Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000584

Physical Location & Seq

Genomic Coordinates Forward (+)

86714741 .. 86717862

Gene Structure 3122 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00149100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGTTTACCAGGCTATTTGGGAAACCGAAAACGGAATCCAGTGCCCTAACCACCTTAGACAAGTTAAATGAGACGCTTGAAATGCTTGAGAAAAAGGAGAAAGTACTACAGAAGAAGGCTGCCGGTGAAGTTGAAAGGGCCAAGGAGTTCACCAGAGCAAAGAATAAACGATCTGCTATACAATGTTTGAAGAGGAAGAAGCTGTACGAACAGCAAATAGAGCAGCTTGGAAACTTCCAACTCCGAATCCATGATCAGATGATAATGCTAGAAGGTGCAAAAGCCACTACTGAAACTGTAGATGCCTTGAGAACTGGAGCAGCTGCCATGAAGGCAATGCAGAAAGCAACGAACATAGATGATGTGGACAAGACCATGGATGAGATTAATGAGCAGACCGAGAACATGAAACAGATCCAGGAAGCTTTGTCAACTCCAATTGGTTCAGCTGCTGATTTTGATGAGGATGAATTGGAAGCAGAACTTGAAGAGCTGGAAGGTGCTGAGTTGGAAGAACAACTTCTTCAGCCTGCAACTACAGCTCCTGCAGCTCCAGTGCATGTCCCAGAAGGAAGGCAACCAACACGTCCTGTTCCCCAGAAGCGCACTGCTGAAGAAGATGAACTGGCTGCTTTGCAGGCTGAGATGGCACTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000815 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0006810 GO:0006900 GO:0006996 GO:0007032 GO:0008150 GO:0009987 GO:0010008 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0036452 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0061024 GO:0070676 GO:0071840 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

218

Amino Acids

24.38

Weight (kDa)

4.86

Isoelectric Point (pI)

