Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001277

Physical Location & Seq

Genomic Coordinates Forward (+)

17948433 .. 17948844

Gene Structure 412 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G38310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGCAATTAGACCCTCCCGAGCCCGGTTTTTACGACGATCCGGATCTAAGCTACTCGATCGAGAAATCAATCACAAACTGGGACGAGAAACGGCACGAATGGTTTAAATCACACCCTTCATTCAAACCCGGTTCAGAAAACCGGATCTTAATGGTAACCGGTTCACAATCCTCGCCGTGTAAAAACCCAATCGGAGACCATTTGTTACTCCTCCGATGTTTCAAAAACAAAGTCGATTACGCTAGAATCCATGGTCACGACATCTTCTACAGCAATTCTCTTCTTCATCCGAAGATGAATTCGTATTGGGCGAAACTTCCGGTGGTTAAAGCTGCGATGCTTGCTCACCCATTTATGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000271 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0006080 GO:0007275 GO:0008150 GO:0008152 GO:0008378 GO:0009058 GO:0009059 GO:0009791 GO:0009987 GO:0010154 GO:0010191 GO:0010192 GO:0010214 GO:0010392 GO:0012505 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0022414 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051069 GO:0051070 GO:0061458 GO:0071704 GO:0097708 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_34

Protein Analysis

120

Amino Acids

13.9

Weight (kDa)

7.05

Isoelectric Point (pI)

