Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000584

Physical Location & Seq

Genomic Coordinates Forward (+)

48268380 .. 48269074

Gene Structure 695 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003423

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGTTTGCCAGGCTTTTTGGGAAACCTAAAATGGAACCGATCACCTTTGAAAAGTCAAGTGAGAATCTTGAAATGCTTGAGAAAAAGGAGAAAGTACTCCAAAAGAAGGCTGCTGCTGAACTTGAAAAGGCGACGCGATTCAGCAATGCAAAGAATAAAAGAGCTGCTATGCAATCTCTGAAGAAGAAGAGGTGCAAAAGCCAACATCGAACTGTAGATGCCTTGAGAACTGGAGCAGCTGCACTGAAGGCAATGCAGAAAGCAGCGAATATAGATGAAGTGGAAAAGACCTTGGACGAGGTTCATGAGCAGACAGAGAAGATGAAACAGATCCAGGAAGCTTTGTCAACTCCAATTGGATTTGATGATTTTGATGAGGATGAATTGGAAGCAGAACTTGAAGAGCTGGAAAGTGCCGAGTTGGAACAACAACTTCTTCAGCCTGCAGCAACTTCTTCAGCTCCAGTTCACCTCCCAGCAGGAAGGCAACCAAATCGTCCTCTTCTCCAGAAGCCCACCGTTGATGAAGAAGATGAACCAGCTGCTTTGCAGGCTGAGATGGCACTACAAGCAGCTTGCACTATGTTATATATGCTAAGTGTAGAAGTTTTTATGCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000815 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0006810 GO:0006900 GO:0006996 GO:0007032 GO:0008150 GO:0009987 GO:0010008 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0036452 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0061024 GO:0070676 GO:0071840 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

207

Amino Acids

23.13

Weight (kDa)

5.14

Isoelectric Point (pI)

