FvH4_3g15870

glycosyltransferase 7

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0001277
Physical Location & Seq
Forward (+)
9981273 .. 9981473
201 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g15870.t1

Sequence Viewer

Length: 201 bp
ATGCTTAAGACATTCAAGAATGAAGTTGATAATGGCAGACTCCGTGGCTATGACATTTTCTACAGCAATGTTTTGTTGCATCCAGGAGCAACTGGTAGCTGGCCCAAAAACCCCCTTCTCTGTGCTGCTATGTTGGCTCATCTTGAGGCCGAGTGGATCTGGAGGATCGACTCAGATGCAATCTTCACGGACATTGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_transf_34

Protein Analysis

67

Amino Acids

7.49

Weight (kDa)

5.45

Isoelectric Point (pI)

8.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_34 PF05637 2 - 65 6.3e-14 galactosyl transferase GMA12/MNN10 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 164, 173
AflII CTTAAG 1 cut(s) 5
AgsI TTSAA 1 cut(s) 16
AjnI CCWGG 1 cut(s) 82
AluBI AGCT 1 cut(s) 99
AluI AGCT 1 cut(s) 99
Alw26I GTCTC 3 cut(s) 208, 404, 1485
AlwI GGATC 2 cut(s) 164, 173
AoxI GGCC 2 cut(s) 101, 147
ApeKI GCWGC 1 cut(s) 125
AspS9I GGNCC 1 cut(s) 102
BbvI GCAGC 1 cut(s) 112
BcgI CGANNNNNNTGC 2 cut(s) 158, 192
BciT130I CCWGG 1 cut(s) 84
BfmI CTRYAG 1 cut(s) 61
BfrI CTTAAG 1 cut(s) 5
BisI GCNGC 1 cut(s) 126
BlsI GCNGC 1 cut(s) 127
Bme1390I CCNGG 1 cut(s) 84
BmgT120I GGNCC 1 cut(s) 102
BmrFI CCNGG 1 cut(s) 84
BmsI GCATC 2 cut(s) 88, 166
BpmI CTGGAG 1 cut(s) 181
BpuEI CTTGAG 1 cut(s) 164
BsaJI CCNNGG 1 cut(s) 43
Bse1I ACTGG 1 cut(s) 97
Bse3DI GCAATG 1 cut(s) 73
BseBI CCWGG 1 cut(s) 84
BseDI CCNNGG 1 cut(s) 43
BseGI GGATG 1 cut(s) 79
BseMI GCAATG 1 cut(s) 73
BseMII CTCAG 1 cut(s) 186
BseNI ACTGG 1 cut(s) 97
BseXI GCAGC 1 cut(s) 112
BshFI GGCC 2 cut(s) 103, 149
BsnI GGCC 2 cut(s) 103, 149
Bsp143I GATC 2 cut(s) 156, 165
BspANI GGCC 2 cut(s) 103, 149
BspCNI CTCAG 1 cut(s) 185
BspPI GGATC 2 cut(s) 164, 173
BspTI CTTAAG 1 cut(s) 5
BsrDI GCAATG 1 cut(s) 73
BsrI ACTGG 1 cut(s) 97
BssECI CCNNGG 1 cut(s) 43
BssMI GATC 2 cut(s) 156, 165
Bst2UI CCWGG 1 cut(s) 84
BstAFI CTTAAG 1 cut(s) 5
BstC8I GCNNGC 1 cut(s) 101
BstDEI CTNAG 1 cut(s) 172
BstDSI CCRYGG 1 cut(s) 43
BstF5I GGATG 1 cut(s) 79
BstKTI GATC 2 cut(s) 159, 168
BstMBI GATC 2 cut(s) 156, 165
BstMWI GCNNNNNNNGC 1 cut(s) 134
