MD02G1188000.v1.1

Galactomannan galactosyltransferase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Forward (+)
17170007 .. 17171276
1270 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1188000.v1.1.491

Sequence Viewer

Length: 1230 bp
ATGGCAAAACCCACCCACCAATCCCGACCCTGCACCGACGGGTTTTCCTTCCTCGCTGGCCTATTCATCGCCCTTTTCTCCGTCTGGTTCTTCTGGTGCTTCATCGCCCTGTACCATCACAAACCCAATTTCGGATTCCTCCTTTTTCCTATACCCGGCTCGGGATACGCCGCCCACGACCCAAATCCAGAACCCGACCCGATTGACACTACCTTTTACGACGACCCGGAACTGAGCTACTTCATAGAAAGCCCGATCAGGAACTGGGACCAAAAGCGGCGCGTTTGGCTGGACCTACTTCCGTCGCTCGCTTCCGGGTCGCGAAACCAGGTCCTCCTCGTCACCGGATCGCAGCCGTCCAAGTGTAAGAACCCGATTGGCGATCATTTTCTTCTGAGGCTGTTCAAGAACAAGGTGGACTACTGTCGTTTACATGGACACGAGATTTTCTACAACAACGCGCACTTGCATCCCAACATGGACTCCTATTGGGCCAAGCTTCCGGTTATTCGCGCCGCGATGCTGGCCCACCCAGAAGCCGAATGGATCTGGTGGATGGATTTAGATGCGGTTTTTACGGACATGGAATTTAGGGTTCCGTTGGGCCGGTATGAAAATCACAACCTTGTAGTCCACGGTTGGCCCAATATGGTTTATGGGGACAAAGATAATAAAAGTTGGACCGGGCTCAATGCCGGGGTGTTGTTAATTCGAAATTGTCAGTGGTCCATGGACTTAATTGATGAATGGGCCTCGATTGGCCCACAGACCCCGGATTTTGAAAACTGGGGCCGAATATTGACATCGGTATTCAAGGACAAGCCGTTCCCACTCCCAGACGATCAATCCGCTCTGATTTACTTGCTCTTCACGGATGAGGAGAGGTGGGGGAAAAAAGACTTATTTGGAGTGGGATACGATAACTTCACCGAGAGTTACGCCGAGACGGAGCGAAACGACAACGGTTTAAGGAGGAAACATGCGGAGAAAGTGAATGAGTGGTACGGTGCGAAAAAAGAGACGTATCTTAAGGGGCGCGTGAGGAGACCGTTTGTGACGCATTTTACCGGGTGTCAACCGTGCAGCGGAGAGCACAATCCACAGTATACCGGGGATTCGTGTTGGGACGAGATGAATAGGGCTTTGAATTTCGCGGATAATCAAGTACTTCAAAATTATGGTTTTGTGCACCTTGATTTGAGTTCGTCAACTGTTTCTGTTATGTTGTAA

Protein Analysis

410

Amino Acids

47.42

Weight (kDa)

5.8

Isoelectric Point (pI)

