Rroxscaffold_1G00052800

glycosyltransferase 7

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0001277
Physical Location & Seq
Reverse (-)
73544162 .. 73545984
1823 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00052800.1

Sequence Viewer

Length: 1311 bp
ATGGGTTCCCAAGAGTTCTCTCTCTTCCAAACATCCCCACACAAACGCTCACTTCTCCACAGAGCCCCTTCTCTAATCGCAGATGGTTTCCTCTTCGTTGGTGGAGCAGCCATGGCTTTATCTCTGGTTTGGGCACTAATCTCCTTCATAAACCCCAGCTCAACCTTCGACACCATCATCACCTACGACAACACCCCTCAAGGCTCTGACTTGGGCTACGACCCGCCAGAGCCGACGTTCTACGACGACCCTAATCTCAGCTACTCAGTTGGGGAAGCCATAGAAAACTGGGATGAGAAGCGCAGAGAGTGGCTGAGGGTTCACCCCTCTTTTGGTGTTGGTGATAGGATTGTTCTTGTTACCGGTTCTCAGCCTTCGGTGTGTAAAAACCCGGTTGGGGATCATTTACAGTTGAGACTGTTCAAGAACAAAGTAGACTACTGCAGGTTTCATGGCTGTGAAGTGTTCTACAACAATGTTCTTCTGGACCCTAAAGGAACCGGTTTCTGGGCCAAGTACCCGATTCTCAGAGCCGCCATGGTGGCCCATCCAGAGGCAGAGTGGATCTACTGGGTCGACTCGGACGCCATTTTCACCGACATGGAGTTCAAGGTGCCATTGGAGAAGTACAAGGACCATAACTTGGTTGTTCATGGGTGGTGGCACATGGTGAAGCAGCAGAGCTGGACTAGCGTCAATGCTGGTGTGTTCTTGATTAGGAACTGCCAGTGGTCCTTGGAGTTCATCGATGAATGGGCCAGCATGGGCCCACAAGGCCCTGCCAAAGAGAAATGGGGGGAGACCCAGAAATCATTGCTCAAGGACAAGCTGTATCCAGGGTCAGATGACCAGTCTGCTCTTATCTACCTTCTGCTGAAGCAGAGGCAGAAATGGGGGGACAAGGTTTACTTGGAGAGTGAGTACAATTTCCAAAGCTACTGGCTTGGGGTGGTGGATGGCCTTGATAACATCACCAAAGGGTACATGGAGGTTGATAGAGAAATGGGGAAACTGAGGAGGAGGCATGCTGAGAAGGTGAGTGAGTTTTATGGGGAAGTGAGAGAGCAGTATATGAAGGATAAGGGGATGTGGAGAGAGAATGTGAGGAGGCCTTTTGTGACACATTTTACTGGGTGTGAGCCTTGTAGTGGGGATTATAATCCCACTTATACTTGGGAGGATTGTTGGAATGGGATGCAGAAGGCTTTGAACTTTGCAGATAATCAAGTGCTTAGGAGATATGGGTTTGTGCATCCAGACCTACTCAACTCATCATTGGTTACTCCTTTGCCGTTTGATTTCCCTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_transf_34

Protein Analysis

436

Amino Acids

50.43

Weight (kDa)

5.69

Isoelectric Point (pI)

