RchiOBHm_Chr5g0026661

glycosyltransferase 7

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0001277
Physical Location & Seq
Forward (+)
20725792 .. 20727372
1581 bp
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UTR
Exon/CDS
Intron
PRQ30624

Sequence Viewer

Length: 1581 bp
ATGTTTTTGAAATCAATAAAATTCCAACCATACCCACTTTTGTCATTTTTATTTTTATATGGCTTTCGCCAGTTAAAGAAAAAAAAAAAAACGAAAGTACATGCATATTTTCCGGCAAGATTAGAACCATGTACTTTAATAACCAACAAACGAGGTTTTGGCATTACTGCACCTGTCAGTTATCTTCTTCTTCTTCCAGTACTTAAAAGTTCAACCTCACACAGAGAAAACCCAAAGCTATCAATCACTTCACAACTACCACCTTCTCAAATGGGTTCCCAAGAGTTCTCTCTCTTCCAAACATCCCCACACAAACGCTCACTTCTCCACAGAGCCCCTTCTCTAATCGCAGATGGCTTCCTCTTCGTTGGTGGAGCAGCCATGGCTTTATCTCTGGTTTGGGCACTAATCTCCTTCATAAACCCCAGCTCAACCTTCGACACCATCATCACCTACGACAACACCCCTCAAGGCCCTGACTTGGGCTACGACCCGCCAGAGCCGACGTTCTACGACGACCCGAATCTCAGCTACTCAGTTGGGGAAGCCATAAAAAACTGGGATGACAAGCGCAGAGAGTGGCTGAGGGTTCACCCTTCTTTTGGTGTTGGTGATAGGATTGTTCTTGTTACCGGTTCTCAGCCTTCGGTGTGTAAAAACCCGGTTGGGGATCATTTACAGTTGAGACTGTTCAAGAACAAAGTAGACTATTGCAGGTTTCACGGCTGTGAAGTGTTCTACAACAATGTTCTTCTGGACCCTAAAGGAACCGGTTTCTGGGCCAAGTACCCGATTCTCAGAGCCGCCATGGTGGCCCATCCAGAGGCAGAGTGGATCTACTGGGTCGACTCGGACGCCATTTTCACCGACATGGAGTTCAAGGTGCCATTGGAGAAGTACAAGGATCATAACTTGGTTGTTCATGGGTGGTGGCACATGGTGAAGCAGCAGAGCTGGACTAGCGTCAATGCTGGTGTGTTCTTGATTAGGAACTGCCAGTGGTCCTTGGAGTTCATCGATGAATGGGCCAGCATGGGCCCACAAGGCCCGGCCAAAGAGAAATGGGGGGAGACCCAGAAATCATTGCTCAAGGACAAGCTGTATCCAGGGTCAGATGACCAGTCTGCTCTTATCTACCTTCTGCTGAAGCAGAGGCAGAAATGGGGGGACAAGGTTTACTTGGAGAGTGAGTACAATTTCCAAAGCTACTGGCTTGGGGTGGTGGATGGCCTTGATAACATCACCAAAGGGTACATGGAGGTTGATAGAGAAATGGGGAAACTGAGGAGGAGGCATGCTGAGAAGGTGAGTGAGTTTTATGGGGAAATGAGAGAGCAGAACATGAAGGATAAGGGGATGTGGAGAGAGAATGTGAGGAGGCCTTTTGTGACACATTTTACTGGGTGTGAGCCTTGTAGTGGGGATTATAATCCCACTTATACTTGGGAGGATTGTTGGAATGGGATGCAGAAGGCTTTGAACTTTGCAGATAATCAAGTGCTTAGGAGATATGGGTTTGTGCATCCAGACCTACTGAACTCATCATTGGTTACTCCTTTGCCATTTGATTTCCCTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_transf_34

Protein Analysis

526

Amino Acids

60.73

Weight (kDa)

8.54

Isoelectric Point (pI)