50.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Snf7	PF03357	20 - 186	3e-47	Snf7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000584)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19830 AT2G19830 AT4G29160 AT4G29160 AT4G29160
fragaria_vesca	FvH4_1g06720 FvH4_1g06720 FvH4_1g06720 FvH4_2g32330 FvH4_2g32330 FvH4_4g20950
malus_domestica	MD02G1072100.v1.1 MD08G1074600.v1.1 MD15G1062300.v1.1 MD15G1201900.v1.1
prunus_persica	Prupe.1G416300_v2.0.a1 Prupe.1G416300_v2.0.a1 Prupe.7G215600_v2.0.a1 Prupe.7G215600_v2.0.a1 Prupe.7G215600_v2.0.a1
pyrus_communis	pycom02g05610 pycom08g06160 pycom15g05890 pycom15g05900 pycom15g17920
rosa_chinensis	RchiOBHm_Chr2g0092461 RchiOBHm_Chr4g0426411 RchiOBHm_Chr4g0426421 RchiOBHm_Chr6g0310361 RchiOBHm_Chr7g0204861 RchiOBHm_Chr7g0204871 RchiOBHm_Chr7g0204891
rosa_laevigata	RLG00000003423 RLG00000003426 RLG00000007295 RLG00000007296 RLG00000010489 RLG00000016312
rosa_multiflora	Rmu_co8485477.1_g000001 Rmu_sc0001361.1_g000025 Rmu_sc0002180.1_g000006 Rmu_sc0002180.1_g000014 Rmu_sc0002180.1_g000015 Rmu_sc0002348.1_g000004 Rmu_sc0007942.1_g000001 Rmu_sc0042068.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149100 Rroxscaffold_3G00252690 Rroxscaffold_7G00158620
rosa_rugosa	Rorug02G0026500 Rorug04G0210700 Rorug04G0211100 Rorug06G0379300 Rorug07G0086400
rosa_samantha	Rh2AG072400 Rh2BG072800 Rh2CG074000 Rh2DG070800 Rh4AG267800 Rh4BG273900 Rh4BG274000 Rh4CG288100 Rh4DG270700 Rh4DG270800 Rh6AG493500 Rh6BG503200 Rh6CG508200 Rh6DG494300 Rh7AG216800 Rh7AG216900 Rh7BG213900 Rh7CG230300 Rh7DG224400 Rh7DG224500 Rh7DG224700
rosa_wichuraiana	Rw2G006030 Rw4G023220 Rw6G042940 Rw7G018790 Rw7G018800 Rw7G018820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	409
AcuI	CTGAAG	2 cut(s)	509, 633
AfaI	GTAC	2 cut(s)	105, 206
AflIII	ACRYGT	1 cut(s)	584
AgsI	TTSAA	4 cut(s)	80, 134, 190, 488
AjiI	CACGTC	1 cut(s)	587
AjnI	CCWGG	2 cut(s)	8, 417
AluBI	AGCT	8 cut(s)	202, 226, 323, 425, 449, 493, 542, 551
AluI	AGCT	8 cut(s)	202, 226, 323, 425, 449, 493, 542, 551
Alw26I	GTCTC	1 cut(s)	65
AlwI	GGATC	1 cut(s)	409
AlwNI	CAGNNNCTG	2 cut(s)	452, 545
AoxI	GGCC	1 cut(s)	138
ApeKI	GCWGC	7 cut(s)	119, 223, 320, 323, 449, 548, 629
AseI	ATTAAT	1 cut(s)	387
Asp700I	GAANNNNTTC	1 cut(s)	519
AspLEI	GCGC	1 cut(s)	606
AspS9I	GGNCC	1 cut(s)	138