38.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_34 PF05637 116 - 384 6.6e-52 galactosyl transferase GMA12/MNN10 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1158
Acc36I ACCTGC 1 cut(s) 435
AccB1I GGYRCC 1 cut(s) 613
AccB7I CCANNNNNTGG 1 cut(s) 643
AccI GTMKAC 2 cut(s) 435, 576
AciI CCGC 2 cut(s) 224, 534
AclWI GGATC 2 cut(s) 408, 572
AcuI CTGAAG 1 cut(s) 896
AcyI GRCGYC 1 cut(s) 585
AdeI CACNNNGTG 1 cut(s) 670
AfaI GTAC 4 cut(s) 518, 629, 923, 983
AfiI CCNNNNNNNGG 6 cut(s) 332, 397, 507, 553, 643, 1148
AgeI ACCGGT 2 cut(s) 362, 500
AgsI TTSAA 3 cut(s) 424, 610, 1210
AjnI CCWGG 1 cut(s) 835
AluBI AGCT 5 cut(s) 159, 261, 684, 829, 936
AluI AGCT 5 cut(s) 159, 261, 684, 829, 936
Alw26I GTCTC 2 cut(s) 409, 794
AlwI GGATC 2 cut(s) 408, 572
AoxI GGCC 7 cut(s) 510, 543, 756, 766, 775, 958, 1109
ApaI GGGCCC 1 cut(s) 770
ApeKI GCWGC 2 cut(s) 107, 676
AsiGI ACCGGT 2 cut(s) 362, 500
AspLEI GCGC 1 cut(s) 303
AspS9I GGNCC 9 cut(s) 487, 510, 544, 634, 732, 756, 766, 767, 776
AsuC2I CCSGG 1 cut(s) 392
AsuHPI GGTGA 7 cut(s) 172, 314, 353, 586, 682, 964, 1048
AvaII GGWCC 3 cut(s) 487, 634, 732
BaeGI GKGCMC 2 cut(s) 136, 770
BanI GGYRCC 1 cut(s) 613
BanII GRGCYC 2 cut(s) 67, 770
BbvCI CCTCAGC 1 cut(s) 314
BbvI GCAGC 2 cut(s) 119, 688
BccI CCATC 4 cut(s) 77, 182, 555, 950
BceAI ACGGC 1 cut(s) 1276
BciT130I CCWGG 1 cut(s) 837
BciVI GTATCC 1 cut(s) 843
BcnI CCSGG 1 cut(s) 392
BcoDI GTCTC 2 cut(s) 409, 794
BfaI CTAG 1 cut(s) 690
BfmI CTRYAG 1 cut(s) 442
BfuAI ACCTGC 1 cut(s) 435
BfuI GTATCC 1 cut(s) 843
BglI GCCNNNNNGGC 2 cut(s) 542, 774
BisI GCNGC 3 cut(s) 108, 534, 677
BlsI GCNGC 3 cut(s) 109, 535, 678
Bme1390I CCNGG 2 cut(s) 392, 837
Bme18I GGWCC 3 cut(s) 487, 634, 732
BmgT120I GGNCC 9 cut(s) 487, 510, 544, 634, 732, 756, 766, 767, 776
BmiI GGNNCC 5 cut(s) 7, 489, 499, 615, 768
BmrFI CCNGG 2 cut(s) 392, 837
BmrI ACTGGG 3 cut(s) 298, 580, 1140
BmsI GCATC 2 cut(s) 1185, 1261
BmuI ACTGGG 3 cut(s) 298, 580, 1140
BoxI GACNNNNGTC 1 cut(s) 692
Bpu10I CCTNAGC 2 cut(s) 314, 1232
BpuEI CTTGAG 2 cut(s) 183, 803
BpuMI CCSGG 1 cut(s) 392
Bsa29I ATCGAT 1 cut(s) 747
BsaBI GATNNNNATC 1 cut(s) 1158
BsaHI GRCGYC 1 cut(s) 585
BsaI GGTCTC 1 cut(s) 794
BsaJI CCNNGG 4 cut(s) 111, 537, 735, 836
BsaWI WCCGGW 2 cut(s) 362, 500
BsaXI ACNNNNNCTCC 2 cut(s) 905, 935
Bsc4I CCNNNNNNNGG 6 cut(s) 332, 397, 507, 553, 643, 1148
Bse118I RCCGGY 2 cut(s) 362, 500
Bse1I ACTGG 6 cut(s) 293, 575, 727, 850, 944, 1135
Bse3DI GCAATG 1 cut(s) 812
Bse8I GATNNNNATC 1 cut(s) 1158
BseBI CCWGG 1 cut(s) 837
BseCI ATCGAT 1 cut(s) 747
BseDI CCNNGG 4 cut(s) 111, 537, 735, 836
BseGI GGATG 7 cut(s) 32, 298, 547, 961, 1092, 1200, 1252
