Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0000584

Physical Location & Seq

Genomic Coordinates Reverse (-)

3826059 .. 3828236

Gene Structure 2178 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g05610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGTTTACCAGGATTTTTGGGAAACCCAGACAGGAAAACAGTGCCCTCACCACCTTAGACAAGTTGAATGAGACACTTGAAATGCTTGAGAAAAAGGAGAAAGTACTACAAAAGAAGGCTGCTGGAGAAGTTGATAGGGCCAAGGAATTCACCAGAGCAAAGAACAAAAGGGCCGCTATACAATGTTTGAAGAGGAAGCGGTTATATGAGCAGCAAATAGAGCAGCTTGGAAATTTCCAGTTGCGTATCCATGATCAGATGATAATGCTAGAAGGTGCAAAAGCCACAACTGAAACTGTAGATGCCTTGAGAACTGGAGCTGCTGCAATGAAGGCAATGCAAAAAGCAACGAACATAGATGATGTGGACAAGACTATGGATGAGATTAATGAGCAAACAGAGAACATGAAACAGATACAGGAAGCATTGTCAACTCCAATTGGTGCAGCTGCTGATTTTGATGAGGATGAATTGGAAGCAGAGCTTGAAGAGCTGGAAGGTGCAGAGTTGGAGGAACAACTTCTTCAGCCAGCAACACAAGCTCCTGCAGCGCCAGTGCAGGTCCCAGCAGGAAGGCAACCAACTCGCCCTGCGCCCCAAAGGCGCACTGAAGAAGAAGATGAATTGGCTGCTTTGCAGGCTGAGATGGCACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000815 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0006810 GO:0006900 GO:0006996 GO:0007032 GO:0008150 GO:0009987 GO:0010008 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0036452 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0061024 GO:0070676 GO:0071840 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

219

Amino Acids

24.46

Weight (kDa)

4.8

Isoelectric Point (pI)

