Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002372.1

Orthogroup ID

OG0001277

Physical Location & Seq

Genomic Coordinates Reverse (-)

98492 .. 99143

Gene Structure 652 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002372.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

atgctagcgtgggctagctgtgtgcagtggttgcggaggcagtggccgagcgtagggctgcagggctgtgaggctagggcttgcggcagattaagtgagaagagttttagggttagagttagggctcgtgctgataacatgtttgataacctgacccagagtgacaccgagatggagatgaatgacagggttttgaggacgagacatgcagagaaagtgaatggtttggaggtttgggagcgagggaagtatcttaaggggcgcgagaggagaccatttgtgactcattttactgggtgtcaaccatgtaatggagagcataatccacaatataaaggagatacttgttggaatgagatgaagagggctttgaattttgcggataatcaagtgtgttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0006080 GO:0008150 GO:0008152 GO:0008378 GO:0009058 GO:0009059 GO:0009987 GO:0010191 GO:0010192 GO:0010392 GO:0012505 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0031410 GO:0031982 GO:0031984 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051069 GO:0051070 GO:0071704 GO:0097708 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_34

Protein Analysis

132

Amino Acids

15.47

Weight (kDa)

9.13

Isoelectric Point (pI)

34.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001277)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22900 AT4G37690 AT4G38310
fragaria_vesca	FvH4_1g17940 FvH4_1g17941 FvH4_1g17941 FvH4_1g17941 FvH4_3g15850 FvH4_3g15870
malus_domestica	MD02G1188000.v1.1 MD02G1188100.v1.1 MD05G1219400.v1.1 MD10G1201500.v1.1 MD10G1201600.v1.1 MD10G1201700.v1.1 MD10G1201800.v1.1 MD15G1298900.v1.1
prunus_persica	Prupe.4G140500_v2.0.a1 Prupe.6G219000_v2.0.a1 Prupe.6G219100_v2.0.a1
pyrus_communis	pycom02g15280 pycom05g20080 pycom09g14400 pycom10g17250 pycom10g17260
rosa_chinensis	RchiOBHm_Chr2g0108371 RchiOBHm_Chr5g0026661
rosa_laevigata	RLG00000017664 RLG00000017665 RLG00000017961 RLG00000032944
rosa_multiflora	Rmu_co8428357.1_g000001 Rmu_sc0002372.1_g000017 Rmu_sc0002372.1_g000021 Rmu_sc0004490.1_g000008 Rmu_sc0009208.1_g000005
rosa_roxburghii	Rroxscaffold_1G00052800 Rroxscaffold_2G00135190 Rroxscaffold_2G00135200
rosa_rugosa	Rorug02G0152300 Rorug05G0094600
rosa_samantha	Rh2AG201400 Rh2AG201500 Rh2BG214200 Rh2BG214400 Rh2CG205700 Rh2DG208700 Rh2DG208800 Rh5AG188200 Rh5BG184500 Rh5CG204400 Rh5DG186800