34.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_34 PF05637 109 - 363 1.6e-56 galactosyl transferase GMA12/MNN10 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 851
AccI GTMKAC 1 cut(s) 1106
AccII CGCG 7 cut(s) 282, 322, 461, 513, 518, 1038, 1154
AciI CCGC 8 cut(s) 171, 277, 516, 569, 849, 983, 1086, 1154
AclWI GGATC 2 cut(s) 355, 554
AcsI RAATTY 2 cut(s) 587, 1147
AfaI GTAC 3 cut(s) 113, 1004, 1167
AfiI CCNNNNNNNGG 4 cut(s) 131, 155, 161, 1085
AflII CTTAAG 1 cut(s) 1028
AgsI TTSAA 5 cut(s) 406, 782, 814, 1147, 1172
AjnI CCWGG 1 cut(s) 327
AjuI GAANNNNNNNTTGG 2 cut(s) 119, 151
AloI GAACNNNNNNTCC 2 cut(s) 809, 841
AluBI AGCT 2 cut(s) 237, 499
AluI AGCT 2 cut(s) 237, 499
Alw21I GWGCWC 2 cut(s) 1095, 1191
Alw26I GTCTC 3 cut(s) 938, 1013, 1039
Alw44I GTGCAC 1 cut(s) 1187
AlwI GGATC 2 cut(s) 355, 554
AlwNI CAGNNNCTG 1 cut(s) 264
Ama87I CYCGRG 1 cut(s) 160
AoxI GGCC 8 cut(s) 58, 492, 525, 604, 641, 750, 760, 790
ApaLI GTGCAC 1 cut(s) 1187
ApeKI GCWGC 2 cut(s) 352, 1083
ApoI RAATTY 2 cut(s) 587, 1147
AspLEI GCGC 4 cut(s) 282, 463, 515, 1038
AsuC2I CCSGG 8 cut(s) 156, 227, 316, 685, 697, 773, 1069, 1111
AsuHPI GGTGA 2 cut(s) 334, 919
AsuII TTCGAA 1 cut(s) 712
AvaI CYCGRG 1 cut(s) 160
AvaII GGWCC 5 cut(s) 268, 292, 331, 681, 726
BaeGI GKGCMC 1 cut(s) 1191
BanII GRGCYC 1 cut(s) 690
BauI CACGAG 1 cut(s) 440
Bbv12I GWGCWC 2 cut(s) 1095, 1191
BbvI GCAGC 2 cut(s) 364, 1095
BccI CCATC 2 cut(s) 123, 550
BceAI ACGGC 2 cut(s) 340, 808
BciT130I CCWGG 1 cut(s) 329
BciVI GTATCC 2 cut(s) 158, 908
BcnI CCSGG 8 cut(s) 156, 227, 316, 685, 697, 773, 1069, 1111
BcoDI GTCTC 3 cut(s) 938, 1013, 1039
BfrI CTTAAG 1 cut(s) 1028
BfuI GTATCC 2 cut(s) 158, 908
BisI GCNGC 5 cut(s) 171, 278, 353, 516, 1084
BlsI GCNGC 5 cut(s) 172, 279, 354, 517, 1085
BmcAI AGTACT 1 cut(s) 1167
Bme1390I CCNGG 9 cut(s) 156, 227, 316, 329, 685, 697, 773, 1069, 1111
Bme18I GGWCC 5 cut(s) 268, 292, 331, 681, 726
BmeT110I CYCGRG 1 cut(s) 160
BmiI GGNNCC 3 cut(s) 269, 597, 791
BmrFI CCNGG 9 cut(s) 156, 227, 316, 329, 685, 697, 773, 1069, 1111
BmrI ACTGGG 2 cut(s) 274, 796
BmsI GCATC 3 cut(s) 478, 510, 556
BmuI ACTGGG 2 cut(s) 274, 796
BoxI GACNNNNGTC 1 cut(s) 423
Bpu14I TTCGAA 1 cut(s) 712