AsuHPI	GGTGA	2 cut(s)	137, 142
BaeGI	GKGCMC	1 cut(s)	46
BarI	GAAGNNNNNNTAC	2 cut(s)	188, 220
BbvI	GCAGC	7 cut(s)	106, 235, 310, 332, 436, 560, 616
BccI	CCATC	1 cut(s)	640
BciT130I	CCWGG	2 cut(s)	10, 419
BclI	TGATCA	1 cut(s)	253
BcoDI	GTCTC	1 cut(s)	65
BfaI	CTAG	1 cut(s)	269
BfmI	CTRYAG	4 cut(s)	107, 297, 537, 546
BglI	GCCNNNNNGGC	1 cut(s)	332
BisI	GCNGC	7 cut(s)	120, 224, 321, 324, 450, 549, 630
BlsI	GCNGC	7 cut(s)	121, 225, 322, 325, 451, 550, 631
BmcAI	AGTACT	1 cut(s)	105
Bme1390I	CCNGG	2 cut(s)	10, 419
BmgBI	CACGTC	1 cut(s)	587
BmgT120I	GGNCC	1 cut(s)	138
BmrFI	CCNGG	2 cut(s)	10, 419
BmsI	GCATC	1 cut(s)	292
BpmI	CTGGAG	2 cut(s)	336, 537
BpuEI	CTTGAG	2 cut(s)	107, 328
BsaJI	CCNNGG	2 cut(s)	141, 375
BsaXI	ACNNNNNCTCC	2 cut(s)	526, 556
Bse118I	RCCGGY	1 cut(s)	122
Bse1I	ACTGG	4 cut(s)	39, 319, 554, 630
Bse3DI	GCAATG	1 cut(s)	342
BseBI	CCWGG	2 cut(s)	10, 419
BseDI	CCNNGG	2 cut(s)	141, 375
BseGI	GGATG	2 cut(s)	385, 472
BseMI	GCAATG	1 cut(s)	342
BseMII	CTCAG	2 cut(s)	495, 633
BseNI	ACTGG	4 cut(s)	39, 319, 554, 630
BseSI	GKGCMC	1 cut(s)	46
BseXI	GCAGC	7 cut(s)	106, 235, 310, 332, 436, 560, 616
BshFI	GGCC	1 cut(s)	140
BsiSI	CCGG	1 cut(s)	123
BslFI	GGGAC	1 cut(s)	548
BsmAI	GTCTC	1 cut(s)	65
BsmBI	CGTCTC	1 cut(s)	65
BsmFI	GGGAC	1 cut(s)	548
BsnI	GGCC	1 cut(s)	140
Bsp1286I	GDGCHC	1 cut(s)	46
Bsp143I	GATC	3 cut(s)	170, 253, 414
Bsp19I	CCATGG	1 cut(s)	375
BspANI	GGCC	1 cut(s)	140
BspCNI	CTCAG	2 cut(s)	496, 634
BspMAI	CTGCAG	1 cut(s)	550
BspPI	GGATC	1 cut(s)	409
BspQI	GCTCTTC	1 cut(s)	483
BsrDI	GCAATG	1 cut(s)	342
BsrFI	RCCGGY	1 cut(s)	122
BsrI	ACTGG	4 cut(s)	39, 319, 554, 630
BssAI	RCCGGY	1 cut(s)	122
BssECI	CCNNGG	2 cut(s)	141, 375
BssMI	GATC	3 cut(s)	170, 253, 414
BssT1I	CCWWGG	2 cut(s)	141, 375
Bst2UI	CCWGG	2 cut(s)	10, 419
Bst4CI	ACNGT	1 cut(s)	298
Bst6I	CTCTTC	2 cut(s)	185, 483
BstC8I	GCNNGC	2 cut(s)	531, 639
BstDEI	CTNAG	3 cut(s)	55, 504, 642
BstDSI	CCRYGG	1 cut(s)	375
BstF5I	GGATG	2 cut(s)	385, 472
BstHHI	GCGC	1 cut(s)	606
BstKTI	GATC	3 cut(s)	173, 256, 417
BstMAI	GTCTC	1 cut(s)	65
BstMBI	GATC	3 cut(s)	170, 253, 414
BstMWI	GCNNNNNNNGC	7 cut(s)	82, 220, 332, 539, 548, 638, 647
BstNI	CCWGG	2 cut(s)	10, 419
BstNSI	RCATGY	1 cut(s)	563
BstSCI	CCNGG	2 cut(s)	8, 417
BstSFI	CTRYAG	4 cut(s)	107, 297, 537, 546
BstSLI	GKGCMC	1 cut(s)	46
BstV1I	GCAGC	7 cut(s)	106, 235, 310, 332, 436, 560, 616
