RchiOBHm_Chr4g0426411

Belongs to the SNF7 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000584
Physical Location & Seq
Forward (+)
51890017 .. 51890199
183 bp
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UTR
Exon/CDS
Intron
PRQ39546

Sequence Viewer

Length: 183 bp
ATGTTCGAAAAGCAAATAGAGAAAGTTGGAAATTTCCGATTGCGAATCCATAATCAGATGATGTTCCTACAAGGTGAAAAAATGAAGGCAATGCAGATCCAGGAAGCCTTGTCAACTCCAATTGGTTCAGCTGCTGATTTTGATGATGATGCATTGGTAACAGAACTTGAAGAGTTGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 ko04217 map04144 map04217
Pfam Domains
Protein Families
Snf7

Protein Analysis

60

Amino Acids

6.9

Weight (kDa)

4.51

Isoelectric Point (pI)

40.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Snf7 PF03357 16 - 59 3.8e-06 Snf7
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000584)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19830 AT2G19830 AT4G29160 AT4G29160 AT4G29160
fragaria_vesca FvH4_1g06720 FvH4_1g06720 FvH4_1g06720 FvH4_2g32330 FvH4_2g32330 FvH4_4g20950
malus_domestica MD02G1072100.v1.1 MD08G1074600.v1.1 MD15G1062300.v1.1 MD15G1201900.v1.1
prunus_persica Prupe.1G416300_v2.0.a1 Prupe.1G416300_v2.0.a1 Prupe.7G215600_v2.0.a1 Prupe.7G215600_v2.0.a1 Prupe.7G215600_v2.0.a1
pyrus_communis pycom02g05610 pycom08g06160 pycom15g05890 pycom15g05900 pycom15g17920
rosa_chinensis RchiOBHm_Chr2g0092461 RchiOBHm_Chr4g0426411 RchiOBHm_Chr4g0426421 RchiOBHm_Chr6g0310361 RchiOBHm_Chr7g0204861 RchiOBHm_Chr7g0204871 RchiOBHm_Chr7g0204891
rosa_laevigata RLG00000003423 RLG00000003426 RLG00000007295 RLG00000007296 RLG00000010489 RLG00000016312
rosa_multiflora Rmu_co8485477.1_g000001 Rmu_sc0001361.1_g000025 Rmu_sc0002180.1_g000006 Rmu_sc0002180.1_g000014 Rmu_sc0002180.1_g000015 Rmu_sc0002348.1_g000004 Rmu_sc0007942.1_g000001 Rmu_sc0042068.1_g000001
rosa_roxburghii Rroxscaffold_2G00149100 Rroxscaffold_3G00252690 Rroxscaffold_7G00158620
rosa_rugosa Rorug02G0026500 Rorug04G0210700 Rorug04G0211100 Rorug06G0379300 Rorug07G0086400
rosa_samantha Rh2AG072400 Rh2BG072800 Rh2CG074000 Rh2DG070800 Rh4AG267800 Rh4BG273900 Rh4BG274000 Rh4CG288100 Rh4DG270700 Rh4DG270800 Rh6AG493500 Rh6BG503200 Rh6CG508200 Rh6DG494300 Rh7AG216800 Rh7AG216900 Rh7BG213900 Rh7CG230300 Rh7DG224400 Rh7DG224500 Rh7DG224700
rosa_wichuraiana Rw2G006030 Rw4G023220 Rw6G042940 Rw7G018790 Rw7G018800 Rw7G018820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 91
AcsI RAATTY 1 cut(s) 31
AgsI TTSAA 1 cut(s) 170
AjnI CCWGG 1 cut(s) 99
AluBI AGCT 1 cut(s) 131
AluI AGCT 1 cut(s) 131
AlwI GGATC 1 cut(s) 91
AlwNI CAGNNNCTG 1 cut(s) 134