BpuMI CCSGG 8 cut(s) 156, 227, 316, 685, 697, 773, 1069, 1111
BsaI GGTCTC 1 cut(s) 1039
BsaJI CCNNGG 5 cut(s) 634, 696, 729, 771, 1110
BsaWI WCCGGW 2 cut(s) 344, 502
BsaXI ACNNNNNCTCC 2 cut(s) 467, 497
Bsc4I CCNNNNNNNGG 4 cut(s) 131, 155, 161, 1085
Bse118I RCCGGY 1 cut(s) 606
Bse1I ACTGG 2 cut(s) 269, 791
BseBI CCWGG 1 cut(s) 329
BseDI CCNNGG 5 cut(s) 634, 696, 729, 771, 1110
BseGI GGATG 3 cut(s) 469, 561, 880
BseLI CCNNNNNNNGG 4 cut(s) 131, 155, 161, 1085
BseMII CTCAG 2 cut(s) 224, 386
BseNI ACTGG 2 cut(s) 269, 791
BseRI GAGGAG 3 cut(s) 326, 893, 1057
BseSI GKGCMC 1 cut(s) 1191
BseXI GCAGC 2 cut(s) 364, 1095
BsgI GTGCAG 2 cut(s) 16, 1102
Bsh1236I CGCG 7 cut(s) 282, 322, 461, 513, 518, 1038, 1154
BshFI GGCC 8 cut(s) 60, 494, 527, 606, 643, 752, 762, 792
BsiHKAI GWGCWC 2 cut(s) 1095, 1191
BsiHKCI CYCGRG 1 cut(s) 160
BslFI GGGAC 3 cut(s) 281, 674, 1139
BslI CCNNNNNNNGG 4 cut(s) 131, 155, 161, 1085
BsmAI GTCTC 3 cut(s) 938, 1013, 1039
BsmBI CGTCTC 2 cut(s) 938, 1013
BsmFI GGGAC 3 cut(s) 281, 674, 1139
BsnI GGCC 8 cut(s) 60, 494, 527, 606, 643, 752, 762, 792
Bso31I GGTCTC 1 cut(s) 1039
BsoBI CYCGRG 1 cut(s) 160
Bsp119I TTCGAA 1 cut(s) 712
Bsp1286I GDGCHC 3 cut(s) 690, 1095, 1191
Bsp143I GATC 5 cut(s) 255, 347, 382, 546, 841
Bsp19I CCATGG 1 cut(s) 729
Bsp68I TCGCGA 1 cut(s) 322
BspACI CCGC 8 cut(s) 171, 277, 516, 569, 849, 983, 1086, 1154
BspANI GGCC 8 cut(s) 60, 494, 527, 606, 643, 752, 762, 792
BspCNI CTCAG 2 cut(s) 225, 387
BspFNI CGCG 7 cut(s) 282, 322, 461, 513, 518, 1038, 1154
BspLI GGNNCC 3 cut(s) 269, 597, 791
BspPI GGATC 2 cut(s) 355, 554
BspQI GCTCTTC 1 cut(s) 872
BspT104I TTCGAA 1 cut(s) 712
BspTI CTTAAG 1 cut(s) 1028
BspTNI GGTCTC 1 cut(s) 1039
BsrBI CCGCTC 1 cut(s) 851
BsrFI RCCGGY 1 cut(s) 606
BsrI ACTGG 2 cut(s) 269, 791
BssAI RCCGGY 1 cut(s) 606
BssECI CCNNGG 5 cut(s) 634, 696, 729, 771, 1110
BssMI GATC 5 cut(s) 255, 347, 382, 546, 841
BssNAI GTATAC 1 cut(s) 1107
BssSI CACGAG 1 cut(s) 440
BssT1I CCWWGG 1 cut(s) 729
Bst1107I GTATAC 1 cut(s) 1107
Bst2BI CACGAG 1 cut(s) 440
Bst2UI CCWGG 1 cut(s) 329
Bst4CI ACNGT 8 cut(s) 425, 638, 965, 1007, 1050, 1080, 1104, 1213
Bst6I CTCTTC 1 cut(s) 872
BstAFI CTTAAG 1 cut(s) 1028
