Rh2DG070800

Belongs to the SNF7 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000584
Physical Location & Seq
Reverse (-)
5494794 .. 5498619
3826 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG070800.1

Sequence Viewer

Length: 528 bp
ATGATAATGCTAGAAGGTGCAAAAGCCACTACTGAAACTGTAGATGCCTTGAGAACTGGAGCAGCTGCCATGAAGGCAATGCAGAAAGCAACGAACATAGATGATGTGGACAAGACCATGGATGAGATTAATGAGCAGACCGAGAACATGAAACAGATCCAGGAAGCTTTGTCAACTCCAATTGGTTCAGCTGCTGATTTTGATGAGGTTTGTATTATCTTAATGCCTTTCTTTATCTATGAAGGATCTGGCCTTTTTAGGACATATTGTTTTGTTTTTGTTTTATGTATTCGATATGTAGACCTACAGAAGTTGAGACCATTTTTGCTGTTGCAGGATGAATTGGAAGCAGAACTTGAAGAGCTGGAAGGTGCTGAGTTGGAAGAACAACTTCTTCAGCCTGCAACTACAGCTCCTGCAGCTCCAGTGCATGTCCCAGAAGGAAGGCAACCAACACGTCCTGTTCCCCAGAAGCGCACTGCTGAAGAAGATGAACTGGCTGCTTTGCAGGCTGAGATGGCTCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 ko04217 map04144 map04217
Pfam Domains
Protein Families
Snf7

Protein Analysis

175

Amino Acids

19.45

Weight (kDa)

4.28

Isoelectric Point (pI)

