) 652
PshBI ATTAAT 1 cut(s) 474
Psp124BI GAGCTC 1 cut(s) 576
Psp5II RGGWCCY 1 cut(s) 652
Psp6I CCWGG 2 cut(s) 83, 504
PspFI CCCAGC 1 cut(s) 655
PspGI CCWGG 2 cut(s) 83, 504
PspN4I GGNNCC 2 cut(s) 124, 654
PspPI GGNCC 2 cut(s) 225, 652
PspPPI RGGWCCY 1 cut(s) 652
PstI CTGCAG 1 cut(s) 640
PsuI RGATCY 1 cut(s) 501
PsyI GACNNNGTC 1 cut(s) 458
PvuII CAGCTG 1 cut(s) 410
RsaI GTAC 2 cut(s) 192, 679
RsaNI GTAC 2 cut(s) 191, 678
SacI GAGCTC 1 cut(s) 576
SapI GCTCTTC 2 cut(s) 291, 564
SaqAI TTAA 3 cut(s) 152, 279, 474
SatI GCNGC 7 cut(s) 207, 261, 408, 411, 582, 639, 726
Sau3AI GATC 2 cut(s) 340, 501
Sau96I GGNCC 2 cut(s) 225, 652
ScaI AGTACT 2 cut(s) 192, 679
ScrFI CCNGG 2 cut(s) 85, 506
SduI GDGCHC 3 cut(s) 127, 401, 576
SfaNI GCATC 1 cut(s) 379
SfcI CTRYAG 1 cut(s) 636
SfuI TTCGAA 1 cut(s) 294
SinI GGWCC 1 cut(s) 652
SmlI CTYRAG 1 cut(s) 394
SmoI CTYRAG 1 cut(s) 394
Sse9I AATT 2 cut(s) 90, 471
SsiI CCGC 2 cut(s) 107, 582
SspMI CTAG 3 cut(s) 194, 356, 386
SstI GAGCTC 1 cut(s) 576
StyD4I CCNGG 2 cut(s) 83, 504
StyI CCWWGG 1 cut(s) 228
TaiI ACGT 2 cut(s) 453, 629
TaqI TCGA 4 cut(s) 54, 294, 518, 576
TasI AATT 2 cut(s) 90, 471
TatI WGTACW 2 cut(s) 190, 677
TauI GCSGC 1 cut(s) 584
TfiI GAWTC 2 cut(s) 113, 520
Tru1I TTAA 3 cut(s) 152, 279, 474
Tru9I TTAA 3 cut(s) 152, 279, 474
TscAI CASTG 2 cut(s) 275, 406
TseFI GTSAC 1 cut(s) 530
TseI GCWGC 6 cut(s) 206, 260, 407, 410, 638, 725
Tsp45I GTSAC 1 cut(s) 530
TspDTI ATGAA 6 cut(s) 126, 234, 431, 483, 509, 732
TspGWI ACGGA 1 cut(s) 392
TspRI CASTG 2 cut(s) 275, 406
Tth111I GACNNNGTC 1 cut(s) 458
VpaK11BI GGWCC 1 cut(s) 652
VspI ATTAAT 1 cut(s) 474
XbaI TCTAGA 1 cut(s) 385
XmiI GTMKAC 2 cut(s) 453, 629
XmnI GAANNNNTTC 2 cut(s) 290, 603
XspI CTAG 3 cut(s) 194, 356, 386
ZrmI AGTACT 2 cut(s) 192, 679
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.