AT2G22900

Galactosyl transferase GMA12 MNN10 family protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Reverse (-)
9744146 .. 9746435
2290 bp
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UTR
Exon/CDS
Intron
AT2G22900.1

Sequence Viewer

Length: 1350 bp
ATGGTCTCGCCTGAGACATCATCATCACATTACCAATCATCTCCAATGGCAAAATACGCCGGAACAAGAACCAGACCGGTTGTATGTATCTCCGACGTCGTTCTCTTCCTTGGCGGAGCTTTCATGTCACTAATCCTCGTCTGGTCTTTCTTCTCCTTCTCTTCAATCTCCCCAAATCTCACCGTGAAAAACGAAGAATCCTCCAACAAATGTTCTTCAGGAATCGATATGAGCCAAGATCCAACCGACCCGGTTTACTACGACGACCCGGATCTAACCTACACAATCGAAAAACCGGTTAAAAACTGGGACGAGAAACGAAGACGTTGGTTAAATCTACACCCTTCGTTTATCCCCGGAGCTGAGAATCGTACGGTTATGGTAACAGGATCACAATCTGCGCCGTGTAAAAACCCAATCGGAGATCATTTGTTGCTTCGATTTTTTAAGAACAAAGTTGATTATTGTCGGATCCATGGTCATGATATATTCTATAGTAACGCTCTTCTTCATCCGAAGATGAATTCTTATTGGGCGAAACTTCCGGCGGTTAAAGCGGCGATGATTGCTCATCCTGAGGCGGAGTGGATCTGGTGGGTTGATTCTGATGCTTTGTTTACGGATATGGATTTTACGCCGCCGTGGCGACGGTATAAGGAGCATAATCTTGTTGTTCATGGTTGGCCGGGAGTGATTTATAATGATCGGAGCTGGACGGCGTTAAACGCCGGAGTTTTTCTCATTAGGAATTGTCAGTGGTCTATGGAACTCATTGACACGTGGACAGGTATGGGACCAGTGAGTCCAGAGTACGCAAAATGGGGACAAATCCAACGGTCAATATTCAAAGACAAACTCTTCCCAGAGTCAGATGATCAAACGGCTCTGCTTTACTTACTCTACAAACACAGAGAAGTGTATTATCCAAAGATATACCTCGAAGGAGACTTTTATTTCGAAGGATATTGGTTAGAGATCGTACCGGGTTTATCCAACGTAACGGAACGGTATCTGGAGATGGAAAGAGAAGACGCCACGTTGCGTAGACGACACGCAGAGAAAGTGAGCGAACGATACGCTGCGTTTCGTGAGGAACGGTTTTTAAAAGGAGAAAGAGGCGGGAAAGGAAGCAAACGGAGACCGTTCGTGACGCATTTTACGGGATGTCAACCTTGTAGTGGTGATCATAACAAGATGTACGATGGTGACACGTGTTGGAATGGGATGATCAAAGCCATTAATTTCGCTGATAATCAAGTGATGCGTAAATATGGTTTCGTACACTCGGATCTAGGCAAGACTTCCCCTCTTCAACCTGTACCGTTCGATTATCCTGATGAGCCTTGGTGA

Protein Analysis

449

Amino Acids

52.07

Weight (kDa)

6.54

Isoelectric Point (pI)