37.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_34 PF05637 206 - 474 1.3e-51 galactosyl transferase GMA12/MNN10 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1428
Acc36I ACCTGC 1 cut(s) 705
AccB1I GGYRCC 1 cut(s) 883
AccI GTMKAC 2 cut(s) 705, 846
AciI CCGC 2 cut(s) 494, 804
AclWI GGATC 3 cut(s) 678, 842, 912
AcoI YGGCCR 1 cut(s) 1050
AcsI RAATTY 1 cut(s) 20
AcuI CTGAAG 1 cut(s) 1166
AcyI GRCGYC 1 cut(s) 855
AdeI CACNNNGTG 1 cut(s) 940
AfaI GTAC 7 cut(s) 99, 133, 201, 788, 899, 1193, 1253
AfiI CCNNNNNNNGG 7 cut(s) 481, 482, 602, 667, 777, 823, 1418
AgeI ACCGGT 2 cut(s) 632, 770
AgsI TTSAA 5 cut(s) 10, 213, 694, 880, 1480
AjnI CCWGG 1 cut(s) 1105
AjuI GAANNNNNNNTTGG 2 cut(s) 1529, 1561
AleI CACNNNNGTG 1 cut(s) 726
AluBI AGCT 6 cut(s) 238, 429, 531, 954, 1099, 1206
AluI AGCT 6 cut(s) 238, 429, 531, 954, 1099, 1206
Alw26I GTCTC 2 cut(s) 679, 1064
AlwI GGATC 3 cut(s) 678, 842, 912
AoxI GGCC 9 cut(s) 472, 780, 813, 1026, 1036, 1045, 1050, 1228, 1379
ApaI GGGCCC 1 cut(s) 1040
ApeKI GCWGC 2 cut(s) 377, 946
ApoI RAATTY 1 cut(s) 20
AsiGI ACCGGT 2 cut(s) 632, 770
AspLEI GCGC 1 cut(s) 573
AspS9I GGNCC 9 cut(s) 473, 757, 780, 814, 1002, 1026, 1036, 1037, 1046
AsuC2I CCSGG 2 cut(s) 662, 1049
AsuHPI GGTGA 7 cut(s) 442, 584, 623, 856, 952, 1234, 1318
AvaII GGWCC 2 cut(s) 757, 1002
BaeGI GKGCMC 2 cut(s) 406, 1040
BanI GGYRCC 1 cut(s) 883
BanII GRGCYC 2 cut(s) 337, 1040
BbvCI CCTCAGC 1 cut(s) 584
BbvI GCAGC 2 cut(s) 389, 958
BccI CCATC 4 cut(s) 347, 452, 825, 1220
BceAI ACGGC 1 cut(s) 739
BciT130I CCWGG 1 cut(s) 1107
BciVI GTATCC 1 cut(s) 1113
BcnI CCSGG 2 cut(s) 662, 1049
BcoDI GTCTC 2 cut(s) 679, 1064
BfaI CTAG 1 cut(s) 960
BfuAI ACCTGC 1 cut(s) 705
BfuI GTATCC 1 cut(s) 1113
BglI GCCNNNNNGGC 2 cut(s) 812, 1044
BisI GCNGC 3 cut(s) 378, 804, 947
BlsI GCNGC 3 cut(s) 379, 805, 948
BmcAI AGTACT 1 cut(s) 201
Bme1390I CCNGG 3 cut(s) 662, 1049, 1107
Bme18I GGWCC 2 cut(s) 757, 1002
BmgT120I GGNCC 9 cut(s) 473, 757, 780, 814, 1002, 1026, 1036, 1037, 1046
BmiI GGNNCC 5 cut(s) 277, 759, 769, 885, 1038
BmrFI CCNGG 3 cut(s) 662, 1049, 1107
BmrI ACTGGG 3 cut(s) 568, 850, 1410
BmsI GCATC 2 cut(s) 1455, 1531
BmuI ACTGGG 3 cut(s) 568, 850, 1410
BoxI GACNNNNGTC 1 cut(s) 962
Bpu10I CCTNAGC 2 cut(s) 584, 1502
BpuEI CTTGAG 2 cut(s) 453, 1073
BpuMI CCSGG 2 cut(s) 662, 1049
Bsa29I ATCGAT 1 cut(s) 1017
BsaBI GATNNNNATC 1 cut(s) 1428
BsaHI GRCGYC 1 cut(s) 855
BsaI GGTCTC 1 cut(s) 1064
BsaJI CCNNGG 4 cut(s) 381, 807, 1005, 1106