59.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Snf7	PF03357	65 - 155	6.3e-24	Snf7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000584)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19830 AT2G19830 AT4G29160 AT4G29160 AT4G29160
fragaria_vesca	FvH4_1g06720 FvH4_1g06720 FvH4_1g06720 FvH4_2g32330 FvH4_2g32330 FvH4_4g20950
malus_domestica	MD02G1072100.v1.1 MD08G1074600.v1.1 MD15G1062300.v1.1 MD15G1201900.v1.1
prunus_persica	Prupe.1G416300_v2.0.a1 Prupe.1G416300_v2.0.a1 Prupe.7G215600_v2.0.a1 Prupe.7G215600_v2.0.a1 Prupe.7G215600_v2.0.a1
pyrus_communis	pycom02g05610 pycom08g06160 pycom15g05890 pycom15g05900 pycom15g17920
rosa_chinensis	RchiOBHm_Chr2g0092461 RchiOBHm_Chr4g0426411 RchiOBHm_Chr4g0426421 RchiOBHm_Chr6g0310361 RchiOBHm_Chr7g0204861 RchiOBHm_Chr7g0204871 RchiOBHm_Chr7g0204891
rosa_laevigata	RLG00000003423 RLG00000003426 RLG00000007295 RLG00000007296 RLG00000010489 RLG00000016312
rosa_multiflora	Rmu_co8485477.1_g000001 Rmu_sc0001361.1_g000025 Rmu_sc0002180.1_g000006 Rmu_sc0002180.1_g000014 Rmu_sc0002180.1_g000015 Rmu_sc0002348.1_g000004 Rmu_sc0007942.1_g000001 Rmu_sc0042068.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149100 Rroxscaffold_3G00252690 Rroxscaffold_7G00158620
rosa_rugosa	Rorug02G0026500 Rorug04G0210700 Rorug04G0211100 Rorug06G0379300 Rorug07G0086400
rosa_samantha	Rh2AG072400 Rh2BG072800 Rh2CG074000 Rh2DG070800 Rh4AG267800 Rh4BG273900 Rh4BG274000 Rh4CG288100 Rh4DG270700 Rh4DG270800 Rh6AG493500 Rh6BG503200 Rh6CG508200 Rh6DG494300 Rh7AG216800 Rh7AG216900 Rh7BG213900 Rh7CG230300 Rh7DG224400 Rh7DG224500 Rh7DG224700
rosa_wichuraiana	Rw2G006030 Rw4G023220 Rw6G042940 Rw7G018790 Rw7G018800 Rw7G018820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	136
AclWI	GGATC	1 cut(s)	325
AcuI	CTGAAG	4 cut(s)	200, 266, 422, 441
AfaI	GTAC	1 cut(s)	96
AfiI	CCNNNNNNNGG	1 cut(s)	106
AgsI	TTSAA	4 cut(s)	50, 71, 125, 401
AjnI	CCWGG	2 cut(s)	8, 333
AluBI	AGCT	7 cut(s)	164, 239, 341, 406, 461, 542, 575
AluI	AGCT	7 cut(s)	164, 239, 341, 406, 461, 542, 575
AlwI	GGATC	1 cut(s)	325
ApeKI	GCWGC	9 cut(s)	110, 113, 164, 236, 239, 263, 446, 542, 572
AsuHPI	GGTGA	2 cut(s)	34, 461
BbvI	GCAGC	9 cut(s)	97, 100, 151, 226, 248, 275, 458, 529, 584
BccI	CCATC	1 cut(s)	553
BcgI	CGANNNNNNTGC	2 cut(s)	476, 510
BciT130I	CCWGG	2 cut(s)	10, 335
BfmI	CTRYAG	2 cut(s)	213, 444
BisI	GCNGC	9 cut(s)	111, 114, 165, 237, 240, 264, 447, 543, 573
BlsI	GCNGC	9 cut(s)	112, 115, 166, 238, 241, 265, 448, 544, 574