rosa_wichuraiana	Rw2G016030 Rw2G016090 Rw5G017030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	311
AccII	CGCG	1 cut(s)	264
AciI	CCGC	3 cut(s)	34, 84, 380
AcoI	YGGCCR	1 cut(s)	44
AcsI	RAATTY	1 cut(s)	373
AfiI	CCNNNNNNNGG	2 cut(s)	53, 311
AflII	CTTAAG	1 cut(s)	254
AflIII	ACRYGT	1 cut(s)	138
AgsI	TTSAA	1 cut(s)	373
AluBI	AGCT	1 cut(s)	18
AluI	AGCT	1 cut(s)	18
Alw26I	GTCTC	2 cut(s)	196, 265
AoxI	GGCC	1 cut(s)	44
ApeKI	GCWGC	1 cut(s)	58
ApoI	RAATTY	1 cut(s)	373
AspLEI	GCGC	1 cut(s)	264
AsuNHI	GCTAGC	2 cut(s)	4, 14
BanII	GRGCYC	1 cut(s)	127
BauI	CACGAG	1 cut(s)	126
BbvI	GCAGC	1 cut(s)	45
BccI	CCATC	1 cut(s)	166
BcoDI	GTCTC	2 cut(s)	196, 265
BfaI	CTAG	3 cut(s)	5, 15, 75
BfmI	CTRYAG	1 cut(s)	59
BfrI	CTTAAG	1 cut(s)	254
BisI	GCNGC	2 cut(s)	59, 85
BlsI	GCNGC	2 cut(s)	60, 86
BmrI	ACTGGG	1 cut(s)	303
BmtI	GCTAGC	2 cut(s)	8, 18
BmuI	ACTGGG	1 cut(s)	303
BsaI	GGTCTC	1 cut(s)	265
Bsc4I	CCNNNNNNNGG	2 cut(s)	53, 311
Bse1I	ACTGG	1 cut(s)	298
BseLI	CCNNNNNNNGG	2 cut(s)	53, 311
BseNI	ACTGG	1 cut(s)	298
BseRI	GAGGAG	1 cut(s)	283
BseXI	GCAGC	1 cut(s)	45
BsgI	GTGCAG	1 cut(s)	44
Bsh1236I	CGCG	1 cut(s)	264
BshFI	GGCC	1 cut(s)	46
BslI	CCNNNNNNNGG	2 cut(s)	53, 311
BsmAI	GTCTC	2 cut(s)	196, 265
BsnI	GGCC	1 cut(s)	46
Bso31I	GGTCTC	1 cut(s)	265
Bsp1286I	GDGCHC	1 cut(s)	127
BspACI	CCGC	3 cut(s)	34, 84, 380
BspANI	GGCC	1 cut(s)	46
BspFNI	CGCG	1 cut(s)	264
BspMAI	CTGCAG	1 cut(s)	63
BspOI	GCTAGC	2 cut(s)	8, 18
BspTI	CTTAAG	1 cut(s)	254
BspTNI	GGTCTC	1 cut(s)	265
BsrI	ACTGG	1 cut(s)	298
BssSI	CACGAG	1 cut(s)	126
Bst2BI	CACGAG	1 cut(s)	126
Bst6I	CTCTTC	2 cut(s)	95, 356
BstAFI	CTTAAG	1 cut(s)	254
BstAPI	GCANNNNNTGC	1 cut(s)	31
BstC8I	GCNNGC	3 cut(s)	6, 16, 82
BstFNI	CGCG	1 cut(s)	264
BstHHI	GCGC	1 cut(s)	264
BstMAI	GTCTC	2 cut(s)	196, 265
BstMWI	GCNNNNNNNGC	1 cut(s)	31
BstNSI	RCATGY	2 cut(s)	142, 209
BstSFI	CTRYAG	1 cut(s)	59
BstUI	CGCG	1 cut(s)	264
BstV1I	GCAGC	1 cut(s)	45
BsuRI	GGCC	1 cut(s)	46
BtsI	GCAGTG	2 cut(s)	32, 47
BtsIMutI	CAGTG	2 cut(s)	32, 47
Cac8I	GCNNGC	3 cut(s)	6, 16, 82
CfoI	GCGC	1 cut(s)	264
CviAII	CATG	3 cut(s)	139, 206, 306
CviJI	RGCY	9 cut(s)	14, 18, 46, 58, 66, 74, 80, 125, 368
CviKI_1	RGCY	9 cut(s)	14, 18, 46, 58, 66, 74, 80, 125, 368
EaeI	YGGCCR	1 cut(s)	44
Eam1104I	CTCTTC	2 cut(s)	95, 356
EarI	CTCTTC	2 cut(s)	95, 356
Eco24I	GRGCYC	1 cut(s)	127
Eco31I	GGTCTC	1 cut(s)	265
EcoT38I	GRGCYC	1 cut(s)	127