BstBI TTCGAA 1 cut(s) 712
BstC8I GCNNGC 3 cut(s) 58, 309, 525
BstDEI CTNAG 2 cut(s) 233, 395
BstDSI CCRYGG 2 cut(s) 634, 729
BstF5I GGATG 3 cut(s) 469, 561, 880
BstFNI CGCG 7 cut(s) 282, 322, 461, 513, 518, 1038, 1154
BstHHI GCGC 4 cut(s) 282, 463, 515, 1038
BstKTI GATC 5 cut(s) 258, 350, 385, 549, 844
BstMAI GTCTC 3 cut(s) 938, 1013, 1039
BstMBI GATC 5 cut(s) 255, 347, 382, 546, 841
BstMWI GCNNNNNNNGC 2 cut(s) 286, 524
BstNI CCWGG 1 cut(s) 329
BstNSI RCATGY 1 cut(s) 983
BstPAI GACNNNNGTC 1 cut(s) 423
BstSCI CCNGG 9 cut(s) 154, 225, 314, 327, 683, 695, 771, 1067, 1109
BstSLI GKGCMC 1 cut(s) 1191
BstUI CGCG 7 cut(s) 282, 322, 461, 513, 518, 1038, 1154
BstV1I GCAGC 2 cut(s) 364, 1095
BstX2I RGATCY 1 cut(s) 546
BstYI RGATCY 1 cut(s) 546
BstZ17I GTATAC 1 cut(s) 1107
BsuI GTATCC 2 cut(s) 158, 908
BsuRI GGCC 8 cut(s) 60, 494, 527, 606, 643, 752, 762, 792
BtgI CCRYGG 2 cut(s) 634, 729
BtgZI GCGATG 3 cut(s) 52, 88, 533
BtsCI GGATG 3 cut(s) 469, 561, 880
BtsIMutI CAGTG 1 cut(s) 728
BtuMI TCGCGA 1 cut(s) 322
Cac8I GCNNGC 3 cut(s) 58, 309, 525
CaiI CAGNNNCTG 1 cut(s) 264
CfoI GCGC 4 cut(s) 282, 463, 515, 1038
Cfr10I RCCGGY 1 cut(s) 606
CseI GACGC 1 cut(s) 1066
CsiI ACCWGGT 1 cut(s) 327
Csp6I GTAC 3 cut(s) 112, 1003, 1166
CviAII CATG 5 cut(s) 434, 478, 583, 730, 980
CviQI GTAC 3 cut(s) 112, 1003, 1166
DdeI CTNAG 2 cut(s) 233, 395
DpnI GATC 5 cut(s) 257, 349, 384, 548, 843
DpnII GATC 5 cut(s) 255, 347, 382, 546, 841
Eam1104I CTCTTC 1 cut(s) 872
EarI CTCTTC 1 cut(s) 872
Eco130I CCWWGG 1 cut(s) 729
Eco24I GRGCYC 1 cut(s) 690
Eco31I GGTCTC 1 cut(s) 1039
Eco47I GGWCC 5 cut(s) 268, 292, 331, 681, 726
Eco88I CYCGRG 1 cut(s) 160
EcoO109I RGGNCCY 1 cut(s) 331
EcoRII CCWGG 1 cut(s) 327
EcoT14I CCWWGG 1 cut(s) 729
EcoT38I GRGCYC 1 cut(s) 690
ErhI CCWWGG 1 cut(s) 729
Esp3I CGTCTC 2 cut(s) 938, 1013
FaeI CATG 5 cut(s) 437, 481, 586, 733, 983
FaqI GGGAC 3 cut(s) 281, 674, 1139
FatI CATG 5 cut(s) 433, 477, 582, 729, 979
FblI GTMKAC 1 cut(s) 1106
Fnu4HI GCNGC 5 cut(s) 171, 278, 353, 516, 1084
FokI GGATG 3 cut(s) 456, 568, 887
FriOI GRGCYC 1 cut(s) 690
Fsp4HI GCNGC 5 cut(s) 171, 278, 353, 516, 1084
GlaI GCGC 4 cut(s) 281, 462, 514, 1037
GluI GCNGC 5 cut(s) 171, 278, 353, 516, 1084