ApeKI GCWGC 1 cut(s) 131
ApoI RAATTY 1 cut(s) 31
AsuHPI GGTGA 1 cut(s) 86
AsuII TTCGAA 1 cut(s) 6
BbvI GCAGC 1 cut(s) 118
BciT130I CCWGG 1 cut(s) 101
BisI GCNGC 1 cut(s) 132
BlsI GCNGC 1 cut(s) 133
Bme1390I CCNGG 1 cut(s) 101
BmrFI CCNGG 1 cut(s) 101
BmsI GCATC 1 cut(s) 139
Bpu14I TTCGAA 1 cut(s) 6
Bse3DI GCAATG 1 cut(s) 96
BseBI CCWGG 1 cut(s) 101
BseMI GCAATG 1 cut(s) 96
BseXI GCAGC 1 cut(s) 118
Bsp119I TTCGAA 1 cut(s) 6
Bsp143I GATC 1 cut(s) 96
BspPI GGATC 1 cut(s) 91
BspT104I TTCGAA 1 cut(s) 6
BsrDI GCAATG 1 cut(s) 96
BssMI GATC 1 cut(s) 96
Bst2UI CCWGG 1 cut(s) 101
Bst6I CTCTTC 1 cut(s) 165
BstBI TTCGAA 1 cut(s) 6
BstKTI GATC 1 cut(s) 99
BstMBI GATC 1 cut(s) 96
BstNI CCWGG 1 cut(s) 101
BstSCI CCNGG 1 cut(s) 99
BstV1I GCAGC 1 cut(s) 118
BstX2I RGATCY 1 cut(s) 96
BstYI RGATCY 1 cut(s) 96
CaiI CAGNNNCTG 1 cut(s) 134
CviJI RGCY 2 cut(s) 107, 131
CviKI_1 RGCY 2 cut(s) 107, 131
DpnI GATC 1 cut(s) 98
DpnII GATC 1 cut(s) 96
Eam1104I CTCTTC 1 cut(s) 165
EarI CTCTTC 1 cut(s) 165
EcoRII CCWGG 1 cut(s) 99
EcoT22I ATGCAT 1 cut(s) 154
FaiI YATR 1 cut(s) 51
Fnu4HI GCNGC 1 cut(s) 132
Fsp4HI GCNGC 1 cut(s) 132
GluI GCNGC 1 cut(s) 132
HincII GTYRAC 1 cut(s) 114
HindII GTYRAC 1 cut(s) 114
HinfI GANTC 1 cut(s) 45
HphI GGTGA 1 cut(s) 86
Hpy166II GTNNAC 1 cut(s) 114
Hpy188I TCNGA 2 cut(s) 38, 57
Hpy8I GTNNAC 1 cut(s) 114
HpyAV CCTTC 1 cut(s) 79
HpyCH4V TGCA 2 cut(s) 94, 152
Kzo9I GATC 1 cut(s) 96
LpnPI CCDG 2 cut(s) 86, 113
Lsp1109I GCAGC 1 cut(s) 118
LweI GCATC 1 cut(s) 139
MaeIII GTNAC 1 cut(s) 157
MalI GATC 1 cut(s) 98
MboI GATC 1 cut(s) 96
MboII GAAGA 1 cut(s) 182
MfeI CAATTG 1 cut(s) 120
MflI RGATCY 1 cut(s) 96
MluCI AATT 2 cut(s) 31, 120
MmeI TCCRAC 2 cut(s) 7, 156
Mph1103I ATGCAT 1 cut(s) 154
MspA1I CMGCKG 1 cut(s) 131
MspR9I CCNGG 1 cut(s) 101
MunI CAATTG 1 cut(s) 120
MvaI CCWGG 1 cut(s) 101
NdeII GATC 1 cut(s) 96
NsiI ATGCAT 1 cut(s) 154
NspV TTCGAA 1 cut(s) 6
PfeI GAWTC 1 cut(s) 45
PfoI TCCNGGA 1 cut(s) 99
PkrI GCNGC 1 cut(s) 133
Psp6I CCWGG 1 cut(s) 99
PspGI CCWGG 1 cut(s) 99
PstNI CAGNNNCTG 1 cut(s) 134
PsuI RGATCY 1 cut(s) 96
PvuII CAGCTG 1 cut(s) 131
SatI GCNGC 1 cut(s) 132
Sau3AI GATC 1 cut(s) 96
ScrFI CCNGG 1 cut(s) 101
SetI ASST 2 cut(s) 76, 133
SfaNI GCATC 1 cut(s) 139
SfuI TTCGAA 1 cut(s) 6
SgeI CNNG 5 cut(s) 83, 112, 113, 121, 179
Sse9I AATT 2 cut(s) 31, 120
StyD4I CCNGG 1 cut(s) 99
TaqI TCGA 1 cut(s) 6
TasI AATT 2 cut(s) 31, 120
TfiI GAWTC 1 cut(s) 45
TseI GCWGC 1 cut(s) 131
TspDTI ATGAA 1 cut(s) 98
XapI RAATTY 1 cut(s) 31
Zsp2I ATGCAT 1 cut(s) 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.