Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002180.1

Orthogroup ID

OG0000584

Physical Location & Seq

Genomic Coordinates Forward (+)

36244 .. 36804

Gene Structure 561 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002180.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

atggagaaagtactccaaaagaaggctgctgctgaacttgaaaaggcgacgcgattcagcaatgcaaagaataaaagagctgctatgcaatctctgaagaagaagagcttgtatgaacagcaaatacagaacaacggaaactcccaattgcgggtccatgatctgataataatgctagaaggtgcaaaagccaacatcgaaactgtagatgccttgagaactggagcagctgcactgaaggcaatgcagaaagcagcgaatatagatgaagtggaaaagaccttggacgaggttcatgagcagacagagaagatgaaacagatccaggaagctttgtcaactccaattggatttgatgattttgatgaggatgaattggaagcagaacttgaagagctggaaagtgccgagttggaacaacaacttcttcagcctacaacaacttcttcagctccagttcacctcctagcaggaaggcaaccaaatcgtcctcttctccagaagcccaccgttgatgaagaagatgaactagctgctttgcaggctgagatggcactataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000815 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0006810 GO:0006900 GO:0006996 GO:0007032 GO:0008150 GO:0009987 GO:0010008 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0036452 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0061024 GO:0070676 GO:0071840 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

186

Amino Acids

20.71

Weight (kDa)

4.74

Isoelectric Point (pI)