HaeIII GGCC 8 cut(s) 60, 494, 527, 606, 643, 752, 762, 792
HgaI GACGC 1 cut(s) 1066
HhaI GCGC 4 cut(s) 282, 463, 515, 1038
Hin1II CATG 5 cut(s) 437, 481, 586, 733, 983
Hin6I GCGC 4 cut(s) 280, 461, 513, 1036
HinP1I GCGC 4 cut(s) 280, 461, 513, 1036
HincII GTYRAC 2 cut(s) 1076, 1209
HindII GTYRAC 2 cut(s) 1076, 1209
HindIII AAGCTT 1 cut(s) 497
HinfI GANTC 3 cut(s) 135, 482, 1115
HphI GGTGA 2 cut(s) 334, 919
Hpy166II GTNNAC 7 cut(s) 418, 431, 634, 1076, 1107, 1189, 1209
Hpy188I TCNGA 3 cut(s) 134, 396, 855
Hpy188III TCNNGA 6 cut(s) 24, 162, 188, 259, 321, 406
Hpy8I GTNNAC 7 cut(s) 418, 431, 634, 1076, 1107, 1189, 1209
Hpy99I CGWCG 3 cut(s) 41, 224, 307
HpyAV CCTTC 1 cut(s) 58
HpyCH4III ACNGT 8 cut(s) 425, 638, 965, 1007, 1050, 1080, 1104, 1213
HpyCH4IV ACGT 1 cut(s) 1022
HpyCH4V TGCA 4 cut(s) 33, 469, 1083, 1189
HpyF10VI GCNNNNNNNGC 2 cut(s) 286, 524
HpyF3I CTNAG 2 cut(s) 233, 395
HpySE526I ACGT 1 cut(s) 1022
Hsp92II CATG 5 cut(s) 437, 481, 586, 733, 983
HspAI GCGC 4 cut(s) 280, 461, 513, 1036
Kzo9I GATC 5 cut(s) 255, 347, 382, 546, 841
LguI GCTCTTC 1 cut(s) 872
LmnI GCTCC 1 cut(s) 949
Lsp1109I GCAGC 2 cut(s) 364, 1095
LweI GCATC 3 cut(s) 478, 510, 556
MabI ACCWGGT 1 cut(s) 327
MaeII ACGT 1 cut(s) 1022
MaeIII GTNAC 3 cut(s) 340, 935, 1054
MalI GATC 5 cut(s) 257, 349, 384, 548, 843
MbiI CCGCTC 1 cut(s) 851
MboI GATC 5 cut(s) 255, 347, 382, 546, 841
MboII GAAGA 3 cut(s) 82, 383, 859
MflI RGATCY 1 cut(s) 546
MhlI GDGCHC 3 cut(s) 690, 1095, 1191
MluCI AATT 7 cut(s) 127, 587, 708, 715, 738, 1147, 1174
MlyI GAGTC 1 cut(s) 476
MmeI TCCRAC 1 cut(s) 659
MseI TTAA 4 cut(s) 707, 737, 968, 1029
MspA1I CMGCKG 1 cut(s) 1086
MspCI CTTAAG 1 cut(s) 1028
MspR9I CCNGG 9 cut(s) 156, 227, 316, 329, 685, 697, 773, 1069, 1111
MvaI CCWGG 1 cut(s) 329
MvnI CGCG 7 cut(s) 282, 322, 461, 513, 518, 1038, 1154
MwoI GCNNNNNNNGC 2 cut(s) 286, 524
NciI CCSGG 8 cut(s) 156, 227, 316, 685, 697, 773, 1069, 1111
NcoI CCATGG 1 cut(s) 729
NdeII GATC 5 cut(s) 255, 347, 382, 546, 841
NlaIII CATG 5 cut(s) 437, 481, 586, 733, 983
NlaIV GGNNCC 3 cut(s) 269, 597, 791
NmeAIII GCCGAG 1 cut(s) 967
NmuCI GTSAC 2 cut(s) 340, 1054
NruI TCGCGA 1 cut(s) 322
NspI RCATGY 1 cut(s) 983