BseJI GATNNNNATC 1 cut(s) 1158
BseLI CCNNNNNNNGG 6 cut(s) 332, 397, 507, 553, 643, 1148
BseMI GCAATG 1 cut(s) 812
BseMII CTCAG 7 cut(s) 271, 279, 305, 383, 541, 1004, 1020
BseNI ACTGG 6 cut(s) 293, 575, 727, 850, 944, 1135
BseRI GAGGAG 3 cut(s) 1030, 1033, 1120
BseSI GKGCMC 2 cut(s) 136, 770
BseXI GCAGC 2 cut(s) 119, 688
BseYI CCCAGC 1 cut(s) 155
BshFI GGCC 7 cut(s) 512, 545, 758, 768, 777, 960, 1111
BshNI GGYRCC 1 cut(s) 613
BshTI ACCGGT 2 cut(s) 362, 500
BshVI ATCGAT 1 cut(s) 747
BsiSI CCGG 3 cut(s) 363, 392, 501
BslFI GGGAC 1 cut(s) 911
BslI CCNNNNNNNGG 6 cut(s) 332, 397, 507, 553, 643, 1148
BsmAI GTCTC 2 cut(s) 409, 794
BsmFI GGGAC 1 cut(s) 911
BsnI GGCC 7 cut(s) 512, 545, 758, 768, 777, 960, 1111
Bso31I GGTCTC 1 cut(s) 794
Bsp120I GGGCCC 1 cut(s) 766
Bsp1286I GDGCHC 3 cut(s) 67, 136, 770
Bsp143I GATC 2 cut(s) 400, 564
Bsp19I CCATGG 2 cut(s) 111, 537
BspACI CCGC 2 cut(s) 224, 534
BspANI GGCC 7 cut(s) 512, 545, 758, 768, 777, 960, 1111
BspCNI CTCAG 7 cut(s) 270, 278, 306, 382, 540, 1005, 1021
BspDI ATCGAT 1 cut(s) 747
BspLI GGNNCC 5 cut(s) 7, 489, 499, 615, 768
BspMAI CTGCAG 1 cut(s) 446
BspMI ACCTGC 1 cut(s) 435
BspPI GGATC 2 cut(s) 408, 572
BspT107I GGYRCC 1 cut(s) 613
BspTNI GGTCTC 1 cut(s) 794
BsrDI GCAATG 1 cut(s) 812
BsrFI RCCGGY 2 cut(s) 362, 500
BsrI ACTGG 6 cut(s) 293, 575, 727, 850, 944, 1135
BssAI RCCGGY 2 cut(s) 362, 500
BssECI CCNNGG 4 cut(s) 111, 537, 735, 836
BssMI GATC 2 cut(s) 400, 564
BssNI GRCGYC 1 cut(s) 585
BssT1I CCWWGG 3 cut(s) 111, 537, 735
Bst2UI CCWGG 1 cut(s) 837
Bst4CI ACNGT 2 cut(s) 411, 420
Bst6I CTCTTC 2 cut(s) 29, 98
BstACI GRCGYC 1 cut(s) 585
BstC8I GCNNGC 2 cut(s) 760, 1026
BstDEI CTNAG 8 cut(s) 257, 265, 314, 369, 527, 1013, 1029, 1232
BstDSI CCRYGG 2 cut(s) 111, 537
BstF5I GGATG 7 cut(s) 32, 298, 547, 961, 1092, 1200, 1252
BstHHI GCGC 1 cut(s) 303
BstKTI GATC 2 cut(s) 403, 567
BstMAI GTCTC 2 cut(s) 409, 794
BstMBI GATC 2 cut(s) 400, 564
BstMWI GCNNNNNNNGC 4 cut(s) 113, 542, 690, 774
BstNI CCWGG 1 cut(s) 837
BstNSI RCATGY 1 cut(s) 1028
BstPAI GACNNNNGTC 1 cut(s) 692
BstSCI CCNGG 2 cut(s) 390, 835
BstSFI CTRYAG 1 cut(s) 442
BstSLI GKGCMC 2 cut(s) 136, 770
BstV1I GCAGC 2 cut(s) 119, 688
BstX2I RGATCY 1 cut(s) 564
BstYI RGATCY 1 cut(s) 564
Bsu15I ATCGAT 1 cut(s) 747
BsuI GTATCC 1 cut(s) 843
BsuRI GGCC 7 cut(s) 512, 545, 758, 768, 777, 960, 1111
BsuTUI ATCGAT 1 cut(s) 747
BtgI CCRYGG 2 cut(s) 111, 537
BtsCI GGATG 7 cut(s) 32, 298, 547, 961, 1092, 1200, 1252
BtsIMutI CAGTG 1 cut(s) 734
BveI ACCTGC 1 cut(s) 435
Cac8I GCNNGC 2 cut(s) 760, 1026
CfoI GCGC 1 cut(s) 303
Cfr10I RCCGGY 2 cut(s) 362, 500