51.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000584)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19830 AT2G19830 AT4G29160 AT4G29160 AT4G29160
fragaria_vesca	FvH4_1g06720 FvH4_1g06720 FvH4_1g06720 FvH4_2g32330 FvH4_2g32330 FvH4_4g20950
malus_domestica	MD02G1072100.v1.1 MD08G1074600.v1.1 MD15G1062300.v1.1 MD15G1201900.v1.1
prunus_persica	Prupe.1G416300_v2.0.a1 Prupe.1G416300_v2.0.a1 Prupe.7G215600_v2.0.a1 Prupe.7G215600_v2.0.a1 Prupe.7G215600_v2.0.a1
pyrus_communis	pycom02g05610 pycom08g06160 pycom15g05890 pycom15g05900 pycom15g17920
rosa_chinensis	RchiOBHm_Chr2g0092461 RchiOBHm_Chr4g0426411 RchiOBHm_Chr4g0426421 RchiOBHm_Chr6g0310361 RchiOBHm_Chr7g0204861 RchiOBHm_Chr7g0204871 RchiOBHm_Chr7g0204891
rosa_laevigata	RLG00000003423 RLG00000003426 RLG00000007295 RLG00000007296 RLG00000010489 RLG00000016312
rosa_multiflora	Rmu_co8485477.1_g000001 Rmu_sc0001361.1_g000025 Rmu_sc0002180.1_g000006 Rmu_sc0002180.1_g000014 Rmu_sc0002180.1_g000015 Rmu_sc0002348.1_g000004 Rmu_sc0007942.1_g000001 Rmu_sc0042068.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149100 Rroxscaffold_3G00252690 Rroxscaffold_7G00158620
rosa_rugosa	Rorug02G0026500 Rorug04G0210700 Rorug04G0211100 Rorug06G0379300 Rorug07G0086400
rosa_samantha	Rh2AG072400 Rh2BG072800 Rh2CG074000 Rh2DG070800 Rh4AG267800 Rh4BG273900 Rh4BG274000 Rh4CG288100 Rh4DG270700 Rh4DG270800 Rh6AG493500 Rh6BG503200 Rh6CG508200 Rh6DG494300 Rh7AG216800 Rh7AG216900 Rh7BG213900 Rh7CG230300 Rh7DG224400 Rh7DG224500 Rh7DG224700
rosa_wichuraiana	Rw2G006030 Rw4G023220 Rw6G042940 Rw7G018790 Rw7G018800 Rw7G018820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	52
AciI	CCGC	1 cut(s)	151
AclWI	GGATC	1 cut(s)	316
AcuI	CTGAAG	4 cut(s)	116, 257, 413, 432
AfaI	GTAC	1 cut(s)	12
AfiI	CCNNNNNNNGG	3 cut(s)	22, 150, 151
AgsI	TTSAA	2 cut(s)	41, 392
AjnI	CCWGG	1 cut(s)	324
AluBI	AGCT	7 cut(s)	80, 108, 230, 332, 397, 452, 533
AluI	AGCT	7 cut(s)	80, 108, 230, 332, 397, 452, 533
AlwI	GGATC	1 cut(s)	316
ApeKI	GCWGC	7 cut(s)	26, 29, 80, 227, 230, 254, 533
AspS9I	GGNCC	1 cut(s)	154
AsuHPI	GGTGA	1 cut(s)	452
AvaII	GGWCC	1 cut(s)	154
BbvI	GCAGC	7 cut(s)	13, 16, 67, 217, 239, 266, 520
BccI	CCATC	1 cut(s)	544
BcgI	CGANNNNNNTGC	2 cut(s)	467, 501
BciT130I	CCWGG	1 cut(s)	326
BfaI	CTAG	3 cut(s)	176, 467, 530
BfmI	CTRYAG	1 cut(s)	204
BisI	GCNGC	7 cut(s)	27, 30, 81, 228, 231, 255, 534
BlsI	GCNGC	7 cut(s)	28, 31, 82, 229, 232, 256, 535
BmcAI	AGTACT	1 cut(s)	12
Bme1390I	CCNGG	1 cut(s)	326
Bme18I	GGWCC	1 cut(s)	154
BmgT120I	GGNCC	1 cut(s)	154
BmiI	GGNNCC	1 cut(s)	155