51.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_34 PF05637 122 - 395 1e-66 galactosyl transferase GMA12/MNN10 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 699
AasI GACNNNNNNGTC 1 cut(s) 801
AatII GACGTC 1 cut(s) 99
AccI GTMKAC 1 cut(s) 1045
AciI CCGC 6 cut(s) 114, 548, 557, 581, 638, 1119
AclWI GGATC 7 cut(s) 233, 279, 397, 466, 479, 596, 1296
AcoI YGGCCR 1 cut(s) 683
AcsI RAATTY 1 cut(s) 523
AcuI CTGAAG 1 cut(s) 201
AcvI CACGTG 2 cut(s) 780, 1212
AcyI GRCGYC 2 cut(s) 96, 1032
AfaI GTAC 6 cut(s) 373, 812, 981, 1199, 1281, 1320
AfiI CCNNNNNNNGG 1 cut(s) 1178
AflIII ACRYGT 3 cut(s) 777, 1209, 1211
AgeI ACCGGT 2 cut(s) 76, 295
AgsI TTSAA 3 cut(s) 165, 847, 1313
AluBI AGCT 3 cut(s) 119, 362, 711
AluI AGCT 3 cut(s) 119, 362, 711
Alw26I GTCTC 4 cut(s) 8, 10, 939, 1132
AlwI GGATC 7 cut(s) 233, 279, 397, 466, 479, 596, 1296
AoxI GGCC 1 cut(s) 683
ApeKI GCWGC 1 cut(s) 1079
ApoI RAATTY 1 cut(s) 523
ArsI GACNNNNNNTTYG 2 cut(s) 938, 970
AseI ATTAAT 1 cut(s) 1239
AsiGI ACCGGT 2 cut(s) 76, 295
AspLEI GCGC 1 cut(s) 403
AspS9I GGNCC 1 cut(s) 794
AsuC2I CCSGG 5 cut(s) 251, 269, 357, 687, 984
AsuHPI GGTGA 3 cut(s) 172, 1193, 1217
AsuII TTCGAA 1 cut(s) 957
AvaII GGWCC 1 cut(s) 794
AxyI CCTNAGG 1 cut(s) 576
BamHI GGATCC 1 cut(s) 471
BbrPI CACGTG 2 cut(s) 780, 1212
BbsI GAAGAC 2 cut(s) 328, 1035
BbvI GCAGC 1 cut(s) 1066
BccI CCATC 2 cut(s) 1012, 1196
BceAI ACGGC 4 cut(s) 388, 625, 732, 897
BclI TGATCA 3 cut(s) 874, 1183, 1227
BcnI CCSGG 5 cut(s) 251, 269, 357, 687, 984
BcoDI GTCTC 4 cut(s) 8, 10, 939, 1132
BfaI CTAG 1 cut(s) 1292
BfmI CTRYAG 1 cut(s) 493
BglI GCCNNNNNGGC 1 cut(s) 643
BisI GCNGC 3 cut(s) 558, 638, 1080
BlsI GCNGC 3 cut(s) 559, 639, 1081
Bme1390I CCNGG 5 cut(s) 251, 269, 357, 687, 984
Bme18I GGWCC 1 cut(s) 794
BmgT120I GGNCC 1 cut(s) 794
BmiI GGNNCC 2 cut(s) 473, 795
BmrFI CCNGG 5 cut(s) 251, 269, 357, 687, 984
BmrI ACTGGG 1 cut(s) 316
BmsI GCATC 2 cut(s) 598, 1251
BmuI ACTGGG 1 cut(s) 316
BpiI GAAGAC 2 cut(s) 328, 1035
BplI GAGNNNNNCTC 2 cut(s) 723, 755
BpmI CTGGAG 1 cut(s) 1034
Bpu14I TTCGAA 1 cut(s) 957
BpuMI CCSGG 5 cut(s) 251, 269, 357, 687, 984
Bsa29I ATCGAT 1 cut(s) 225
BsaAI YACGTR 2 cut(s) 780, 1212
BsaBI GATNNNNATC 1 cut(s) 394
BsaHI GRCGYC 2 cut(s) 96, 1032
BsaI GGTCTC 2 cut(s) 10, 1132
BsaJI CCNNGG 5 cut(s) 109, 355, 475, 641, 1343
BsaWI WCCGGW 2 cut(s) 76, 295
Bsc4I CCNNNNNNNGG 1 cut(s) 1178
Bse118I RCCGGY 2 cut(s) 76, 295
Bse1I ACTGG 2 cut(s) 311, 797
Bse21I CCTNAGG 1 cut(s) 576
Bse8I GATNNNNATC 1 cut(s) 394