BmcAI	AGTACT	1 cut(s)	96
Bme1390I	CCNGG	2 cut(s)	10, 335
BmiI	GGNNCC	1 cut(s)	36
BmrFI	CCNGG	2 cut(s)	10, 335
BmsI	GCATC	1 cut(s)	208
BpmI	CTGGAG	3 cut(s)	252, 447, 491
BpuEI	CTTGAG	2 cut(s)	98, 244
BsaJI	CCNNGG	1 cut(s)	291
Bsc4I	CCNNNNNNNGG	1 cut(s)	106
Bse1I	ACTGG	2 cut(s)	235, 464
Bse3DI	GCAATG	2 cut(s)	151, 258
BseBI	CCWGG	2 cut(s)	10, 335
BseDI	CCNNGG	1 cut(s)	291
BseGI	GGATG	1 cut(s)	385
BseLI	CCNNNNNNNGG	1 cut(s)	106
BseMI	GCAATG	2 cut(s)	151, 258
BseMII	CTCAG	1 cut(s)	546
BseNI	ACTGG	2 cut(s)	235, 464
BseXI	GCAGC	9 cut(s)	97, 100, 151, 226, 248, 275, 458, 529, 584
BseYI	CCCAGC	1 cut(s)	475
BsgI	GTGCAG	1 cut(s)	225
Bsh1236I	CGCG	1 cut(s)	136
BslI	CCNNNNNNNGG	1 cut(s)	106
Bsp143I	GATC	2 cut(s)	39, 330
BspCNI	CTCAG	1 cut(s)	547
BspFNI	CGCG	1 cut(s)	136
BspHI	TCATGA	1 cut(s)	304
BspLI	GGNNCC	1 cut(s)	36
BspMAI	CTGCAG	1 cut(s)	448
BspPI	GGATC	1 cut(s)	325
BspQI	GCTCTTC	1 cut(s)	396
BsrDI	GCAATG	2 cut(s)	151, 258
BsrI	ACTGG	2 cut(s)	235, 464
BssECI	CCNNGG	1 cut(s)	291
BssMI	GATC	2 cut(s)	39, 330
BssT1I	CCWWGG	1 cut(s)	291
Bst2UI	CCWGG	2 cut(s)	10, 335
Bst4CI	ACNGT	2 cut(s)	214, 520
Bst6I	CTCTTC	3 cut(s)	182, 396, 507
BstC8I	GCNNGC	3 cut(s)	444, 552, 577
BstDEI	CTNAG	2 cut(s)	555, 596
BstF5I	GGATG	1 cut(s)	385
BstFNI	CGCG	1 cut(s)	136
BstKTI	GATC	2 cut(s)	42, 333
BstMBI	GATC	2 cut(s)	39, 330
BstMWI	GCNNNNNNNGC	4 cut(s)	248, 551, 560, 569
BstNI	CCWGG	2 cut(s)	10, 335
BstSCI	CCNGG	2 cut(s)	8, 333
BstSFI	CTRYAG	2 cut(s)	213, 444
BstUI	CGCG	1 cut(s)	136
BstV1I	GCAGC	9 cut(s)	97, 100, 151, 226, 248, 275, 458, 529, 584
BstX2I	RGATCY	1 cut(s)	330
BstYI	RGATCY	1 cut(s)	330
BtsCI	GGATG	1 cut(s)	385
BtsIMutI	CAGTG	1 cut(s)	242
Cac8I	GCNNGC	3 cut(s)	444, 552, 577
CciI	TCATGA	1 cut(s)	304
CseI	GACGC	1 cut(s)	142
Csp6I	GTAC	1 cut(s)	95
CviAII	CATG	1 cut(s)	305
CviQI	GTAC	1 cut(s)	95
DdeI	CTNAG	2 cut(s)	555, 596
DpnI	GATC	2 cut(s)	41, 332
DpnII	GATC	2 cut(s)	39, 330
Eam1104I	CTCTTC	3 cut(s)	182, 396, 507
EarI	CTCTTC	3 cut(s)	182, 396, 507
Eco130I	CCWWGG	1 cut(s)	291
Eco57I	CTGAAG	4 cut(s)	200, 266, 422, 441
EcoRII	CCWGG	2 cut(s)	8, 333
EcoT14I	CCWWGG	1 cut(s)	291
ErhI	CCWWGG	1 cut(s)	291
FaeI	CATG	1 cut(s)	308
FaiI	YATR	8 cut(s)	170, 272, 306, 584, 589, 591, 593, 614
FalI	AAGNNNNNCTT	2 cut(s)	381, 413
FatI	CATG	1 cut(s)	304
Fnu4HI	GCNGC	9 cut(s)	111, 114, 165, 237, 240, 264, 447, 543, 573
FokI	GGATG	1 cut(s)	392
Fsp4HI	GCNGC	9 cut(s)	111, 114, 165, 237, 240, 264, 447, 543, 573
GluI	GCNGC	9 cut(s)	111, 114, 165, 237, 240, 264, 447, 543, 573