BsaWI WCCGGW 2 cut(s) 632, 770
BsaXI ACNNNNNCTCC 2 cut(s) 1175, 1205
Bsc4I CCNNNNNNNGG 7 cut(s) 481, 482, 602, 667, 777, 823, 1418
Bse118I RCCGGY 2 cut(s) 632, 770
Bse1I ACTGG 8 cut(s) 70, 197, 563, 845, 997, 1120, 1214, 1405
Bse3DI GCAATG 1 cut(s) 1082
Bse8I GATNNNNATC 1 cut(s) 1428
BseBI CCWGG 1 cut(s) 1107
BseCI ATCGAT 1 cut(s) 1017
BseDI CCNNGG 4 cut(s) 381, 807, 1005, 1106
BseGI GGATG 7 cut(s) 302, 568, 817, 1231, 1362, 1470, 1522
BseJI GATNNNNATC 1 cut(s) 1428
BseLI CCNNNNNNNGG 7 cut(s) 481, 482, 602, 667, 777, 823, 1418
BseMI GCAATG 1 cut(s) 1082
BseMII CTCAG 7 cut(s) 541, 549, 575, 653, 811, 1274, 1290
BseNI ACTGG 8 cut(s) 70, 197, 563, 845, 997, 1120, 1214, 1405
BseRI GAGGAG 3 cut(s) 1300, 1303, 1390
BseSI GKGCMC 2 cut(s) 406, 1040
BseXI GCAGC 2 cut(s) 389, 958
BseYI CCCAGC 1 cut(s) 425
BsgI GTGCAG 1 cut(s) 153
BshFI GGCC 9 cut(s) 474, 782, 815, 1028, 1038, 1047, 1052, 1230, 1381
BshNI GGYRCC 1 cut(s) 883
BshTI ACCGGT 2 cut(s) 632, 770
BshVI ATCGAT 1 cut(s) 1017
BsiSI CCGG 5 cut(s) 113, 633, 662, 771, 1049
BslFI GGGAC 1 cut(s) 1181
BslI CCNNNNNNNGG 7 cut(s) 481, 482, 602, 667, 777, 823, 1418
BsmAI GTCTC 2 cut(s) 679, 1064
BsmFI GGGAC 1 cut(s) 1181
BsnI GGCC 9 cut(s) 474, 782, 815, 1028, 1038, 1047, 1052, 1230, 1381
Bso31I GGTCTC 1 cut(s) 1064
Bsp120I GGGCCC 1 cut(s) 1036
Bsp1286I GDGCHC 3 cut(s) 337, 406, 1040
Bsp143I GATC 3 cut(s) 670, 834, 904
Bsp19I CCATGG 2 cut(s) 381, 807
BspACI CCGC 2 cut(s) 494, 804
BspANI GGCC 9 cut(s) 474, 782, 815, 1028, 1038, 1047, 1052, 1230, 1381
BspCNI CTCAG 7 cut(s) 540, 548, 576, 652, 810, 1275, 1291
BspDI ATCGAT 1 cut(s) 1017
BspLI GGNNCC 5 cut(s) 277, 759, 769, 885, 1038
BspMI ACCTGC 1 cut(s) 705
BspPI GGATC 3 cut(s) 678, 842, 912
BspT107I GGYRCC 1 cut(s) 883
BspTNI GGTCTC 1 cut(s) 1064
BsrDI GCAATG 1 cut(s) 1082
BsrFI RCCGGY 2 cut(s) 632, 770
BsrI ACTGG 8 cut(s) 70, 197, 563, 845, 997, 1120, 1214, 1405
BssAI RCCGGY 2 cut(s) 632, 770
BssECI CCNNGG 4 cut(s) 381, 807, 1005, 1106
BssMI GATC 3 cut(s) 670, 834, 904
BssNI GRCGYC 1 cut(s) 855
BssT1I CCWWGG 3 cut(s) 381, 807, 1005
Bst2UI CCWGG 1 cut(s) 1107
Bst4CI ACNGT 2 cut(s) 681, 690
Bst6I CTCTTC 2 cut(s) 299, 368
BstACI GRCGYC 1 cut(s) 855
BstC8I GCNNGC 2 cut(s) 1030, 1296
BstDEI CTNAG 8 cut(s) 527, 535, 584, 639, 797, 1283, 1299, 1502
BstDSI CCRYGG 2 cut(s) 381, 807
BstF5I GGATG 7 cut(s) 302, 568, 817, 1231, 1362, 1470, 1522
BstHHI GCGC 1 cut(s) 573
BstKTI GATC 3 cut(s) 673, 837, 907
BstMAI GTCTC 2 cut(s) 679, 1064