NspV TTCGAA 1 cut(s) 712
PciSI GCTCTTC 1 cut(s) 872
PcsI WCGNNNNNNNCGW 1 cut(s) 174
PfeI GAWTC 2 cut(s) 135, 1115
PkrI GCNGC 5 cut(s) 172, 279, 354, 517, 1085
PleI GAGTC 1 cut(s) 476
PpsI GAGTC 1 cut(s) 476
PpuMI RGGWCCY 1 cut(s) 331
PshAI GACNNNNGTC 1 cut(s) 423
Psp5II RGGWCCY 1 cut(s) 331
Psp6I CCWGG 1 cut(s) 327
PspGI CCWGG 1 cut(s) 327
PspN4I GGNNCC 3 cut(s) 269, 597, 791
PspPPI RGGWCCY 1 cut(s) 331
PstNI CAGNNNCTG 1 cut(s) 264
PsuI RGATCY 1 cut(s) 546
RruI TCGCGA 1 cut(s) 322
RsaI GTAC 3 cut(s) 113, 1004, 1167
RsaNI GTAC 3 cut(s) 112, 1003, 1166
SapI GCTCTTC 1 cut(s) 872
SaqAI TTAA 4 cut(s) 707, 737, 968, 1029
SatI GCNGC 5 cut(s) 171, 278, 353, 516, 1084
Sau3AI GATC 5 cut(s) 255, 347, 382, 546, 841
ScaI AGTACT 1 cut(s) 1167
SchI GAGTC 1 cut(s) 476
ScrFI CCNGG 9 cut(s) 156, 227, 316, 329, 685, 697, 773, 1069, 1111
SduI GDGCHC 3 cut(s) 690, 1095, 1191
SexAI ACCWGGT 1 cut(s) 327
SfaNI GCATC 3 cut(s) 478, 510, 556
SfuI TTCGAA 1 cut(s) 712
SinI GGWCC 5 cut(s) 268, 292, 331, 681, 726
SmlI CTYRAG 1 cut(s) 1028
SmoI CTYRAG 1 cut(s) 1028
Sse9I AATT 7 cut(s) 127, 587, 708, 715, 738, 1147, 1174
SsiI CCGC 8 cut(s) 171, 277, 516, 569, 849, 983, 1086, 1154
SspI AATATT 1 cut(s) 798
StyD4I CCNGG 9 cut(s) 154, 225, 314, 327, 683, 695, 771, 1067, 1109
StyI CCWWGG 1 cut(s) 729
TaaI ACNGT 8 cut(s) 425, 638, 965, 1007, 1050, 1080, 1104, 1213
TaiI ACGT 1 cut(s) 1025
TaqI TCGA 2 cut(s) 712, 755
TasI AATT 7 cut(s) 127, 587, 708, 715, 738, 1147, 1174
TatI WGTACW 1 cut(s) 1165
TauI GCSGC 3 cut(s) 173, 280, 518
TfiI GAWTC 2 cut(s) 135, 1115
Tru1I TTAA 4 cut(s) 707, 737, 968, 1029
Tru9I TTAA 4 cut(s) 707, 737, 968, 1029
TscAI CASTG 1 cut(s) 728
TseFI GTSAC 2 cut(s) 340, 1054
TseI GCWGC 2 cut(s) 352, 1083
Tsp45I GTSAC 2 cut(s) 340, 1054
TspDTI ATGAA 6 cut(s) 55, 91, 232, 627, 759, 1148
TspGWI ACGGA 6 cut(s) 70, 291, 588, 593, 887, 962
TspRI CASTG 1 cut(s) 728
Vha464I CTTAAG 1 cut(s) 1028
VneI GTGCAC 1 cut(s) 1187
VpaK11BI GGWCC 5 cut(s) 268, 292, 331, 681, 726
XapI RAATTY 2 cut(s) 587, 1147
XceI RCATGY 1 cut(s) 983
XcmI CCANNNNNNNNNTGG 1 cut(s) 540
XmiI GTMKAC 1 cut(s) 1106
ZrmI AGTACT 1 cut(s) 1167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.