BseCI ATCGAT 1 cut(s) 225
BseDI CCNNGG 5 cut(s) 109, 355, 475, 641, 1343
BseGI GGATG 4 cut(s) 511, 571, 1169, 1230
BseJI GATNNNNATC 1 cut(s) 394
BseLI CCNNNNNNNGG 1 cut(s) 1178
BseMII CTCAG 2 cut(s) 354, 567
BseNI ACTGG 2 cut(s) 311, 797
BseXI GCAGC 1 cut(s) 1066
BshFI GGCC 1 cut(s) 685
BshTI ACCGGT 2 cut(s) 76, 295
BshVI ATCGAT 1 cut(s) 225
BsiWI CGTACG 1 cut(s) 371
BslFI GGGAC 3 cut(s) 323, 807, 837
BslI CCNNNNNNNGG 1 cut(s) 1178
BsmAI GTCTC 4 cut(s) 8, 10, 939, 1132
BsmFI GGGAC 3 cut(s) 323, 807, 837
BsnI GGCC 1 cut(s) 685
Bso31I GGTCTC 2 cut(s) 10, 1132
Bsp119I TTCGAA 1 cut(s) 957
Bsp19I CCATGG 1 cut(s) 475
BspACI CCGC 6 cut(s) 114, 548, 557, 581, 638, 1119
BspANI GGCC 1 cut(s) 685
BspCNI CTCAG 3 cut(s) 4, 355, 568
BspDI ATCGAT 1 cut(s) 225
BspHI TCATGA 1 cut(s) 481
BspLI GGNNCC 2 cut(s) 473, 795
BspPI GGATC 7 cut(s) 233, 279, 397, 466, 479, 596, 1296
BspQI GCTCTTC 1 cut(s) 510
BspT104I TTCGAA 1 cut(s) 957
BspTNI GGTCTC 2 cut(s) 10, 1132
BsrFI RCCGGY 2 cut(s) 76, 295
BsrI ACTGG 2 cut(s) 311, 797
BssAI RCCGGY 2 cut(s) 76, 295
BssECI CCNNGG 5 cut(s) 109, 355, 475, 641, 1343
BssNI GRCGYC 2 cut(s) 96, 1032
BssT1I CCWWGG 3 cut(s) 109, 475, 1343
Bst4CI ACNGT 8 cut(s) 184, 376, 651, 837, 1008, 1098, 1143, 1323
Bst6I CTCTTC 5 cut(s) 110, 166, 510, 863, 1314
BstACI GRCGYC 2 cut(s) 96, 1032
BstBAI YACGTR 2 cut(s) 780, 1212
BstBI TTCGAA 1 cut(s) 957
BstDEI CTNAG 3 cut(s) 12, 363, 576
BstDSI CCRYGG 2 cut(s) 475, 641
BstF5I GGATG 4 cut(s) 511, 571, 1169, 1230
BstHHI GCGC 1 cut(s) 403
BstMAI GTCTC 4 cut(s) 8, 10, 939, 1132
BstMWI GCNNNNNNNGC 5 cut(s) 56, 554, 566, 643, 725
BstSCI CCNGG 5 cut(s) 249, 267, 355, 685, 982
BstSFI CTRYAG 1 cut(s) 493
BstV1I GCAGC 1 cut(s) 1066
BstV2I GAAGAC 2 cut(s) 328, 1035
BstX2I RGATCY 5 cut(s) 238, 271, 471, 588, 1288
BstYI RGATCY 5 cut(s) 238, 271, 471, 588, 1288
Bsu15I ATCGAT 1 cut(s) 225
Bsu36I CCTNAGG 1 cut(s) 576
BsuRI GGCC 1 cut(s) 685
BsuTUI ATCGAT 1 cut(s) 225
BtgI CCRYGG 2 cut(s) 475, 641
BtgZI GCGATG 1 cut(s) 575
BtsCI GGATG 4 cut(s) 511, 571, 1169, 1230
BtsIMutI CAGTG 2 cut(s) 761, 804
CciI TCATGA 1 cut(s) 481
CfoI GCGC 1 cut(s) 403
Cfr10I RCCGGY 2 cut(s) 76, 295
Cfr13I GGNCC 1 cut(s) 794
ClaI ATCGAT 1 cut(s) 225
CseI GACGC 2 cut(s) 1040, 1159
Csp6I GTAC 6 cut(s) 372, 811, 980, 1198, 1280, 1319
CspAI ACCGGT 2 cut(s) 76, 295
CviAII CATG 4 cut(s) 124, 476, 482, 677
CviJI RGCY 8 cut(s) 119, 234, 362, 685, 711, 884, 1235, 1342
CviKI_1 RGCY 8 cut(s) 119, 234, 362, 685, 711, 884, 1235, 1342
CviQI GTAC 6 cut(s) 372, 811, 980, 1198, 1280, 1319