50.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Snf7	PF03357	20 - 186	1.3e-46	Snf7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000584)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19830 AT2G19830 AT4G29160 AT4G29160 AT4G29160
fragaria_vesca	FvH4_1g06720 FvH4_1g06720 FvH4_1g06720 FvH4_2g32330 FvH4_2g32330 FvH4_4g20950
malus_domestica	MD02G1072100.v1.1 MD08G1074600.v1.1 MD15G1062300.v1.1 MD15G1201900.v1.1
prunus_persica	Prupe.1G416300_v2.0.a1 Prupe.1G416300_v2.0.a1 Prupe.7G215600_v2.0.a1 Prupe.7G215600_v2.0.a1 Prupe.7G215600_v2.0.a1
pyrus_communis	pycom02g05610 pycom08g06160 pycom15g05890 pycom15g05900 pycom15g17920
rosa_chinensis	RchiOBHm_Chr2g0092461 RchiOBHm_Chr4g0426411 RchiOBHm_Chr4g0426421 RchiOBHm_Chr6g0310361 RchiOBHm_Chr7g0204861 RchiOBHm_Chr7g0204871 RchiOBHm_Chr7g0204891
rosa_laevigata	RLG00000003423 RLG00000003426 RLG00000007295 RLG00000007296 RLG00000010489 RLG00000016312
rosa_multiflora	Rmu_co8485477.1_g000001 Rmu_sc0001361.1_g000025 Rmu_sc0002180.1_g000006 Rmu_sc0002180.1_g000014 Rmu_sc0002180.1_g000015 Rmu_sc0002348.1_g000004 Rmu_sc0007942.1_g000001 Rmu_sc0042068.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149100 Rroxscaffold_3G00252690 Rroxscaffold_7G00158620
rosa_rugosa	Rorug02G0026500 Rorug04G0210700 Rorug04G0211100 Rorug06G0379300 Rorug07G0086400
rosa_samantha	Rh2AG072400 Rh2BG072800 Rh2CG074000 Rh2DG070800 Rh4AG267800 Rh4BG273900 Rh4BG274000 Rh4CG288100 Rh4DG270700 Rh4DG270800 Rh6AG493500 Rh6BG503200 Rh6CG508200 Rh6DG494300 Rh7AG216800 Rh7AG216900 Rh7BG213900 Rh7CG230300 Rh7DG224400 Rh7DG224500 Rh7DG224700
rosa_wichuraiana	Rw2G006030 Rw4G023220 Rw6G042940 Rw7G018790 Rw7G018800 Rw7G018820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	550
AciI	CCGC	2 cut(s)	174, 199
AcsI	RAATTY	2 cut(s)	146, 232
AcuI	CTGAAG	2 cut(s)	509, 630
AfaI	GTAC	1 cut(s)	105
AgsI	TTSAA	4 cut(s)	67, 80, 190, 488
AjnI	CCWGG	1 cut(s)	8
AluBI	AGCT	6 cut(s)	226, 320, 449, 484, 493, 542
AluI	AGCT	6 cut(s)	226, 320, 449, 484, 493, 542
Alw26I	GTCTC	1 cut(s)	65
AlwNI	CAGNNNCTG	1 cut(s)	452
AoxI	GGCC	2 cut(s)	138, 171
ApeKI	GCWGC	9 cut(s)	119, 211, 223, 320, 323, 446, 449, 548, 629
ApoI	RAATTY	2 cut(s)	146, 232
AseI	ATTAAT	1 cut(s)	387
Asp700I	GAANNNNTTC	1 cut(s)	519
AspLEI	GCGC	3 cut(s)	553, 595, 606
AspS9I	GGNCC	3 cut(s)	138, 171, 562
AsuHPI	GGTGA	2 cut(s)	40, 142
AvaII	GGWCC	1 cut(s)	562
BaeGI	GKGCMC	1 cut(s)	46
BbvI	GCAGC	9 cut(s)	106, 223, 235, 307, 310, 436, 458, 560, 616
BccI	CCATC	1 cut(s)	640
BcgI	CGANNNNNNTGC	2 cut(s)	566, 600
BciT130I	CCWGG	1 cut(s)	10
BciVI	GTATCC	1 cut(s)	257
BclI	TGATCA	1 cut(s)	253
BcoDI	GTCTC	1 cut(s)	65
BfaI	CTAG	1 cut(s)	269
BfmI	CTRYAG	2 cut(s)	297, 546
BfoI	RGCGCY	1 cut(s)	554
BfuAI	ACCTGC	1 cut(s)	550
BfuI	GTATCC	1 cut(s)	257
BglI	GCCNNNNNGGC	1 cut(s)	601
BmcAI	AGTACT	1 cut(s)	105
Bme1390I	CCNGG	1 cut(s)	10
