Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001277

Physical Location & Seq

Genomic Coordinates Forward (+)

19769178 .. 19769342

Gene Structure 165 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ48229

Sequence Viewer

CDS Protein Promoter (2k)

Length: 165 bp

ATGGACTCGGATGCGGTGTTTACGGATTTGGAGTTTGAGATTCCGTTGGACCGGCACAAGAACCACAACCTTGTGACTCATTTTACTGGGTGTCAACCATGTAATGGAGAGCATAATCCAAAATATAAAGGAGATGCTTGTTGGAATAATGAGATGAAGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0006080 GO:0008150 GO:0008152 GO:0008378 GO:0009058 GO:0009059 GO:0009987 GO:0010191 GO:0010192 GO:0010392 GO:0012505 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0031410 GO:0031982 GO:0031984 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051069 GO:0051070 GO:0071704 GO:0097708 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_34

Protein Analysis

54

Amino Acids

6.25

Weight (kDa)

5.32

Isoelectric Point (pI)

34.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001277)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22900 AT4G37690 AT4G38310
fragaria_vesca	FvH4_1g17940 FvH4_1g17941 FvH4_1g17941 FvH4_1g17941 FvH4_3g15850 FvH4_3g15870
malus_domestica	MD02G1188000.v1.1 MD02G1188100.v1.1 MD05G1219400.v1.1 MD10G1201500.v1.1 MD10G1201600.v1.1 MD10G1201700.v1.1 MD10G1201800.v1.1 MD15G1298900.v1.1
prunus_persica	Prupe.4G140500_v2.0.a1 Prupe.6G219000_v2.0.a1 Prupe.6G219100_v2.0.a1
pyrus_communis	pycom02g15280 pycom05g20080 pycom09g14400 pycom10g17250 pycom10g17260
rosa_chinensis	RchiOBHm_Chr2g0108371 RchiOBHm_Chr5g0026661
rosa_laevigata	RLG00000017664 RLG00000017665 RLG00000017961 RLG00000032944
rosa_multiflora	Rmu_co8428357.1_g000001 Rmu_sc0002372.1_g000017 Rmu_sc0002372.1_g000021 Rmu_sc0004490.1_g000008 Rmu_sc0009208.1_g000005
rosa_roxburghii	Rroxscaffold_1G00052800 Rroxscaffold_2G00135190 Rroxscaffold_2G00135200
rosa_rugosa	Rorug02G0152300 Rorug05G0094600
rosa_samantha	Rh2AG201400 Rh2AG201500 Rh2BG214200 Rh2BG214400 Rh2CG205700 Rh2DG208700 Rh2DG208800 Rh5AG188200 Rh5BG184500 Rh5CG204400 Rh5DG186800
rosa_wichuraiana	Rw2G016030 Rw2G016090 Rw5G017030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	104
AciI	CCGC	1 cut(s)	14
AfiI	CCNNNNNNNGG	1 cut(s)	104
AspS9I	GGNCC	1 cut(s)	49
AvaII	GGWCC	1 cut(s)	49
Bme18I	GGWCC	1 cut(s)	49
BmgT120I	GGNCC	1 cut(s)	49
BmrI	ACTGGG	1 cut(s)	96
BmsI	GCATC	1 cut(s)	124
BmuI	ACTGGG	1 cut(s)	96
Bsc4I	CCNNNNNNNGG	1 cut(s)	104
Bse118I	RCCGGY	1 cut(s)	51
Bse1I	ACTGG	1 cut(s)	91
BseGI	GGATG	1 cut(s)	16
BseLI	CCNNNNNNNGG	1 cut(s)	104
BseNI	ACTGG	1 cut(s)	91
BsiSI	CCGG	1 cut(s)	52
BslI	CCNNNNNNNGG	1 cut(s)	104
BspACI	CCGC	1 cut(s)	14
BsrFI	RCCGGY	1 cut(s)	51
BsrI	ACTGG	1 cut(s)	91
BssAI	RCCGGY	1 cut(s)	51
BstF5I	GGATG	1 cut(s)	16
BtsCI	GGATG	1 cut(s)	16
Cfr10I	RCCGGY	1 cut(s)	51
Cfr13I	GGNCC	1 cut(s)	49
CviAII	CATG	1 cut(s)	99
Eco47I	GGWCC	1 cut(s)	49
FaeI	CATG	1 cut(s)	102
FaiI	YATR	3 cut(s)	100, 114, 126
FatI	CATG	1 cut(s)	98
FokI	GGATG	1 cut(s)	23
HapII	CCGG	1 cut(s)	52
Hin1II	CATG	1 cut(s)	102
HincII	GTYRAC	1 cut(s)	95
HindII	GTYRAC	1 cut(s)	95
HinfI	GANTC	3 cut(s)	5, 40, 76
HpaII	CCGG	1 cut(s)	52
Hpy166II	GTNNAC	2 cut(s)	21, 95
Hpy188I	TCNGA	1 cut(s)	10
Hpy8I	GTNNAC	2 cut(s)	21, 95
Hsp92II	CATG	1 cut(s)	102
LpnPI	CCDG	2 cut(s)	65, 72
LweI	GCATC	1 cut(s)	124
MaeIII	GTNAC	1 cut(s)	73
MlyI	GAGTC	1 cut(s)	70
MmeI	TCCRAC	2 cut(s)	27, 122
MspI	CCGG	1 cut(s)	52
NlaIII	CATG	1 cut(s)	102
NmuCI	GTSAC	1 cut(s)	73
PfeI	GAWTC	1 cut(s)	40
PflMI	CCANNNNNTGG	1 cut(s)	104
PleI	GAGTC	1 cut(s)	70
PpsI	GAGTC	1 cut(s)	70
PspPI	GGNCC	1 cut(s)	49
Sau96I	GGNCC	1 cut(s)	49
SchI	GAGTC	1 cut(s)	70
SetI	ASST	1 cut(s)	72
SfaNI	GCATC	1 cut(s)	124
SgeI	CNNG	7 cut(s)	19, 64, 70, 83, 99, 111, 150
SinI	GGWCC	1 cut(s)	49
SsiI	CCGC	1 cut(s)	14
TfiI	GAWTC	1 cut(s)	40
TseFI	GTSAC	1 cut(s)	73
Tsp45I	GTSAC	1 cut(s)	73
TspGWI	ACGGA	2 cut(s)	33, 38
Van91I	CCANNNNNTGG	1 cut(s)	104
VpaK11BI	GGWCC	1 cut(s)	49

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.