40.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_34	PF05637	46 - 117	7.5e-21	galactosyl transferase GMA12/MNN10 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0001277)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22900 AT4G37690 AT4G38310
fragaria_vesca	FvH4_1g17940 FvH4_1g17941 FvH4_1g17941 FvH4_1g17941 FvH4_3g15850 FvH4_3g15870
malus_domestica	MD02G1188000.v1.1 MD02G1188100.v1.1 MD05G1219400.v1.1 MD10G1201500.v1.1 MD10G1201600.v1.1 MD10G1201700.v1.1 MD10G1201800.v1.1 MD15G1298900.v1.1
prunus_persica	Prupe.4G140500_v2.0.a1 Prupe.6G219000_v2.0.a1 Prupe.6G219100_v2.0.a1
pyrus_communis	pycom02g15280 pycom05g20080 pycom09g14400 pycom10g17250 pycom10g17260
rosa_chinensis	RchiOBHm_Chr2g0108371 RchiOBHm_Chr5g0026661
rosa_laevigata	RLG00000017664 RLG00000017665 RLG00000017961 RLG00000032944
rosa_multiflora	Rmu_co8428357.1_g000001 Rmu_sc0002372.1_g000017 Rmu_sc0002372.1_g000021 Rmu_sc0004490.1_g000008 Rmu_sc0009208.1_g000005
rosa_roxburghii	Rroxscaffold_1G00052800 Rroxscaffold_2G00135190 Rroxscaffold_2G00135200
rosa_rugosa	Rorug02G0152300 Rorug05G0094600
rosa_samantha	Rh2AG201400 Rh2AG201500 Rh2BG214200 Rh2BG214400 Rh2CG205700 Rh2DG208700 Rh2DG208800 Rh5AG188200 Rh5BG184500 Rh5CG204400 Rh5DG186800
rosa_wichuraiana	Rw2G016030 Rw2G016090 Rw5G017030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	40
AclWI	GGATC	3 cut(s)	32, 51, 152
AcsI	RAATTY	1 cut(s)	298
AfiI	CCNNNNNNNGG	2 cut(s)	23, 355
AgeI	ACCGGT	1 cut(s)	158
AgsI	TTSAA	2 cut(s)	124, 223
AluBI	AGCT	2 cut(s)	51, 332
AluI	AGCT	2 cut(s)	51, 332
Alw26I	GTCTC	1 cut(s)	189
AlwI	GGATC	3 cut(s)	32, 51, 152
Ama87I	CYCGRG	1 cut(s)	17
Aor13HI	TCCGGA	1 cut(s)	40
ApeKI	GCWGC	1 cut(s)	332
ApoI	RAATTY	1 cut(s)	298
ArsI	GACNNNNNNTTYG	2 cut(s)	216, 248
AsiGI	ACCGGT	1 cut(s)	158
AsuC2I	CCSGG	2 cut(s)	24, 129
AsuHPI	GGTGA	1 cut(s)	338
AvaI	CYCGRG	1 cut(s)	17
BanII	GRGCYC	1 cut(s)	24
BbvI	GCAGC	1 cut(s)	319
BceAI	ACGGC	2 cut(s)	107, 160
BcnI	CCSGG	2 cut(s)	24, 129
BcoDI	GTCTC	1 cut(s)	189
BfaI	CTAG	1 cut(s)	243
BfmI	CTRYAG	1 cut(s)	268
BisI	GCNGC	1 cut(s)	333
BlsI	GCNGC	1 cut(s)	334
Bme1390I	CCNGG	2 cut(s)	24, 129
BmeT110I	CYCGRG	1 cut(s)	17
BmrFI	CCNGG	2 cut(s)	24, 129
BmrI	ACTGGG	1 cut(s)	88
BmsI	GCATC	1 cut(s)	327
BmuI	ACTGGG	1 cut(s)	88
BpuMI	CCSGG	2 cut(s)	24, 129
BsaBI	GATNNNNATC	1 cut(s)	42
BsaI	GGTCTC	1 cut(s)	189
BsaJI	CCNNGG	1 cut(s)	250
BsaWI	WCCGGW	4 cut(s)	40, 141, 158, 319
Bsc4I	CCNNNNNNNGG	2 cut(s)	23, 355
Bse118I	RCCGGY	1 cut(s)	158
Bse1I	ACTGG	1 cut(s)	83
Bse8I	GATNNNNATC	1 cut(s)	42
BseAI	TCCGGA	1 cut(s)	40
BseDI	CCNNGG	1 cut(s)	250
BseGI	GGATG	1 cut(s)	286
BseJI	GATNNNNATC	1 cut(s)	42
BseLI	CCNNNNNNNGG	2 cut(s)	23, 355
BseNI	ACTGG	1 cut(s)	83
BseRI	GAGGAG	1 cut(s)	200
BseXI	GCAGC	1 cut(s)	319
Bsh1285I	CGRYCG	1 cut(s)	60
BshTI	ACCGGT	1 cut(s)	158
BsiEI	CGRYCG	1 cut(s)	60
BsiHKCI	CYCGRG	1 cut(s)	17
BsiSI	CCGG	6 cut(s)	24, 41, 129, 142, 159, 320
BslFI	GGGAC	1 cut(s)	95
BslI	CCNNNNNNNGG	2 cut(s)	23, 355
BsmAI	GTCTC	1 cut(s)	189
BsmFI	GGGAC	1 cut(s)	95
Bso31I	GGTCTC	1 cut(s)	189
BsoBI	CYCGRG	1 cut(s)	17
Bsp1286I	GDGCHC	1 cut(s)	24
Bsp13I	TCCGGA	1 cut(s)	40
Bsp143I	GATC	4 cut(s)	37, 43, 57, 144
Bsp19I	CCATGG	1 cut(s)	250
BspEI	TCCGGA	1 cut(s)	40
BspPI	GGATC	3 cut(s)	32, 51, 152
BspTNI	GGTCTC	1 cut(s)	189
BsrFI	RCCGGY	1 cut(s)	158
BsrI	ACTGG	1 cut(s)	83
BssAI	RCCGGY	1 cut(s)	158
BssECI	CCNNGG	1 cut(s)	250
BssMI	GATC	4 cut(s)	37, 43, 57, 144
BssT1I	CCWWGG	1 cut(s)	250
Bst6I	CTCTTC	1 cut(s)	285
BstC8I	GCNNGC	1 cut(s)	342
BstDEI	CTNAG	1 cut(s)	47