Bme18I	GGWCC	1 cut(s)	562
BmgT120I	GGNCC	3 cut(s)	138, 171, 562
BmiI	GGNNCC	1 cut(s)	564
BmrFI	CCNGG	1 cut(s)	10
BmsI	GCATC	1 cut(s)	292
BpmI	CTGGAG	2 cut(s)	144, 336
BpuEI	CTTGAG	2 cut(s)	107, 328
BsaJI	CCNNGG	1 cut(s)	141
BsaXI	ACNNNNNCTCC	2 cut(s)	526, 556
Bse1I	ACTGG	3 cut(s)	238, 319, 554
Bse3DI	GCAATG	2 cut(s)	333, 342
BseBI	CCWGG	1 cut(s)	10
BseDI	CCNNGG	1 cut(s)	141
BseGI	GGATG	2 cut(s)	385, 472
BseMI	GCAATG	2 cut(s)	333, 342
BseMII	CTCAG	1 cut(s)	633
BseNI	ACTGG	3 cut(s)	238, 319, 554
BseSI	GKGCMC	1 cut(s)	46
BseXI	GCAGC	9 cut(s)	106, 223, 235, 307, 310, 436, 458, 560, 616
BseYI	CCCAGC	1 cut(s)	565
BsgI	GTGCAG	3 cut(s)	465, 522, 578
BshFI	GGCC	2 cut(s)	140, 173
BslFI	GGGAC	1 cut(s)	548
BsmAI	GTCTC	1 cut(s)	65
BsmFI	GGGAC	1 cut(s)	548
BsnI	GGCC	2 cut(s)	140, 173
Bsp1286I	GDGCHC	1 cut(s)	46
Bsp143I	GATC	1 cut(s)	253
BspACI	CCGC	2 cut(s)	174, 199
BspANI	GGCC	2 cut(s)	140, 173
BspCNI	CTCAG	1 cut(s)	634
BspLI	GGNNCC	1 cut(s)	564
BspMAI	CTGCAG	1 cut(s)	550
BspMI	ACCTGC	1 cut(s)	550
BspQI	GCTCTTC	1 cut(s)	483
BsrDI	GCAATG	2 cut(s)	333, 342
BsrI	ACTGG	3 cut(s)	238, 319, 554
BssECI	CCNNGG	1 cut(s)	141
BssMI	GATC	1 cut(s)	253
BssT1I	CCWWGG	1 cut(s)	141
Bst2UI	CCWGG	1 cut(s)	10
Bst4CI	ACNGT	2 cut(s)	41, 298
Bst6I	CTCTTC	2 cut(s)	185, 483
BstC8I	GCNNGC	2 cut(s)	531, 639
BstDEI	CTNAG	2 cut(s)	55, 642
BstF5I	GGATG	2 cut(s)	385, 472
BstH2I	RGCGCY	1 cut(s)	554
BstHHI	GCGC	3 cut(s)	553, 595, 606
BstKTI	GATC	1 cut(s)	256
BstMAI	GTCTC	1 cut(s)	65
BstMBI	GATC	1 cut(s)	253
BstMWI	GCNNNNNNNGC	8 cut(s)	220, 332, 490, 539, 548, 601, 638, 647
BstNI	CCWGG	1 cut(s)	10
BstSCI	CCNGG	1 cut(s)	8
BstSFI	CTRYAG	2 cut(s)	297, 546
BstSLI	GKGCMC	1 cut(s)	46
BstV1I	GCAGC	9 cut(s)	106, 223, 235, 307, 310, 436, 458, 560, 616
BsuI	GTATCC	1 cut(s)	257
BsuRI	GGCC	2 cut(s)	140, 173
BtsCI	GGATG	2 cut(s)	385, 472
BtsIMutI	CAGTG	3 cut(s)	46, 561, 606
BveI	ACCTGC	1 cut(s)	550
Cac8I	GCNNGC	2 cut(s)	531, 639
CaiI	CAGNNNCTG	1 cut(s)	452
CfoI	GCGC	3 cut(s)	553, 595, 606
Cfr13I	GGNCC	3 cut(s)	138, 171, 562
Csp6I	GTAC	1 cut(s)	104
CviAII	CATG	2 cut(s)	251, 406
CviQI	GTAC	1 cut(s)	104
DdeI	CTNAG	2 cut(s)	55, 642
DpnI	GATC	1 cut(s)	255
DpnII	GATC	1 cut(s)	253
Eam1104I	CTCTTC	2 cut(s)	185, 483
EarI	CTCTTC	2 cut(s)	185, 483
Eco130I	CCWWGG	1 cut(s)	141
Eco47I	GGWCC	1 cut(s)	562
Eco57I	CTGAAG	2 cut(s)	509, 630
EcoO109I	RGGNCCY	1 cut(s)	562
EcoRI	GAATTC	1 cut(s)	146
EcoRII	CCWGG	1 cut(s)	8
EcoT14I	CCWWGG	1 cut(s)	141
ErhI	CCWWGG	1 cut(s)	141
FaeI	CATG	2 cut(s)	254, 409
FaiI	YATR	7 cut(s)	179, 205, 207, 252, 356, 377, 407
FalI	AAGNNNNNCTT	2 cut(s)	468, 500
FaqI	GGGAC	1 cut(s)	548
FatI	CATG	2 cut(s)	250, 405
FbaI	TGATCA	1 cut(s)	253
FokI	GGATG	2 cut(s)	392, 479
FspBI	CTAG	1 cut(s)	269
GlaI	GCGC	3 cut(s)	552, 594, 605
GsaI	CCCAGC	1 cut(s)	569
GsuI	CTGGAG	2 cut(s)	144, 336
HaeII	RGCGCY	1 cut(s)	554
HaeIII	GGCC	2 cut(s)	140, 173