54.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Snf7 PF03357 3 - 69 1.4e-19 Snf7
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000584)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19830 AT2G19830 AT4G29160 AT4G29160 AT4G29160
fragaria_vesca FvH4_1g06720 FvH4_1g06720 FvH4_1g06720 FvH4_2g32330 FvH4_2g32330 FvH4_4g20950
malus_domestica MD02G1072100.v1.1 MD08G1074600.v1.1 MD15G1062300.v1.1 MD15G1201900.v1.1
prunus_persica Prupe.1G416300_v2.0.a1 Prupe.1G416300_v2.0.a1 Prupe.7G215600_v2.0.a1 Prupe.7G215600_v2.0.a1 Prupe.7G215600_v2.0.a1
pyrus_communis pycom02g05610 pycom08g06160 pycom15g05890 pycom15g05900 pycom15g17920
rosa_chinensis RchiOBHm_Chr2g0092461 RchiOBHm_Chr4g0426411 RchiOBHm_Chr4g0426421 RchiOBHm_Chr6g0310361 RchiOBHm_Chr7g0204861 RchiOBHm_Chr7g0204871 RchiOBHm_Chr7g0204891
rosa_laevigata RLG00000003423 RLG00000003426 RLG00000007295 RLG00000007296 RLG00000010489 RLG00000016312
rosa_multiflora Rmu_co8485477.1_g000001 Rmu_sc0001361.1_g000025 Rmu_sc0002180.1_g000006 Rmu_sc0002180.1_g000014 Rmu_sc0002180.1_g000015 Rmu_sc0002348.1_g000004 Rmu_sc0007942.1_g000001 Rmu_sc0042068.1_g000001
rosa_roxburghii Rroxscaffold_2G00149100 Rroxscaffold_3G00252690 Rroxscaffold_7G00158620
rosa_rugosa Rorug02G0026500 Rorug04G0210700 Rorug04G0211100 Rorug06G0379300 Rorug07G0086400
rosa_samantha Rh2AG072400 Rh2BG072800 Rh2CG074000 Rh2DG070800 Rh4AG267800 Rh4BG273900 Rh4BG274000 Rh4CG288100 Rh4DG270700 Rh4DG270800 Rh6AG493500 Rh6BG503200 Rh6CG508200 Rh6DG494300 Rh7AG216800 Rh7AG216900 Rh7BG213900 Rh7CG230300 Rh7DG224400 Rh7DG224500 Rh7DG224700
rosa_wichuraiana Rw2G006030 Rw4G023220 Rw6G042940 Rw7G018790 Rw7G018800 Rw7G018820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 300
AclWI GGATC 2 cut(s) 151, 253
AcuI CTGAAG 2 cut(s) 380, 504
AflIII ACRYGT 1 cut(s) 455
AgsI TTSAA 1 cut(s) 359
AjiI CACGTC 1 cut(s) 458
AjnI CCWGG 1 cut(s) 159
AluBI AGCT 6 cut(s) 65, 167, 191, 364, 413, 422
AluI AGCT 6 cut(s) 65, 167, 191, 364, 413, 422
Alw26I GTCTC 1 cut(s) 310
AlwI GGATC 2 cut(s) 151, 253
AlwNI CAGNNNCTG 2 cut(s) 194, 416
AoxI GGCC 1 cut(s) 250
ApeKI GCWGC 5 cut(s) 62, 65, 191, 419, 500
AseI ATTAAT 1 cut(s) 129
Asp700I GAANNNNTTC 1 cut(s) 390
AspLEI GCGC 1 cut(s) 477
BbvI GCAGC 5 cut(s) 52, 74, 178, 431, 487
BccI CCATC 1 cut(s) 511
BciT130I CCWGG 1 cut(s) 161
BcoDI GTCTC 1 cut(s) 310
BfaI CTAG 1 cut(s) 11
BfmI CTRYAG 4 cut(s) 39, 305, 408, 417
BglI GCCNNNNNGGC 1 cut(s) 74
BisI GCNGC 5 cut(s) 63, 66, 192, 420, 501
BlsI GCNGC 5 cut(s) 64, 67, 193, 421, 502
Bme1390I CCNGG 1 cut(s) 161
BmgBI CACGTC 1 cut(s) 458