BstMBI GATC 3 cut(s) 670, 834, 904
BstMWI GCNNNNNNNGC 4 cut(s) 383, 812, 960, 1044
BstNI CCWGG 1 cut(s) 1107
BstNSI RCATGY 2 cut(s) 104, 1298
BstPAI GACNNNNGTC 1 cut(s) 962
BstSCI CCNGG 3 cut(s) 660, 1047, 1105
BstSLI GKGCMC 2 cut(s) 406, 1040
BstV1I GCAGC 2 cut(s) 389, 958
BstX2I RGATCY 1 cut(s) 834
BstYI RGATCY 1 cut(s) 834
Bsu15I ATCGAT 1 cut(s) 1017
BsuI GTATCC 1 cut(s) 1113
BsuRI GGCC 9 cut(s) 474, 782, 815, 1028, 1038, 1047, 1052, 1230, 1381
BsuTUI ATCGAT 1 cut(s) 1017
BtgI CCRYGG 2 cut(s) 381, 807
BtsCI GGATG 7 cut(s) 302, 568, 817, 1231, 1362, 1470, 1522
BtsIMutI CAGTG 1 cut(s) 1004
BveI ACCTGC 1 cut(s) 705
Cac8I GCNNGC 2 cut(s) 1030, 1296
CfoI GCGC 1 cut(s) 573
Cfr10I RCCGGY 2 cut(s) 632, 770
Cfr13I GGNCC 9 cut(s) 473, 757, 780, 814, 1002, 1026, 1036, 1037, 1046
ClaI ATCGAT 1 cut(s) 1017
CseI GACGC 2 cut(s) 863, 952
Csp6I GTAC 7 cut(s) 98, 132, 200, 787, 898, 1192, 1252
CspAI ACCGGT 2 cut(s) 632, 770
CviQI GTAC 7 cut(s) 98, 132, 200, 787, 898, 1192, 1252
DdeI CTNAG 8 cut(s) 527, 535, 584, 639, 797, 1283, 1299, 1502
DpnI GATC 3 cut(s) 672, 836, 906
DpnII GATC 3 cut(s) 670, 834, 904
DraIII CACNNNGTG 1 cut(s) 940
EaeI YGGCCR 1 cut(s) 1050
Eam1104I CTCTTC 2 cut(s) 299, 368
EarI CTCTTC 2 cut(s) 299, 368
Eco130I CCWWGG 3 cut(s) 381, 807, 1005
Eco147I AGGCCT 1 cut(s) 1381
Eco24I GRGCYC 2 cut(s) 337, 1040
Eco31I GGTCTC 1 cut(s) 1064
Eco47I GGWCC 2 cut(s) 757, 1002
Eco57I CTGAAG 1 cut(s) 1166
EcoO109I RGGNCCY 1 cut(s) 473
EcoRII CCWGG 1 cut(s) 1105
EcoT14I CCWWGG 3 cut(s) 381, 807, 1005
EcoT22I ATGCAT 1 cut(s) 106
EcoT38I GRGCYC 2 cut(s) 337, 1040
ErhI CCWWGG 3 cut(s) 381, 807, 1005
FalI AAGNNNNNCTT 2 cut(s) 1163, 1195
FaqI GGGAC 1 cut(s) 1181
FauI CCCGC 1 cut(s) 501
FblI GTMKAC 2 cut(s) 705, 846
Fnu4HI GCNGC 3 cut(s) 378, 804, 947
FokI GGATG 7 cut(s) 289, 575, 804, 1238, 1369, 1477, 1509
FriOI GRGCYC 2 cut(s) 337, 1040
Fsp4HI GCNGC 3 cut(s) 378, 804, 947
FspBI CTAG 1 cut(s) 960
GlaI GCGC 1 cut(s) 572
GluI GCNGC 3 cut(s) 378, 804, 947
GsaI CCCAGC 1 cut(s) 429
HaeIII GGCC 9 cut(s) 474, 782, 815, 1028, 1038, 1047, 1052, 1230, 1381
HapII CCGG 5 cut(s) 113, 633, 662, 771, 1049
HgaI GACGC 2 cut(s) 863, 952
HhaI GCGC 1 cut(s) 573
Hin1I GRCGYC 1 cut(s) 855
Hin6I GCGC 1 cut(s) 571
HinP1I GCGC 1 cut(s) 571
HincII GTYRAC 1 cut(s) 847
HindII GTYRAC 1 cut(s) 847
HinfI GANTC 3 cut(s) 523, 793, 848
HpaII CCGG 5 cut(s) 113, 633, 662, 771, 1049
HphI GGTGA 7 cut(s) 442, 584, 623, 856, 952, 1234, 1318
Hpy166II GTNNAC 4 cut(s) 592, 706, 847, 1177