FaeI	CATG	3 cut(s)	142, 209, 309
FaiI	YATR	5 cut(s)	140, 207, 307, 321, 333
FatI	CATG	3 cut(s)	138, 205, 305
Fnu4HI	GCNGC	2 cut(s)	59, 85
FriOI	GRGCYC	1 cut(s)	127
Fsp4HI	GCNGC	2 cut(s)	59, 85
FspBI	CTAG	3 cut(s)	5, 15, 75
GlaI	GCGC	1 cut(s)	263
GluI	GCNGC	2 cut(s)	59, 85
HaeIII	GGCC	1 cut(s)	46
HhaI	GCGC	1 cut(s)	264
Hin1II	CATG	3 cut(s)	142, 209, 309
Hin6I	GCGC	1 cut(s)	262
HinP1I	GCGC	1 cut(s)	262
HincII	GTYRAC	1 cut(s)	302
HindII	GTYRAC	1 cut(s)	302
HinfI	GANTC	1 cut(s)	283
Hpy166II	GTNNAC	1 cut(s)	302
Hpy8I	GTNNAC	1 cut(s)	302
HpyCH4V	TGCA	3 cut(s)	25, 61, 209
HpyF10VI	GCNNNNNNNGC	1 cut(s)	31
Hsp92II	CATG	3 cut(s)	142, 209, 309
HspAI	GCGC	1 cut(s)	262
LmnI	GCTCC	1 cut(s)	238
LpnPI	CCDG	5 cut(s)	47, 164, 170, 172, 279
Lsp1109I	GCAGC	1 cut(s)	45
MaeI	CTAG	3 cut(s)	5, 15, 75
MaeIII	GTNAC	2 cut(s)	161, 280
MboII	GAAGA	2 cut(s)	112, 373
MhlI	GDGCHC	1 cut(s)	127
MluCI	AATT	1 cut(s)	373
MlyI	GAGTC	1 cut(s)	277
MmeI	TCCRAC	1 cut(s)	329
MnlI	CCTC	7 cut(s)	30, 64, 189, 223, 236, 261, 357
MseI	TTAA	3 cut(s)	92, 255, 397
MslI	CAYNNNNRTG	1 cut(s)	170
MspCI	CTTAAG	1 cut(s)	254
MvnI	CGCG	1 cut(s)	264
MwoI	GCNNNNNNNGC	1 cut(s)	31
NheI	GCTAGC	2 cut(s)	4, 14
NlaIII	CATG	3 cut(s)	142, 209, 309
NmeAIII	GCCGAG	1 cut(s)	72
NmuCI	GTSAC	2 cut(s)	161, 280
NspI	RCATGY	2 cut(s)	142, 209
PciI	ACATGT	1 cut(s)	138
PflMI	CCANNNNNTGG	1 cut(s)	311
PkrI	GCNGC	2 cut(s)	60, 86
PleI	GAGTC	1 cut(s)	277
PpsI	GAGTC	1 cut(s)	277
PscI	ACATGT	1 cut(s)	138
PstI	CTGCAG	1 cut(s)	63
RseI	CAYNNNNRTG	1 cut(s)	170
SaqAI	TTAA	3 cut(s)	92, 255, 397
SatI	GCNGC	2 cut(s)	59, 85
SchI	GAGTC	1 cut(s)	277
SduI	GDGCHC	1 cut(s)	127
SetI	ASST	3 cut(s)	20, 153, 234
SfcI	CTRYAG	1 cut(s)	59
SmiMI	CAYNNNNRTG	1 cut(s)	170
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
Sse9I	AATT	1 cut(s)	373
SsiI	CCGC	3 cut(s)	34, 84, 380
SspMI	CTAG	3 cut(s)	5, 15, 75
TasI	AATT	1 cut(s)	373
TauI	GCSGC	1 cut(s)	87
Tru1I	TTAA	3 cut(s)	92, 255, 397
Tru9I	TTAA	3 cut(s)	92, 255, 397
TscAI	CASTG	2 cut(s)	32, 47
TseFI	GTSAC	2 cut(s)	161, 280
TseI	GCWGC	1 cut(s)	58
Tsp45I	GTSAC	2 cut(s)	161, 280
TspDTI	ATGAA	2 cut(s)	194, 374
TspRI	CASTG	2 cut(s)	32, 47
Van91I	CCANNNNNTGG	1 cut(s)	311
Vha464I	CTTAAG	1 cut(s)	254
XapI	RAATTY	1 cut(s)	373
XceI	RCATGY	2 cut(s)	142, 209
XspI	CTAG	3 cut(s)	5, 15, 75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.