BmrFI	CCNGG	1 cut(s)	326
BmsI	GCATC	1 cut(s)	199
BpmI	CTGGAG	3 cut(s)	243, 438, 482
BpuEI	CTTGAG	1 cut(s)	235
BsaJI	CCNNGG	1 cut(s)	282
BsaXI	ACNNNNNCTCC	2 cut(s)	125, 155
Bsc4I	CCNNNNNNNGG	3 cut(s)	22, 150, 151
Bse1I	ACTGG	2 cut(s)	226, 455
Bse3DI	GCAATG	2 cut(s)	67, 249
BseBI	CCWGG	1 cut(s)	326
BseDI	CCNNGG	1 cut(s)	282
BseGI	GGATG	1 cut(s)	376
BseLI	CCNNNNNNNGG	3 cut(s)	22, 150, 151
BseMI	GCAATG	2 cut(s)	67, 249
BseMII	CTCAG	1 cut(s)	537
BseNI	ACTGG	2 cut(s)	226, 455
BseXI	GCAGC	7 cut(s)	13, 16, 67, 217, 239, 266, 520
BsgI	GTGCAG	1 cut(s)	216
Bsh1236I	CGCG	1 cut(s)	52
BslI	CCNNNNNNNGG	3 cut(s)	22, 150, 151
Bsp143I	GATC	2 cut(s)	160, 321
BspACI	CCGC	1 cut(s)	151
BspCNI	CTCAG	1 cut(s)	538
BspFNI	CGCG	1 cut(s)	52
BspHI	TCATGA	1 cut(s)	295
BspLI	GGNNCC	1 cut(s)	155
BspPI	GGATC	1 cut(s)	316
BspQI	GCTCTTC	2 cut(s)	98, 387
BsrDI	GCAATG	2 cut(s)	67, 249
BsrI	ACTGG	2 cut(s)	226, 455
BssECI	CCNNGG	1 cut(s)	282
BssMI	GATC	2 cut(s)	160, 321
BssT1I	CCWWGG	1 cut(s)	282
Bst2UI	CCWGG	1 cut(s)	326
Bst4CI	ACNGT	2 cut(s)	205, 511
Bst6I	CTCTTC	3 cut(s)	98, 387, 498
BstC8I	GCNNGC	1 cut(s)	543
BstDEI	CTNAG	1 cut(s)	546
BstF5I	GGATG	1 cut(s)	376
BstFNI	CGCG	1 cut(s)	52
BstKTI	GATC	2 cut(s)	163, 324
BstMBI	GATC	2 cut(s)	160, 321
BstMWI	GCNNNNNNNGC	3 cut(s)	239, 542, 551
BstNI	CCWGG	1 cut(s)	326
BstSCI	CCNGG	1 cut(s)	324
BstSFI	CTRYAG	1 cut(s)	204
BstUI	CGCG	1 cut(s)	52
BstV1I	GCAGC	7 cut(s)	13, 16, 67, 217, 239, 266, 520
BstX2I	RGATCY	1 cut(s)	321
BstYI	RGATCY	1 cut(s)	321
BtsCI	GGATG	1 cut(s)	376
BtsIMutI	CAGTG	1 cut(s)	233
Cac8I	GCNNGC	1 cut(s)	543
CciI	TCATGA	1 cut(s)	295
Cfr13I	GGNCC	1 cut(s)	154
CseI	GACGC	1 cut(s)	58
Csp6I	GTAC	1 cut(s)	11
CviAII	CATG	2 cut(s)	158, 296
CviQI	GTAC	1 cut(s)	11
DdeI	CTNAG	1 cut(s)	546
DpnI	GATC	2 cut(s)	162, 323
DpnII	GATC	2 cut(s)	160, 321
Eam1104I	CTCTTC	3 cut(s)	98, 387, 498
EarI	CTCTTC	3 cut(s)	98, 387, 498
Eco130I	CCWWGG	1 cut(s)	282
Eco47I	GGWCC	1 cut(s)	154
Eco57I	CTGAAG	4 cut(s)	116, 257, 413, 432
EcoRII	CCWGG	1 cut(s)	324
EcoT14I	CCWWGG	1 cut(s)	282
ErhI	CCWWGG	1 cut(s)	282
FaeI	CATG	2 cut(s)	161, 299
FaiI	YATR	6 cut(s)	86, 114, 159, 263, 297, 559
FalI	AAGNNNNNCTT	4 cut(s)	92, 124, 372, 404
FatI	CATG	2 cut(s)	157, 295
FauI	CCCGC	1 cut(s)	144
Fnu4HI	GCNGC	7 cut(s)	27, 30, 81, 228, 231, 255, 534
FokI	GGATG	1 cut(s)	383
Fsp4HI	GCNGC	7 cut(s)	27, 30, 81, 228, 231, 255, 534
FspBI	CTAG	3 cut(s)	176, 467, 530
GluI	GCNGC	7 cut(s)	27, 30, 81, 228, 231, 255, 534
GsuI	CTGGAG	3 cut(s)	243, 438, 482
HgaI	GACGC	1 cut(s)	58
Hin1II	CATG	2 cut(s)	161, 299
HincII	GTYRAC	1 cut(s)	339