BstX2I	RGATCY	1 cut(s)	414
BstYI	RGATCY	1 cut(s)	414
BsuRI	GGCC	1 cut(s)	140
BtgI	CCRYGG	1 cut(s)	375
BtrI	CACGTC	1 cut(s)	587
BtsCI	GGATG	2 cut(s)	385, 472
BtsI	GCAGTG	1 cut(s)	606
BtsIMutI	CAGTG	3 cut(s)	46, 561, 606
Cac8I	GCNNGC	2 cut(s)	531, 639
CaiI	CAGNNNCTG	2 cut(s)	452, 545
CfoI	GCGC	1 cut(s)	606
Cfr10I	RCCGGY	1 cut(s)	122
Cfr13I	GGNCC	1 cut(s)	138
CseI	GACGC	1 cut(s)	82
Csp6I	GTAC	2 cut(s)	104, 205
CviAII	CATG	5 cut(s)	251, 328, 376, 406, 560
CviQI	GTAC	2 cut(s)	104, 205
DdeI	CTNAG	3 cut(s)	55, 504, 642
DpnI	GATC	3 cut(s)	172, 255, 416
DpnII	GATC	3 cut(s)	170, 253, 414
Eam1104I	CTCTTC	2 cut(s)	185, 483
EarI	CTCTTC	2 cut(s)	185, 483
Eco130I	CCWWGG	2 cut(s)	141, 375
Eco57I	CTGAAG	2 cut(s)	509, 633
EcoRII	CCWGG	2 cut(s)	8, 417
EcoT14I	CCWWGG	2 cut(s)	141, 375
ErhI	CCWWGG	2 cut(s)	141, 375
Esp3I	CGTCTC	1 cut(s)	65
FaeI	CATG	5 cut(s)	254, 331, 379, 409, 563
FaiI	YATR	8 cut(s)	179, 252, 329, 356, 377, 407, 561, 655
FalI	AAGNNNNNCTT	4 cut(s)	468, 500, 504, 536
FaqI	GGGAC	1 cut(s)	548
FatI	CATG	5 cut(s)	250, 327, 375, 405, 559
FbaI	TGATCA	1 cut(s)	253
Fnu4HI	GCNGC	7 cut(s)	120, 224, 321, 324, 450, 549, 630
FokI	GGATG	2 cut(s)	392, 479
Fsp4HI	GCNGC	7 cut(s)	120, 224, 321, 324, 450, 549, 630
FspBI	CTAG	1 cut(s)	269
GlaI	GCGC	1 cut(s)	605
GluI	GCNGC	7 cut(s)	120, 224, 321, 324, 450, 549, 630
GsuI	CTGGAG	2 cut(s)	336, 537
HaeIII	GGCC	1 cut(s)	140
HapII	CCGG	1 cut(s)	123
HgaI	GACGC	1 cut(s)	82
HhaI	GCGC	1 cut(s)	606
Hin1II	CATG	5 cut(s)	254, 331, 379, 409, 563
Hin6I	GCGC	1 cut(s)	604
HinP1I	GCGC	1 cut(s)	604
HincII	GTYRAC	1 cut(s)	432
HindII	GTYRAC	1 cut(s)	432
HindIII	AAGCTT	1 cut(s)	423
HinfI	GANTC	2 cut(s)	35, 246
HpaII	CCGG	1 cut(s)	123
HphI	GGTGA	2 cut(s)	137, 142
Hpy166II	GTNNAC	4 cut(s)	6, 150, 367, 432
Hpy188I	TCNGA	2 cut(s)	245, 258
Hpy8I	GTNNAC	4 cut(s)	6, 150, 367, 432
HpyAV	CCTTC	6 cut(s)	109, 266, 325, 491, 563, 567
HpyCH4III	ACNGT	1 cut(s)	298
HpyCH4IV	ACGT	1 cut(s)	586
HpyCH4V	TGCA	6 cut(s)	278, 340, 533, 548, 559, 637
HpyF10VI	GCNNNNNNNGC	7 cut(s)	82, 220, 332, 539, 548, 638, 647
HpyF3I	CTNAG	3 cut(s)	55, 504, 642
HpySE526I	ACGT	1 cut(s)	586
Hsp92II	CATG	5 cut(s)	254, 331, 379, 409, 563
HspAI	GCGC	1 cut(s)	604
Ksp22I	TGATCA	1 cut(s)	253
Kzo9I	GATC	3 cut(s)	170, 253, 414
LguI	GCTCTTC	1 cut(s)	483
LmnI	GCTCC	3 cut(s)	317, 547, 556