Cfr13I GGNCC 9 cut(s) 487, 510, 544, 634, 732, 756, 766, 767, 776
ClaI ATCGAT 1 cut(s) 747
CseI GACGC 2 cut(s) 593, 682
Csp6I GTAC 4 cut(s) 517, 628, 922, 982
CspAI ACCGGT 2 cut(s) 362, 500
CviAII CATG 9 cut(s) 112, 452, 538, 601, 653, 667, 763, 985, 1025
CviQI GTAC 4 cut(s) 517, 628, 922, 982
DdeI CTNAG 8 cut(s) 257, 265, 314, 369, 527, 1013, 1029, 1232
DpnI GATC 2 cut(s) 402, 566
DpnII GATC 2 cut(s) 400, 564
DraIII CACNNNGTG 1 cut(s) 670
Eam1104I CTCTTC 2 cut(s) 29, 98
EarI CTCTTC 2 cut(s) 29, 98
Eco130I CCWWGG 3 cut(s) 111, 537, 735
Eco147I AGGCCT 1 cut(s) 1111
Eco24I GRGCYC 2 cut(s) 67, 770
Eco31I GGTCTC 1 cut(s) 794
Eco47I GGWCC 3 cut(s) 487, 634, 732
Eco57I CTGAAG 1 cut(s) 896
EcoO109I RGGNCCY 1 cut(s) 776
EcoRII CCWGG 1 cut(s) 835
EcoT14I CCWWGG 3 cut(s) 111, 537, 735
EcoT38I GRGCYC 2 cut(s) 67, 770
ErhI CCWWGG 3 cut(s) 111, 537, 735
FaeI CATG 9 cut(s) 115, 455, 541, 604, 656, 670, 766, 988, 1028
FalI AAGNNNNNCTT 2 cut(s) 893, 925
FaqI GGGAC 1 cut(s) 911
FatI CATG 9 cut(s) 111, 451, 537, 600, 652, 666, 762, 984, 1024
FauI CCCGC 1 cut(s) 231
FblI GTMKAC 2 cut(s) 435, 576
Fnu4HI GCNGC 3 cut(s) 108, 534, 677
FokI GGATG 7 cut(s) 19, 305, 534, 968, 1099, 1207, 1239
FriOI GRGCYC 2 cut(s) 67, 770
Fsp4HI GCNGC 3 cut(s) 108, 534, 677
FspBI CTAG 1 cut(s) 690
GlaI GCGC 1 cut(s) 302
GluI GCNGC 3 cut(s) 108, 534, 677
GsaI CCCAGC 1 cut(s) 159
HaeIII GGCC 7 cut(s) 512, 545, 758, 768, 777, 960, 1111
HapII CCGG 3 cut(s) 363, 392, 501
HgaI GACGC 2 cut(s) 593, 682
HhaI GCGC 1 cut(s) 303
Hin1I GRCGYC 1 cut(s) 585
Hin1II CATG 9 cut(s) 115, 455, 541, 604, 656, 670, 766, 988, 1028
Hin6I GCGC 1 cut(s) 301
HinP1I GCGC 1 cut(s) 301
HincII GTYRAC 1 cut(s) 577
HindII GTYRAC 1 cut(s) 577
HinfI GANTC 2 cut(s) 523, 578
HpaII CCGG 3 cut(s) 363, 392, 501
HphI GGTGA 7 cut(s) 172, 314, 353, 586, 682, 964, 1048
Hpy166II GTNNAC 4 cut(s) 322, 436, 577, 907
Hpy188I TCNGA 4 cut(s) 208, 530, 583, 844
Hpy188III TCNNGA 5 cut(s) 424, 485, 551, 712, 1256
Hpy8I GTNNAC 4 cut(s) 322, 436, 577, 907
Hpy99I CGWCG 2 cut(s) 238, 248
HpyAV CCTTC 8 cut(s) 78, 154, 175, 384, 878, 1027, 1069, 1195
HpyCH4III ACNGT 2 cut(s) 411, 420
HpyCH4IV ACGT 1 cut(s) 236
HpyCH4V TGCA 4 cut(s) 444, 1198, 1217, 1252
HpyF10VI GCNNNNNNNGC 4 cut(s) 113, 542, 690, 774
HpyF3I CTNAG 8 cut(s) 257, 265, 314, 369, 527, 1013, 1029, 1232
HpySE526I ACGT 1 cut(s) 236
Hsp92I GRCGYC 1 cut(s) 585
Hsp92II CATG 9 cut(s) 115, 455, 541, 604, 656, 670, 766, 988, 1028
HspAI GCGC 1 cut(s) 301
Kzo9I GATC 2 cut(s) 400, 564
LmnI GCTCC 1 cut(s) 104
Lsp1109I GCAGC 2 cut(s) 119, 688
LweI GCATC 2 cut(s) 1185, 1261
MaeI CTAG 1 cut(s) 690
MaeII ACGT 1 cut(s) 236