DdeI CTNAG 3 cut(s) 12, 363, 576
DraI TTTAAA 1 cut(s) 1104
DrdI GACNNNNNNGTC 1 cut(s) 801
DseDI GACNNNNNNGTC 1 cut(s) 801
EaeI YGGCCR 1 cut(s) 683
Eam1104I CTCTTC 5 cut(s) 110, 166, 510, 863, 1314
EarI CTCTTC 5 cut(s) 110, 166, 510, 863, 1314
EciI GGCGGA 2 cut(s) 129, 596
Eco130I CCWWGG 3 cut(s) 109, 475, 1343
Eco31I GGTCTC 2 cut(s) 10, 1132
Eco47I GGWCC 1 cut(s) 794
Eco57I CTGAAG 1 cut(s) 201
Eco72I CACGTG 2 cut(s) 780, 1212
Eco81I CCTNAGG 1 cut(s) 576
EcoRI GAATTC 1 cut(s) 523
EcoT14I CCWWGG 3 cut(s) 109, 475, 1343
ErhI CCWWGG 3 cut(s) 109, 475, 1343
FaeI CATG 4 cut(s) 127, 479, 485, 680
FaqI GGGAC 3 cut(s) 323, 807, 837
FatI CATG 4 cut(s) 123, 475, 481, 676
FauI CCCGC 1 cut(s) 1112
FbaI TGATCA 3 cut(s) 874, 1183, 1227
FblI GTMKAC 1 cut(s) 1045
Fnu4HI GCNGC 3 cut(s) 558, 638, 1080
FokI GGATG 4 cut(s) 498, 558, 1176, 1237
Fsp4HI GCNGC 3 cut(s) 558, 638, 1080
FspBI CTAG 1 cut(s) 1292
GlaI GCGC 1 cut(s) 402
GluI GCNGC 3 cut(s) 558, 638, 1080
GsuI CTGGAG 1 cut(s) 1034
HaeIII GGCC 1 cut(s) 685
HgaI GACGC 2 cut(s) 1040, 1159
HhaI GCGC 1 cut(s) 403
Hin1I GRCGYC 2 cut(s) 96, 1032
Hin1II CATG 4 cut(s) 127, 479, 485, 680
Hin6I GCGC 1 cut(s) 401
HinP1I GCGC 1 cut(s) 401
HincII GTYRAC 1 cut(s) 1169
HindII GTYRAC 1 cut(s) 1169
HinfI GANTC 6 cut(s) 197, 222, 367, 602, 802, 866
HphI GGTGA 3 cut(s) 172, 1193, 1217
Hpy166II GTNNAC 6 cut(s) 256, 618, 783, 1046, 1169, 1282
Hpy188I TCNGA 8 cut(s) 94, 422, 471, 516, 607, 708, 871, 1288
Hpy188III TCNNGA 8 cut(s) 219, 482, 575, 806, 1013, 1088, 1147, 1334
Hpy8I GTNNAC 6 cut(s) 256, 618, 783, 1046, 1169, 1282
Hpy99I CGWCG 4 cut(s) 98, 101, 266, 651
HpyAV CCTTC 4 cut(s) 166, 354, 935, 953
HpyCH4III ACNGT 8 cut(s) 184, 376, 651, 837, 1008, 1098, 1143, 1323
HpyCH4IV ACGT 6 cut(s) 96, 325, 779, 996, 1037, 1211
HpyF10VI GCNNNNNNNGC 5 cut(s) 56, 554, 566, 643, 725
HpyF3I CTNAG 3 cut(s) 12, 363, 576
HpySE526I ACGT 6 cut(s) 96, 325, 779, 996, 1037, 1211
Hsp92I GRCGYC 2 cut(s) 96, 1032
Hsp92II CATG 4 cut(s) 127, 479, 485, 680
HspAI GCGC 1 cut(s) 401
Ksp22I TGATCA 3 cut(s) 874, 1183, 1227
LguI GCTCTTC 1 cut(s) 510
LmnI GCTCC 4 cut(s) 116, 359, 658, 708
Lsp1109I GCAGC 1 cut(s) 1066
LweI GCATC 2 cut(s) 598, 1251
MaeI CTAG 1 cut(s) 1292
MaeII ACGT 6 cut(s) 96, 325, 779, 996, 1037, 1211
MaeIII GTNAC 6 cut(s) 126, 382, 497, 997, 1147, 1205
MflI RGATCY 5 cut(s) 238, 271, 471, 588, 1288
MluCI AATT 3 cut(s) 523, 748, 1240
MlyI GAGTC 2 cut(s) 811, 875
MmeI TCCRAC 7 cut(s) 117, 228, 266, 449, 856, 1017, 1196