BstDSI	CCRYGG	1 cut(s)	250
BstEII	GGTNACC	1 cut(s)	154
BstF5I	GGATG	1 cut(s)	286
BstKTI	GATC	4 cut(s)	40, 46, 60, 147
BstMAI	GTCTC	1 cut(s)	189
BstMBI	GATC	4 cut(s)	37, 43, 57, 144
BstMCI	CGRYCG	1 cut(s)	60
BstMWI	GCNNNNNNNGC	1 cut(s)	341
BstPI	GGTNACC	1 cut(s)	154
BstSCI	CCNGG	2 cut(s)	22, 127
BstSFI	CTRYAG	1 cut(s)	268
BstV1I	GCAGC	1 cut(s)	319
BstX2I	RGATCY	2 cut(s)	43, 144
BstYI	RGATCY	2 cut(s)	43, 144
BtgI	CCRYGG	1 cut(s)	250
BtgZI	GCGATG	1 cut(s)	350
BtsCI	GGATG	1 cut(s)	286
Cac8I	GCNNGC	1 cut(s)	342
Cfr10I	RCCGGY	1 cut(s)	158
CspAI	ACCGGT	1 cut(s)	158
CviAII	CATG	1 cut(s)	251
CviJI	RGCY	3 cut(s)	22, 51, 332
CviKI_1	RGCY	3 cut(s)	22, 51, 332
DdeI	CTNAG	1 cut(s)	47
DpnI	GATC	4 cut(s)	39, 45, 59, 146
DpnII	GATC	4 cut(s)	37, 43, 57, 144
DraI	TTTAAA	1 cut(s)	106
Eam1104I	CTCTTC	1 cut(s)	285
EarI	CTCTTC	1 cut(s)	285
Eco130I	CCWWGG	1 cut(s)	250
Eco24I	GRGCYC	1 cut(s)	24
Eco31I	GGTCTC	1 cut(s)	189
Eco88I	CYCGRG	1 cut(s)	17
Eco91I	GGTNACC	1 cut(s)	154
EcoO65I	GGTNACC	1 cut(s)	154
EcoRI	GAATTC	1 cut(s)	298
EcoT14I	CCWWGG	1 cut(s)	250
EcoT38I	GRGCYC	1 cut(s)	24
ErhI	CCWWGG	1 cut(s)	250
FaeI	CATG	1 cut(s)	254
FaiI	YATR	2 cut(s)	252, 356
FaqI	GGGAC	1 cut(s)	95
FatI	CATG	1 cut(s)	250
Fnu4HI	GCNGC	1 cut(s)	333
FokI	GGATG	1 cut(s)	273
FriOI	GRGCYC	1 cut(s)	24
Fsp4HI	GCNGC	1 cut(s)	333
FspBI	CTAG	1 cut(s)	243
GluI	GCNGC	1 cut(s)	333
HapII	CCGG	6 cut(s)	24, 41, 129, 142, 159, 320
Hin1II	CATG	1 cut(s)	254
HinfI	GANTC	1 cut(s)	246
HpaII	CCGG	6 cut(s)	24, 41, 129, 142, 159, 320
HphI	GGTGA	1 cut(s)	338
Hpy166II	GTNNAC	1 cut(s)	164
Hpy188I	TCNGA	4 cut(s)	136, 194, 215, 291
Hpy188III	TCNNGA	4 cut(s)	17, 41, 61, 257
Hpy8I	GTNNAC	1 cut(s)	164
Hpy99I	CGWCG	1 cut(s)	38
HpyAV	CCTTC	1 cut(s)	126
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	1 cut(s)	341
HpyF3I	CTNAG	1 cut(s)	47
Hsp92II	CATG	1 cut(s)	254
Kpn2I	TCCGGA	1 cut(s)	40
Kzo9I	GATC	4 cut(s)	37, 43, 57, 144
LpnPI	CCDG	7 cut(s)	37, 54, 64, 142, 155, 172, 333
Lsp1109I	GCAGC	1 cut(s)	319
LweI	GCATC	1 cut(s)	327
MaeI	CTAG	1 cut(s)	243
MaeIII	GTNAC	3 cut(s)	154, 204, 254
MalI	GATC	4 cut(s)	39, 45, 59, 146
MboI	GATC	4 cut(s)	37, 43, 57, 144
MboII	GAAGA	4 cut(s)	256, 272, 275, 304
MflI	RGATCY	2 cut(s)	43, 144
MhlI	GDGCHC	1 cut(s)	24
MluCI	AATT	3 cut(s)	5, 274, 298
MnlI	CCTC	3 cut(s)	24, 181, 221
MroI	TCCGGA	1 cut(s)	40
MseI	TTAA	3 cut(s)	105, 149, 327
MspI	CCGG	6 cut(s)	24, 41, 129, 142, 159, 320
MspR9I	CCNGG	2 cut(s)	24, 129
MwoI	GCNNNNNNNGC	1 cut(s)	341
NciI	CCSGG	2 cut(s)	24, 129
NcoI	CCATGG	1 cut(s)	250
NdeII	GATC	4 cut(s)	37, 43, 57, 144
NlaIII	CATG	1 cut(s)	254
NmuCI	GTSAC	1 cut(s)	254
PcsI	WCGNNNNNNNCGW	1 cut(s)	308
PfeI	GAWTC	1 cut(s)	246
PinAI	ACCGGT	1 cut(s)	158
PkrI	GCNGC	1 cut(s)	334
Ple19I	CGATCG	1 cut(s)	60
PspEI	GGTNACC	1 cut(s)	154
PsuI	RGATCY	2 cut(s)	43, 144
PvuI	CGATCG	1 cut(s)	60
SaqAI	TTAA	3 cut(s)	105, 149, 327
SatI	GCNGC	1 cut(s)	333
Sau3AI	GATC	4 cut(s)	37, 43, 57, 144
ScrFI	CCNGG	2 cut(s)	24, 129
SduI	GDGCHC	1 cut(s)	24
SetI	ASST	2 cut(s)	53, 334
SfaNI	GCATC	1 cut(s)	327
SfcI	CTRYAG	1 cut(s)	268
Sse9I	AATT	3 cut(s)	5, 274, 298
SspMI	CTAG	1 cut(s)	243
StyD4I	CCNGG	2 cut(s)	22, 127
StyI	CCWWGG	1 cut(s)	250
TaqI	TCGA	3 cut(s)	56, 60, 234
TasI	AATT	3 cut(s)	5, 274, 298
TfiI	GAWTC	1 cut(s)	246
Tru1I	TTAA	3 cut(s)	105, 149, 327
Tru9I	TTAA	3 cut(s)	105, 149, 327
TseFI	GTSAC	1 cut(s)	254
TseI	GCWGC	1 cut(s)	332
Tsp45I	GTSAC	1 cut(s)	254
TspDTI	ATGAA	3 cut(s)	108, 275, 311
XapI	RAATTY	1 cut(s)	298
XspI	CTAG	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.