MaeIII GTNAC 3 cut(s) 358, 1117, 1279
MalI GATC 2 cut(s) 402, 566
MboI GATC 2 cut(s) 400, 564
MboII GAAGA 3 cut(s) 16, 85, 473
MflI RGATCY 1 cut(s) 564
MhlI GDGCHC 3 cut(s) 67, 136, 770
MluCI AATT 1 cut(s) 925
MlyI GAGTC 1 cut(s) 572
MmeI TCCRAC 1 cut(s) 1166
MslI CAYNNNNRTG 2 cut(s) 456, 599
MspI CCGG 3 cut(s) 363, 392, 501
MspR9I CCNGG 2 cut(s) 392, 837
MvaI CCWGG 1 cut(s) 837
MwoI GCNNNNNNNGC 4 cut(s) 113, 542, 690, 774
NciI CCSGG 1 cut(s) 392
NcoI CCATGG 2 cut(s) 111, 537
NdeII GATC 2 cut(s) 400, 564
NlaIII CATG 9 cut(s) 115, 455, 541, 604, 656, 670, 766, 988, 1028
NlaIV GGNNCC 5 cut(s) 7, 489, 499, 615, 768
NmuCI GTSAC 1 cut(s) 1117
NspI RCATGY 1 cut(s) 1028
PaeI GCATGC 1 cut(s) 1028
PceI AGGCCT 1 cut(s) 1111
PfeI GAWTC 1 cut(s) 523
PflMI CCANNNNNTGG 1 cut(s) 643
PinAI ACCGGT 2 cut(s) 362, 500
PkrI GCNGC 3 cut(s) 109, 535, 678
PleI GAGTC 1 cut(s) 572
PpsI GAGTC 1 cut(s) 572
PshAI GACNNNNGTC 1 cut(s) 692
PsiI TTATAA 1 cut(s) 1158
Psp6I CCWGG 1 cut(s) 835
PspFI CCCAGC 1 cut(s) 155
PspGI CCWGG 1 cut(s) 835
PspN4I GGNNCC 5 cut(s) 7, 489, 499, 615, 768
PspOMI GGGCCC 1 cut(s) 766
PspPI GGNCC 9 cut(s) 487, 510, 544, 634, 732, 756, 766, 767, 776
PstI CTGCAG 1 cut(s) 446
PsuI RGATCY 1 cut(s) 564
RsaI GTAC 4 cut(s) 518, 629, 923, 983
RsaNI GTAC 4 cut(s) 517, 628, 922, 982
RseI CAYNNNNRTG 2 cut(s) 456, 599
SalI GTCGAC 1 cut(s) 575
SatI GCNGC 3 cut(s) 108, 534, 677
Sau3AI GATC 2 cut(s) 400, 564
Sau96I GGNCC 9 cut(s) 487, 510, 544, 634, 732, 756, 766, 767, 776
SchI GAGTC 1 cut(s) 572
ScrFI CCNGG 2 cut(s) 392, 837
SduI GDGCHC 3 cut(s) 67, 136, 770
SfaNI GCATC 2 cut(s) 1185, 1261
SfcI CTRYAG 1 cut(s) 442
SfiI GGCCNNNNNGGCC 1 cut(s) 774
SinI GGWCC 3 cut(s) 487, 634, 732
SmiMI CAYNNNNRTG 2 cut(s) 456, 599
SmlI CTYRAG 2 cut(s) 198, 818
SmoI CTYRAG 2 cut(s) 198, 818
SphI GCATGC 1 cut(s) 1028
Sse9I AATT 1 cut(s) 925
SseBI AGGCCT 1 cut(s) 1111
SsiI CCGC 2 cut(s) 224, 534
SspMI CTAG 1 cut(s) 690
StuI AGGCCT 1 cut(s) 1111
StyD4I CCNGG 2 cut(s) 390, 835
StyI CCWWGG 3 cut(s) 111, 537, 735
TaaI ACNGT 2 cut(s) 411, 420
TaiI ACGT 1 cut(s) 239
TaqI TCGA 3 cut(s) 168, 576, 747
TasI AATT 1 cut(s) 925
TatI WGTACW 2 cut(s) 627, 921
TauI GCSGC 1 cut(s) 536
TfiI GAWTC 1 cut(s) 523
TscAI CASTG 1 cut(s) 734
TseFI GTSAC 1 cut(s) 1117
TseI GCWGC 2 cut(s) 107, 676
Tsp45I GTSAC 1 cut(s) 1117
TspDTI ATGAA 6 cut(s) 136, 440, 641, 733, 765, 1088
TspRI CASTG 1 cut(s) 734
Van91I CCANNNNNTGG 1 cut(s) 643
VpaK11BI GGWCC 3 cut(s) 487, 634, 732
XceI RCATGY 1 cut(s) 1028
XcmI CCANNNNNNNNNTGG 2 cut(s) 558, 982
XmiI GTMKAC 2 cut(s) 435, 576
XspI CTAG 1 cut(s) 690
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.