BmrFI CCNGG 1 cut(s) 161
BmsI GCATC 1 cut(s) 34
BpmI CTGGAG 2 cut(s) 78, 408
BpuEI CTTGAG 1 cut(s) 70
BsaI GGTCTC 1 cut(s) 310
BsaJI CCNNGG 1 cut(s) 117
BsaXI ACNNNNNCTCC 2 cut(s) 397, 427
Bse1I ACTGG 3 cut(s) 61, 425, 501
Bse3DI GCAATG 1 cut(s) 84
BseBI CCWGG 1 cut(s) 161
BseDI CCNNGG 1 cut(s) 117
BseGI GGATG 2 cut(s) 127, 343
BseMI GCAATG 1 cut(s) 84
BseMII CTCAG 2 cut(s) 366, 504
BseNI ACTGG 3 cut(s) 61, 425, 501
BseXI GCAGC 5 cut(s) 52, 74, 178, 431, 487
BshFI GGCC 1 cut(s) 252
BslFI GGGAC 1 cut(s) 419
BsmAI GTCTC 1 cut(s) 310
BsmFI GGGAC 1 cut(s) 419
BsnI GGCC 1 cut(s) 252
Bso31I GGTCTC 1 cut(s) 310
Bsp143I GATC 2 cut(s) 156, 245
Bsp19I CCATGG 1 cut(s) 117
BspANI GGCC 1 cut(s) 252
BspCNI CTCAG 2 cut(s) 367, 505
BspMAI CTGCAG 1 cut(s) 421
BspPI GGATC 2 cut(s) 151, 253
BspQI GCTCTTC 1 cut(s) 354
BspTNI GGTCTC 1 cut(s) 310
BsrDI GCAATG 1 cut(s) 84
BsrI ACTGG 3 cut(s) 61, 425, 501
BssECI CCNNGG 1 cut(s) 117
BssMI GATC 2 cut(s) 156, 245
BssT1I CCWWGG 1 cut(s) 117
Bst2UI CCWGG 1 cut(s) 161
Bst4CI ACNGT 1 cut(s) 40
Bst6I CTCTTC 1 cut(s) 354
BstC8I GCNNGC 2 cut(s) 402, 510
BstDEI CTNAG 2 cut(s) 375, 513
BstDSI CCRYGG 1 cut(s) 117
BstF5I GGATG 2 cut(s) 127, 343
BstHHI GCGC 1 cut(s) 477
BstKTI GATC 2 cut(s) 159, 248
BstMAI GTCTC 1 cut(s) 310
BstMBI GATC 2 cut(s) 156, 245
BstMWI GCNNNNNNNGC 5 cut(s) 74, 410, 419, 509, 518
BstNI CCWGG 1 cut(s) 161
BstNSI RCATGY 1 cut(s) 434
BstSCI CCNGG 1 cut(s) 159
BstSFI CTRYAG 4 cut(s) 39, 305, 408, 417
BstV1I GCAGC 5 cut(s) 52, 74, 178, 431, 487
BstX2I RGATCY 2 cut(s) 156, 245
BstYI RGATCY 2 cut(s) 156, 245
BsuRI GGCC 1 cut(s) 252
BtgI CCRYGG 1 cut(s) 117
BtrI CACGTC 1 cut(s) 458
BtsCI GGATG 2 cut(s) 127, 343
BtsI GCAGTG 1 cut(s) 477
BtsIMutI CAGTG 2 cut(s) 432, 477
Cac8I GCNNGC 2 cut(s) 402, 510
CaiI CAGNNNCTG 2 cut(s) 194, 416
CfoI GCGC 1 cut(s) 477
CviAII CATG 4 cut(s) 70, 118, 148, 431
DdeI CTNAG 2 cut(s) 375, 513
DpnI GATC 2 cut(s) 158, 247
DpnII GATC 2 cut(s) 156, 245
Eam1104I CTCTTC 1 cut(s) 354
EarI CTCTTC 1 cut(s) 354
Eco130I CCWWGG 1 cut(s) 117
Eco31I GGTCTC 1 cut(s) 310
Eco57I CTGAAG 2 cut(s) 380, 504
EcoRII CCWGG 1 cut(s) 159
EcoT14I CCWWGG 1 cut(s) 117
ErhI CCWWGG 1 cut(s) 117
FaeI CATG 4 cut(s) 73, 121, 151, 434
FalI AAGNNNNNCTT 4 cut(s) 339, 371, 375, 407
FaqI GGGAC 1 cut(s) 419
FatI CATG 4 cut(s) 69, 117, 147, 430
FblI GTMKAC 1 cut(s) 300
Fnu4HI GCNGC 5 cut(s) 63, 66, 192, 420, 501
FokI GGATG 2 cut(s) 134, 350
Fsp4HI GCNGC 5 cut(s) 63, 66, 192, 420, 501
FspBI CTAG 1 cut(s) 11
GlaI GCGC 1 cut(s) 476
GluI GCNGC 5 cut(s) 63, 66, 192, 420, 501
GsuI CTGGAG 2 cut(s) 78, 408