HindII	GTYRAC	1 cut(s)	339
HindIII	AAGCTT	1 cut(s)	330
HinfI	GANTC	1 cut(s)	54
HphI	GGTGA	1 cut(s)	452
Hpy166II	GTNNAC	2 cut(s)	339, 460
Hpy188I	TCNGA	2 cut(s)	96, 165
Hpy188III	TCNNGA	2 cut(s)	296, 499
Hpy8I	GTNNAC	2 cut(s)	339, 460
Hpy99I	CGWCG	1 cut(s)	52
HpyAV	CCTTC	4 cut(s)	16, 173, 232, 468
HpyCH4III	ACNGT	2 cut(s)	205, 511
HpyCH4V	TGCA	6 cut(s)	65, 88, 185, 233, 247, 541
HpyF10VI	GCNNNNNNNGC	3 cut(s)	239, 542, 551
HpyF3I	CTNAG	1 cut(s)	546
Hsp92II	CATG	2 cut(s)	161, 299
Kzo9I	GATC	2 cut(s)	160, 321
LguI	GCTCTTC	2 cut(s)	98, 387
LmnI	GCTCC	2 cut(s)	224, 457
LpnPI	CCDG	8 cut(s)	207, 311, 338, 383, 456, 468, 512, 527
Lsp1109I	GCAGC	7 cut(s)	13, 16, 67, 217, 239, 266, 520
LweI	GCATC	1 cut(s)	199
MaeI	CTAG	3 cut(s)	176, 467, 530
MalI	GATC	2 cut(s)	162, 323
MboI	GATC	2 cut(s)	160, 321
MfeI	CAATTG	2 cut(s)	146, 345
MflI	RGATCY	1 cut(s)	321
MluCI	AATT	3 cut(s)	146, 345, 374
MmeI	TCCRAC	1 cut(s)	393
MnlI	CCTC	4 cut(s)	283, 361, 473, 501
MspA1I	CMGCKG	1 cut(s)	230
MspR9I	CCNGG	1 cut(s)	326
MunI	CAATTG	2 cut(s)	146, 345
MvaI	CCWGG	1 cut(s)	326
MvnI	CGCG	1 cut(s)	52
MwoI	GCNNNNNNNGC	3 cut(s)	239, 542, 551
NdeII	GATC	2 cut(s)	160, 321
NlaIII	CATG	2 cut(s)	161, 299
NlaIV	GGNNCC	1 cut(s)	155
NmeAIII	GCCGAG	1 cut(s)	433
PagI	TCATGA	1 cut(s)	295
PciSI	GCTCTTC	2 cut(s)	98, 387
PfeI	GAWTC	1 cut(s)	54
PfoI	TCCNGGA	1 cut(s)	324
PkrI	GCNGC	7 cut(s)	28, 31, 82, 229, 232, 256, 535
Psp6I	CCWGG	1 cut(s)	324
PspGI	CCWGG	1 cut(s)	324
PspN4I	GGNNCC	1 cut(s)	155
PspPI	GGNCC	1 cut(s)	154
PsrI	GAACNNNNNNTAC	2 cut(s)	108, 140
PsuI	RGATCY	1 cut(s)	321
PvuII	CAGCTG	1 cut(s)	230
RsaI	GTAC	1 cut(s)	12
RsaNI	GTAC	1 cut(s)	11
SapI	GCTCTTC	2 cut(s)	98, 387
SatI	GCNGC	7 cut(s)	27, 30, 81, 228, 231, 255, 534
Sau3AI	GATC	2 cut(s)	160, 321
Sau96I	GGNCC	1 cut(s)	154
ScaI	AGTACT	1 cut(s)	12
ScrFI	CCNGG	1 cut(s)	326
SfaNI	GCATC	1 cut(s)	199
SfcI	CTRYAG	1 cut(s)	204
SinI	GGWCC	1 cut(s)	154
SmlI	CTYRAG	1 cut(s)	214
SmoI	CTYRAG	1 cut(s)	214
Sse9I	AATT	3 cut(s)	146, 345, 374
SsiI	CCGC	1 cut(s)	151
SspMI	CTAG	3 cut(s)	176, 467, 530
StyD4I	CCNGG	1 cut(s)	324
StyI	CCWWGG	1 cut(s)	282
TaaI	ACNGT	2 cut(s)	205, 511
TaqI	TCGA	1 cut(s)	198
TasI	AATT	3 cut(s)	146, 345, 374
TatI	WGTACW	1 cut(s)	10
TfiI	GAWTC	1 cut(s)	54
TscAI	CASTG	1 cut(s)	240
TseI	GCWGC	7 cut(s)	26, 29, 80, 227, 230, 254, 533
TspDTI	ATGAA	7 cut(s)	129, 282, 284, 329, 387, 531, 540
TspGWI	ACGGA	1 cut(s)	150
TspRI	CASTG	1 cut(s)	240
VpaK11BI	GGWCC	1 cut(s)	154
XspI	CTAG	3 cut(s)	176, 467, 530
ZrmI	AGTACT	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.