GsaI	CCCAGC	1 cut(s)	479
GsuI	CTGGAG	3 cut(s)	252, 447, 491
HgaI	GACGC	1 cut(s)	142
Hin1II	CATG	1 cut(s)	308
HincII	GTYRAC	1 cut(s)	348
HindII	GTYRAC	1 cut(s)	348
HindIII	AAGCTT	1 cut(s)	339
HinfI	GANTC	2 cut(s)	64, 138
HphI	GGTGA	2 cut(s)	34, 461
Hpy166II	GTNNAC	2 cut(s)	348, 469
Hpy188I	TCNGA	1 cut(s)	180
Hpy188III	TCNNGA	3 cut(s)	68, 305, 508
Hpy8I	GTNNAC	2 cut(s)	348, 469
Hpy99I	CGWCG	1 cut(s)	136
HpyAV	CCTTC	3 cut(s)	100, 241, 477
HpyCH4III	ACNGT	2 cut(s)	214, 520
HpyCH4V	TGCA	8 cut(s)	149, 172, 195, 242, 256, 446, 550, 579
HpyF10VI	GCNNNNNNNGC	4 cut(s)	248, 551, 560, 569
HpyF3I	CTNAG	2 cut(s)	555, 596
Hsp92II	CATG	1 cut(s)	308
Kzo9I	GATC	2 cut(s)	39, 330
LguI	GCTCTTC	1 cut(s)	396
LmnI	GCTCC	2 cut(s)	233, 466
Lsp1109I	GCAGC	9 cut(s)	97, 100, 151, 226, 248, 275, 458, 529, 584
LweI	GCATC	1 cut(s)	208
MalI	GATC	2 cut(s)	41, 332
MboI	GATC	2 cut(s)	39, 330
MfeI	CAATTG	1 cut(s)	354
MflI	RGATCY	1 cut(s)	330
MluCI	AATT	2 cut(s)	354, 383
MmeI	TCCRAC	1 cut(s)	402
MnlI	CCTC	5 cut(s)	183, 292, 370, 482, 510
MspA1I	CMGCKG	2 cut(s)	239, 542
MspR9I	CCNGG	2 cut(s)	10, 335
MunI	CAATTG	1 cut(s)	354
MvaI	CCWGG	2 cut(s)	10, 335
MvnI	CGCG	1 cut(s)	136
MwoI	GCNNNNNNNGC	4 cut(s)	248, 551, 560, 569
NdeII	GATC	2 cut(s)	39, 330
NlaIII	CATG	1 cut(s)	308
NlaIV	GGNNCC	1 cut(s)	36
NmeAIII	GCCGAG	1 cut(s)	442
PagI	TCATGA	1 cut(s)	304
PciSI	GCTCTTC	1 cut(s)	396
PfeI	GAWTC	2 cut(s)	64, 138
PfoI	TCCNGGA	1 cut(s)	333
PkrI	GCNGC	9 cut(s)	112, 115, 166, 238, 241, 265, 448, 544, 574
Psp6I	CCWGG	2 cut(s)	8, 333
PspFI	CCCAGC	1 cut(s)	475
PspGI	CCWGG	2 cut(s)	8, 333
PspN4I	GGNNCC	1 cut(s)	36
PstI	CTGCAG	1 cut(s)	448
PsuI	RGATCY	1 cut(s)	330
PvuII	CAGCTG	2 cut(s)	239, 542
RsaI	GTAC	1 cut(s)	96
RsaNI	GTAC	1 cut(s)	95
SapI	GCTCTTC	1 cut(s)	396
SatI	GCNGC	9 cut(s)	111, 114, 165, 237, 240, 264, 447, 543, 573
Sau3AI	GATC	2 cut(s)	39, 330
ScaI	AGTACT	1 cut(s)	96
ScrFI	CCNGG	2 cut(s)	10, 335
SfaNI	GCATC	1 cut(s)	208
SfcI	CTRYAG	2 cut(s)	213, 444
SmlI	CTYRAG	2 cut(s)	77, 223
SmoI	CTYRAG	2 cut(s)	77, 223
Sse9I	AATT	2 cut(s)	354, 383
StyD4I	CCNGG	2 cut(s)	8, 333
StyI	CCWWGG	1 cut(s)	291
TaaI	ACNGT	2 cut(s)	214, 520
TaqI	TCGA	1 cut(s)	208
TasI	AATT	2 cut(s)	354, 383
TatI	WGTACW	1 cut(s)	94
TfiI	GAWTC	2 cut(s)	64, 138
TscAI	CASTG	1 cut(s)	249
TseI	GCWGC	9 cut(s)	110, 113, 164, 236, 239, 263, 446, 542, 572
TspDTI	ATGAA	6 cut(s)	291, 293, 338, 396, 540, 549
TspRI	CASTG	1 cut(s)	249
ZrmI	AGTACT	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.