Lsp1109I	GCAGC	7 cut(s)	106, 235, 310, 332, 436, 560, 616
LweI	GCATC	1 cut(s)	292
MaeI	CTAG	1 cut(s)	269
MaeII	ACGT	1 cut(s)	586
MalI	GATC	3 cut(s)	172, 255, 416
MboI	GATC	3 cut(s)	170, 253, 414
MboII	GAAGA	8 cut(s)	124, 202, 208, 500, 515, 524, 626, 629
MfeI	CAATTG	1 cut(s)	438
MflI	RGATCY	1 cut(s)	414
MhlI	GDGCHC	1 cut(s)	46
MluCI	AATT	2 cut(s)	438, 470
MmeI	TCCRAC	2 cut(s)	262, 489
MnlI	CCTC	2 cut(s)	186, 457
MroXI	GAANNNNTTC	1 cut(s)	519
MseI	TTAA	2 cut(s)	65, 387
MspA1I	CMGCKG	2 cut(s)	323, 449
MspI	CCGG	1 cut(s)	123
MspR9I	CCNGG	2 cut(s)	10, 419
MunI	CAATTG	1 cut(s)	438
MvaI	CCWGG	2 cut(s)	10, 419
MwoI	GCNNNNNNNGC	7 cut(s)	82, 220, 332, 539, 548, 638, 647
NcoI	CCATGG	1 cut(s)	375
NdeII	GATC	3 cut(s)	170, 253, 414
NlaIII	CATG	5 cut(s)	254, 331, 379, 409, 563
NspI	RCATGY	1 cut(s)	563
PciSI	GCTCTTC	1 cut(s)	483
PdmI	GAANNNNTTC	1 cut(s)	519
PfeI	GAWTC	2 cut(s)	35, 246
PfoI	TCCNGGA	1 cut(s)	417
PkrI	GCNGC	7 cut(s)	121, 225, 322, 325, 451, 550, 631
PshBI	ATTAAT	1 cut(s)	387
Psp6I	CCWGG	2 cut(s)	8, 417
PspGI	CCWGG	2 cut(s)	8, 417
PspPI	GGNCC	1 cut(s)	138
PstI	CTGCAG	1 cut(s)	550
PstNI	CAGNNNCTG	2 cut(s)	452, 545
PsuI	RGATCY	1 cut(s)	414
PvuII	CAGCTG	2 cut(s)	323, 449
RsaI	GTAC	2 cut(s)	105, 206
RsaNI	GTAC	2 cut(s)	104, 205
SapI	GCTCTTC	1 cut(s)	483
SaqAI	TTAA	2 cut(s)	65, 387
SatI	GCNGC	7 cut(s)	120, 224, 321, 324, 450, 549, 630
Sau3AI	GATC	3 cut(s)	170, 253, 414
Sau96I	GGNCC	1 cut(s)	138
ScaI	AGTACT	1 cut(s)	105
ScrFI	CCNGG	2 cut(s)	10, 419
SduI	GDGCHC	1 cut(s)	46
SfaNI	GCATC	1 cut(s)	292
SfcI	CTRYAG	4 cut(s)	107, 297, 537, 546
SmlI	CTYRAG	2 cut(s)	86, 307
SmoI	CTYRAG	2 cut(s)	86, 307
Sse9I	AATT	2 cut(s)	438, 470
SspMI	CTAG	1 cut(s)	269
StyD4I	CCNGG	2 cut(s)	8, 417
StyI	CCWWGG	2 cut(s)	141, 375
TaaI	ACNGT	1 cut(s)	298
TaiI	ACGT	1 cut(s)	589
TaqII	GACCGA	1 cut(s)	413
TasI	AATT	2 cut(s)	438, 470
TatI	WGTACW	1 cut(s)	103
TfiI	GAWTC	2 cut(s)	35, 246
Tru1I	TTAA	2 cut(s)	65, 387
Tru9I	TTAA	2 cut(s)	65, 387
TscAI	CASTG	3 cut(s)	46, 561, 613
TseI	GCWGC	7 cut(s)	119, 223, 320, 323, 449, 548, 629
TspDTI	ATGAA	4 cut(s)	344, 422, 483, 636
TspGWI	ACGGA	1 cut(s)	47
TspRI	CASTG	3 cut(s)	46, 561, 613
VspI	ATTAAT	1 cut(s)	387
XceI	RCATGY	1 cut(s)	563
XmnI	GAANNNNTTC	1 cut(s)	519
XspI	CTAG	1 cut(s)	269
ZrmI	AGTACT	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.