MnlI CCTC 7 cut(s) 146, 211, 571, 947, 1084, 1109, 1317
MseI TTAA 7 cut(s) 300, 332, 447, 552, 722, 1103, 1239
MslI CAYNNNNRTG 1 cut(s) 480
MspR9I CCNGG 5 cut(s) 251, 269, 357, 687, 984
MwoI GCNNNNNNNGC 5 cut(s) 56, 554, 566, 643, 725
NciI CCSGG 5 cut(s) 251, 269, 357, 687, 984
NcoI CCATGG 1 cut(s) 475
NlaIII CATG 4 cut(s) 127, 479, 485, 680
NlaIV GGNNCC 2 cut(s) 473, 795
NmuCI GTSAC 3 cut(s) 126, 1147, 1205
NspV TTCGAA 1 cut(s) 957
PagI TCATGA 1 cut(s) 481
PciSI GCTCTTC 1 cut(s) 510
PfeI GAWTC 4 cut(s) 197, 222, 367, 602
Pfl23II CGTACG 1 cut(s) 371
PinAI ACCGGT 2 cut(s) 76, 295
PkrI GCNGC 3 cut(s) 559, 639, 1081
PleI GAGTC 2 cut(s) 810, 874
PmaCI CACGTG 2 cut(s) 780, 1212
PmlI CACGTG 2 cut(s) 780, 1212
PpsI GAGTC 2 cut(s) 810, 874
Ppu21I YACGTR 2 cut(s) 780, 1212
PshBI ATTAAT 1 cut(s) 1239
PsiI TTATAA 1 cut(s) 699
PspCI CACGTG 2 cut(s) 780, 1212
PspLI CGTACG 1 cut(s) 371
PspN4I GGNNCC 2 cut(s) 473, 795
PspPI GGNCC 1 cut(s) 794
PsuI RGATCY 5 cut(s) 238, 271, 471, 588, 1288
RsaI GTAC 6 cut(s) 373, 812, 981, 1199, 1281, 1320
RsaNI GTAC 6 cut(s) 372, 811, 980, 1198, 1280, 1319
RseI CAYNNNNRTG 1 cut(s) 480
SapI GCTCTTC 1 cut(s) 510
SaqAI TTAA 7 cut(s) 300, 332, 447, 552, 722, 1103, 1239
SatI GCNGC 3 cut(s) 558, 638, 1080
Sau96I GGNCC 1 cut(s) 794
SchI GAGTC 2 cut(s) 811, 875
ScrFI CCNGG 5 cut(s) 251, 269, 357, 687, 984
SfaNI GCATC 2 cut(s) 598, 1251
SfcI CTRYAG 1 cut(s) 493
SfuI TTCGAA 1 cut(s) 957
SinI GGWCC 1 cut(s) 794
SmiMI CAYNNNNRTG 1 cut(s) 480
Sse9I AATT 3 cut(s) 523, 748, 1240
SsiI CCGC 6 cut(s) 114, 548, 557, 581, 638, 1119
SspI AATATT 1 cut(s) 843
SspMI CTAG 1 cut(s) 1292
StyD4I CCNGG 5 cut(s) 249, 267, 355, 685, 982
StyI CCWWGG 3 cut(s) 109, 475, 1343
TaaI ACNGT 8 cut(s) 184, 376, 651, 837, 1008, 1098, 1143, 1323
TaiI ACGT 6 cut(s) 99, 328, 782, 999, 1040, 1214
TaqI TCGA 6 cut(s) 225, 288, 439, 939, 957, 1326
TasI AATT 3 cut(s) 523, 748, 1240
TauI GCSGC 2 cut(s) 560, 640
TfiI GAWTC 4 cut(s) 197, 222, 367, 602
Tru1I TTAA 7 cut(s) 300, 332, 447, 552, 722, 1103, 1239
Tru9I TTAA 7 cut(s) 300, 332, 447, 552, 722, 1103, 1239
TscAI CASTG 2 cut(s) 761, 804
TseFI GTSAC 3 cut(s) 126, 1147, 1205
TseI GCWGC 1 cut(s) 1079
Tsp45I GTSAC 3 cut(s) 126, 1147, 1205
TspDTI ATGAA 4 cut(s) 112, 500, 536, 665
TspGWI ACGGA 3 cut(s) 635, 1016, 1150
TspRI CASTG 2 cut(s) 761, 804
VpaK11BI GGWCC 1 cut(s) 794
VspI ATTAAT 1 cut(s) 1239
XapI RAATTY 1 cut(s) 523
XmiI GTMKAC 1 cut(s) 1045
XspI CTAG 1 cut(s) 1292
ZraI GACGTC 1 cut(s) 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.