BstNI CCWGG 1 cut(s) 84
BstSCI CCNGG 1 cut(s) 82
BstSFI CTRYAG 1 cut(s) 61
BstV1I GCAGC 1 cut(s) 112
BstX2I RGATCY 1 cut(s) 156
BstYI RGATCY 1 cut(s) 156
BsuRI GGCC 2 cut(s) 103, 149
BtgI CCRYGG 1 cut(s) 43
BtsCI GGATG 1 cut(s) 79
Cac8I GCNNGC 1 cut(s) 101
Cfr13I GGNCC 1 cut(s) 102
CviJI RGCY 5 cut(s) 48, 99, 103, 137, 149
CviKI_1 RGCY 5 cut(s) 48, 99, 103, 137, 149
DdeI CTNAG 1 cut(s) 172
DpnI GATC 2 cut(s) 158, 167
DpnII GATC 2 cut(s) 156, 165
EcoRII CCWGG 1 cut(s) 82
FaiI YATR 2 cut(s) 51, 131
Fnu4HI GCNGC 1 cut(s) 126
FokI GGATG 1 cut(s) 66
Fsp4HI GCNGC 1 cut(s) 126
GluI GCNGC 1 cut(s) 126
GsuI CTGGAG 1 cut(s) 181
HaeIII GGCC 2 cut(s) 103, 149
HinfI GANTC 2 cut(s) 39, 170
Hpy188I TCNGA 1 cut(s) 175
Hpy188III TCNNGA 3 cut(s) 16, 143, 160
HpyAV CCTTC 1 cut(s) 125
HpyCH4V TGCA 2 cut(s) 79, 179
HpyF10VI GCNNNNNNNGC 1 cut(s) 134
HpyF3I CTNAG 1 cut(s) 172
Kzo9I GATC 2 cut(s) 156, 165
LmnI GCTCC 1 cut(s) 86
LpnPI CCDG 5 cut(s) 69, 78, 85, 96, 145
Lsp1109I GCAGC 1 cut(s) 112
LweI GCATC 2 cut(s) 88, 166
MalI GATC 2 cut(s) 158, 167
MboI GATC 2 cut(s) 156, 165
MboII GAAGA 1 cut(s) 175
MflI RGATCY 1 cut(s) 156
MlyI GAGTC 2 cut(s) 33, 164
MnlI CCTC 2 cut(s) 139, 156
MseI TTAA 1 cut(s) 6
MspCI CTTAAG 1 cut(s) 5
MspR9I CCNGG 1 cut(s) 84
MvaI CCWGG 1 cut(s) 84
MwoI GCNNNNNNNGC 1 cut(s) 134
NdeII GATC 2 cut(s) 156, 165
NmeAIII GCCGAG 1 cut(s) 175
PfoI TCCNGGA 1 cut(s) 82
PkrI GCNGC 1 cut(s) 127
PleI GAGTC 2 cut(s) 33, 164
PpsI GAGTC 2 cut(s) 33, 164
Psp6I CCWGG 1 cut(s) 82
PspGI CCWGG 1 cut(s) 82
PspPI GGNCC 1 cut(s) 102
PsuI RGATCY 1 cut(s) 156
SaqAI TTAA 1 cut(s) 6
SatI GCNGC 1 cut(s) 126
Sau3AI GATC 2 cut(s) 156, 165
Sau96I GGNCC 1 cut(s) 102
SchI GAGTC 2 cut(s) 33, 164
ScrFI CCNGG 1 cut(s) 84
SetI ASST 1 cut(s) 101
SfaNI GCATC 2 cut(s) 88, 166
SfcI CTRYAG 1 cut(s) 61
SgeI CNNG 9 cut(s) 28, 56, 95, 96, 105, 112, 155, 163, 172
SmlI CTYRAG 2 cut(s) 5, 143
SmoI CTYRAG 2 cut(s) 5, 143
StyD4I CCNGG 1 cut(s) 82
TaqI TCGA 1 cut(s) 168
Tru1I TTAA 1 cut(s) 6
Tru9I TTAA 1 cut(s) 6
TseI GCWGC 1 cut(s) 125
TspDTI ATGAA 1 cut(s) 36
TspGWI ACGGA 1 cut(s) 32
Vha464I CTTAAG 1 cut(s) 5
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.