HhaI	GCGC	3 cut(s)	553, 595, 606
Hin1II	CATG	2 cut(s)	254, 409
Hin6I	GCGC	3 cut(s)	551, 593, 604
HinP1I	GCGC	3 cut(s)	551, 593, 604
HincII	GTYRAC	1 cut(s)	432
HindII	GTYRAC	1 cut(s)	432
HphI	GGTGA	2 cut(s)	40, 142
Hpy166II	GTNNAC	3 cut(s)	6, 367, 432
Hpy188I	TCNGA	1 cut(s)	258
Hpy8I	GTNNAC	3 cut(s)	6, 367, 432
HpyAV	CCTTC	5 cut(s)	109, 266, 325, 491, 567
HpyCH4III	ACNGT	2 cut(s)	41, 298
HpyCH4V	TGCA	8 cut(s)	278, 326, 340, 446, 503, 548, 559, 637
HpyF10VI	GCNNNNNNNGC	8 cut(s)	220, 332, 490, 539, 548, 601, 638, 647
HpyF3I	CTNAG	2 cut(s)	55, 642
Hsp92II	CATG	2 cut(s)	254, 409
HspAI	GCGC	3 cut(s)	551, 593, 604
Ksp22I	TGATCA	1 cut(s)	253
Kzo9I	GATC	1 cut(s)	253
LguI	GCTCTTC	1 cut(s)	483
LmnI	GCTCC	2 cut(s)	317, 547
Lsp1109I	GCAGC	9 cut(s)	106, 223, 235, 307, 310, 436, 458, 560, 616
LweI	GCATC	1 cut(s)	292
MaeI	CTAG	1 cut(s)	269
MalI	GATC	1 cut(s)	255
MboI	GATC	1 cut(s)	253
MboII	GAAGA	6 cut(s)	202, 500, 515, 623, 626, 629
MfeI	CAATTG	1 cut(s)	438
MhlI	GDGCHC	1 cut(s)	46
MluCI	AATT	5 cut(s)	146, 232, 438, 470, 623
MmeI	TCCRAC	1 cut(s)	489
MnlI	CCTC	4 cut(s)	56, 186, 457, 505
MroXI	GAANNNNTTC	1 cut(s)	519
MseI	TTAA	2 cut(s)	387, 655
MspA1I	CMGCKG	1 cut(s)	449
MspR9I	CCNGG	1 cut(s)	10
MunI	CAATTG	1 cut(s)	438
MvaI	CCWGG	1 cut(s)	10
MwoI	GCNNNNNNNGC	8 cut(s)	220, 332, 490, 539, 548, 601, 638, 647
NdeII	GATC	1 cut(s)	253
NlaIII	CATG	2 cut(s)	254, 409
NlaIV	GGNNCC	1 cut(s)	564
PciSI	GCTCTTC	1 cut(s)	483
PdmI	GAANNNNTTC	1 cut(s)	519
PpuMI	RGGWCCY	1 cut(s)	562
PshBI	ATTAAT	1 cut(s)	387
Psp5II	RGGWCCY	1 cut(s)	562
Psp6I	CCWGG	1 cut(s)	8
PspFI	CCCAGC	1 cut(s)	565
PspGI	CCWGG	1 cut(s)	8
PspN4I	GGNNCC	1 cut(s)	564
PspPI	GGNCC	3 cut(s)	138, 171, 562
PspPPI	RGGWCCY	1 cut(s)	562
PstI	CTGCAG	1 cut(s)	550
PstNI	CAGNNNCTG	1 cut(s)	452
PvuII	CAGCTG	1 cut(s)	449
RsaI	GTAC	1 cut(s)	105
RsaNI	GTAC	1 cut(s)	104
SapI	GCTCTTC	1 cut(s)	483
SaqAI	TTAA	2 cut(s)	387, 655
Sau3AI	GATC	1 cut(s)	253
Sau96I	GGNCC	3 cut(s)	138, 171, 562
ScaI	AGTACT	1 cut(s)	105
ScrFI	CCNGG	1 cut(s)	10
SduI	GDGCHC	1 cut(s)	46
SfaNI	GCATC	1 cut(s)	292
SfcI	CTRYAG	2 cut(s)	297, 546
SinI	GGWCC	1 cut(s)	562
SmlI	CTYRAG	2 cut(s)	86, 307
SmoI	CTYRAG	2 cut(s)	86, 307
Sse9I	AATT	5 cut(s)	146, 232, 438, 470, 623
SsiI	CCGC	2 cut(s)	174, 199
SspMI	CTAG	1 cut(s)	269
StyD4I	CCNGG	1 cut(s)	8
StyI	CCWWGG	1 cut(s)	141
TaaI	ACNGT	2 cut(s)	41, 298
TasI	AATT	5 cut(s)	146, 232, 438, 470, 623
TatI	WGTACW	1 cut(s)	103
TauI	GCSGC	1 cut(s)	176
Tru1I	TTAA	2 cut(s)	387, 655
Tru9I	TTAA	2 cut(s)	387, 655
TscAI	CASTG	3 cut(s)	46, 561, 613
TseI	GCWGC	9 cut(s)	119, 211, 223, 320, 323, 446, 449, 548, 629
TspDTI	ATGAA	4 cut(s)	344, 422, 483, 636
TspRI	CASTG	3 cut(s)	46, 561, 613
VpaK11BI	GGWCC	1 cut(s)	562
VspI	ATTAAT	1 cut(s)	387
XapI	RAATTY	2 cut(s)	146, 232
XmnI	GAANNNNTTC	1 cut(s)	519
XspI	CTAG	1 cut(s)	269
ZrmI	AGTACT	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.