HaeIII GGCC 1 cut(s) 252
HhaI GCGC 1 cut(s) 477
Hin1II CATG 4 cut(s) 73, 121, 151, 434
Hin6I GCGC 1 cut(s) 475
HinP1I GCGC 1 cut(s) 475
HincII GTYRAC 1 cut(s) 174
HindII GTYRAC 1 cut(s) 174
HindIII AAGCTT 1 cut(s) 165
Hpy166II GTNNAC 3 cut(s) 109, 174, 301
Hpy8I GTNNAC 3 cut(s) 109, 174, 301
HpyAV CCTTC 6 cut(s) 8, 67, 236, 362, 434, 438
HpyCH4III ACNGT 1 cut(s) 40
HpyCH4IV ACGT 1 cut(s) 457
HpyCH4V TGCA 7 cut(s) 20, 82, 334, 404, 419, 430, 508
HpyF10VI GCNNNNNNNGC 5 cut(s) 74, 410, 419, 509, 518
HpyF3I CTNAG 2 cut(s) 375, 513
HpySE526I ACGT 1 cut(s) 457
Hsp92II CATG 4 cut(s) 73, 121, 151, 434
HspAI GCGC 1 cut(s) 475
Kzo9I GATC 2 cut(s) 156, 245
LguI GCTCTTC 1 cut(s) 354
LmnI GCTCC 3 cut(s) 59, 418, 427
Lsp1109I GCAGC 5 cut(s) 52, 74, 178, 431, 487
LweI GCATC 1 cut(s) 34
MaeI CTAG 1 cut(s) 11
MaeII ACGT 1 cut(s) 457
MalI GATC 2 cut(s) 158, 247
MboI GATC 2 cut(s) 156, 245
MboII GAAGA 5 cut(s) 371, 386, 395, 497, 500
MfeI CAATTG 1 cut(s) 180
MflI RGATCY 2 cut(s) 156, 245
MluCI AATT 2 cut(s) 180, 341
MmeI TCCRAC 1 cut(s) 360
MnlI CCTC 1 cut(s) 199
MroXI GAANNNNTTC 1 cut(s) 390
MseI TTAA 2 cut(s) 129, 221
MspA1I CMGCKG 2 cut(s) 65, 191
MspR9I CCNGG 1 cut(s) 161
MunI CAATTG 1 cut(s) 180
MvaI CCWGG 1 cut(s) 161
MwoI GCNNNNNNNGC 5 cut(s) 74, 410, 419, 509, 518
NcoI CCATGG 1 cut(s) 117
NdeII GATC 2 cut(s) 156, 245
NlaIII CATG 4 cut(s) 73, 121, 151, 434
NspI RCATGY 1 cut(s) 434
PciSI GCTCTTC 1 cut(s) 354
PdmI GAANNNNTTC 1 cut(s) 390
PfoI TCCNGGA 1 cut(s) 159
PkrI GCNGC 5 cut(s) 64, 67, 193, 421, 502
PshBI ATTAAT 1 cut(s) 129
Psp6I CCWGG 1 cut(s) 159
PspGI CCWGG 1 cut(s) 159
PstI CTGCAG 1 cut(s) 421
PstNI CAGNNNCTG 2 cut(s) 194, 416
PsuI RGATCY 2 cut(s) 156, 245
PvuII CAGCTG 2 cut(s) 65, 191
SapI GCTCTTC 1 cut(s) 354
SaqAI TTAA 2 cut(s) 129, 221
SatI GCNGC 5 cut(s) 63, 66, 192, 420, 501
Sau3AI GATC 2 cut(s) 156, 245
ScrFI CCNGG 1 cut(s) 161
SfaNI GCATC 1 cut(s) 34
SfcI CTRYAG 4 cut(s) 39, 305, 408, 417
SmlI CTYRAG 1 cut(s) 49
SmoI CTYRAG 1 cut(s) 49
Sse9I AATT 2 cut(s) 180, 341
SspMI CTAG 1 cut(s) 11
StyD4I CCNGG 1 cut(s) 159
StyI CCWWGG 1 cut(s) 117
TaaI ACNGT 1 cut(s) 40
TaiI ACGT 1 cut(s) 460
TaqI TCGA 1 cut(s) 292
TaqII GACCGA 1 cut(s) 155
TasI AATT 2 cut(s) 180, 341
Tru1I TTAA 2 cut(s) 129, 221
Tru9I TTAA 2 cut(s) 129, 221
TscAI CASTG 2 cut(s) 432, 484
TseI GCWGC 5 cut(s) 62, 65, 191, 419, 500
TspDTI ATGAA 5 cut(s) 86, 164, 255, 354, 507
TspRI CASTG 2 cut(s) 432, 484
VspI ATTAAT 1 cut(s) 129
XceI RCATGY 1 cut(s) 434
XmiI GTMKAC 1 cut(s) 300
XmnI GAANNNNTTC 1 cut(s) 390
XspI CTAG 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.