Hpy188I TCNGA 3 cut(s) 800, 853, 1114
Hpy188III TCNNGA 5 cut(s) 694, 755, 821, 982, 1526
Hpy8I GTNNAC 4 cut(s) 592, 706, 847, 1177
Hpy99I CGWCG 2 cut(s) 508, 518
HpyCH4III ACNGT 2 cut(s) 681, 690
HpyCH4IV ACGT 1 cut(s) 506
HpyCH4V TGCA 6 cut(s) 104, 170, 714, 1468, 1487, 1522
HpyF10VI GCNNNNNNNGC 4 cut(s) 383, 812, 960, 1044
HpyF3I CTNAG 8 cut(s) 527, 535, 584, 639, 797, 1283, 1299, 1502
HpySE526I ACGT 1 cut(s) 506
Hsp92I GRCGYC 1 cut(s) 855
HspAI GCGC 1 cut(s) 571
Kzo9I GATC 3 cut(s) 670, 834, 904
LmnI GCTCC 1 cut(s) 374
Lsp1109I GCAGC 2 cut(s) 389, 958
LweI GCATC 2 cut(s) 1455, 1531
MaeI CTAG 1 cut(s) 960
MaeII ACGT 1 cut(s) 506
MaeIII GTNAC 3 cut(s) 628, 1387, 1549
MalI GATC 3 cut(s) 672, 836, 906
MboI GATC 3 cut(s) 670, 834, 904
MboII GAAGA 7 cut(s) 176, 179, 182, 185, 286, 355, 743
MflI RGATCY 1 cut(s) 834
MhlI GDGCHC 3 cut(s) 337, 406, 1040
MluCI AATT 2 cut(s) 20, 1195
MlyI GAGTC 1 cut(s) 842
MmeI TCCRAC 2 cut(s) 49, 1436
Mph1103I ATGCAT 1 cut(s) 106
MseI TTAA 3 cut(s) 74, 137, 204
MslI CAYNNNNRTG 2 cut(s) 726, 869
MspI CCGG 5 cut(s) 113, 633, 662, 771, 1049
MspR9I CCNGG 3 cut(s) 662, 1049, 1107
MvaI CCWGG 1 cut(s) 1107
MwoI GCNNNNNNNGC 4 cut(s) 383, 812, 960, 1044
NciI CCSGG 2 cut(s) 662, 1049
NcoI CCATGG 2 cut(s) 381, 807
NdeII GATC 3 cut(s) 670, 834, 904
NlaIV GGNNCC 5 cut(s) 277, 759, 769, 885, 1038
NmuCI GTSAC 1 cut(s) 1387
NsiI ATGCAT 1 cut(s) 106
NspI RCATGY 2 cut(s) 104, 1298
OliI CACNNNNGTG 1 cut(s) 726
PaeI GCATGC 1 cut(s) 1298
PceI AGGCCT 1 cut(s) 1381
PfeI GAWTC 2 cut(s) 523, 793
PinAI ACCGGT 2 cut(s) 632, 770
PkrI GCNGC 3 cut(s) 379, 805, 948
PleI GAGTC 1 cut(s) 842
PpsI GAGTC 1 cut(s) 842
PshAI GACNNNNGTC 1 cut(s) 962
PsiI TTATAA 1 cut(s) 1428
Psp6I CCWGG 1 cut(s) 1105
PspFI CCCAGC 1 cut(s) 425
PspGI CCWGG 1 cut(s) 1105
PspN4I GGNNCC 5 cut(s) 277, 759, 769, 885, 1038
PspOMI GGGCCC 1 cut(s) 1036
PspPI GGNCC 9 cut(s) 473, 757, 780, 814, 1002, 1026, 1036, 1037, 1046
PsuI RGATCY 1 cut(s) 834
RsaI GTAC 7 cut(s) 99, 133, 201, 788, 899, 1193, 1253
RsaNI GTAC 7 cut(s) 98, 132, 200, 787, 898, 1192, 1252
RseI CAYNNNNRTG 2 cut(s) 726, 869
SalI GTCGAC 1 cut(s) 845
SaqAI TTAA 3 cut(s) 74, 137, 204
SatI GCNGC 3 cut(s) 378, 804, 947
Sau3AI GATC 3 cut(s) 670, 834, 904
Sau96I GGNCC 9 cut(s) 473, 757, 780, 814, 1002, 1026, 1036, 1037, 1046
ScaI AGTACT 1 cut(s) 201
SchI GAGTC 1 cut(s) 842
ScrFI CCNGG 3 cut(s) 662, 1049, 1107
SduI GDGCHC 3 cut(s) 337, 406, 1040
SfaNI GCATC 2 cut(s) 1455, 1531
SfiI GGCCNNNNNGGCC 1 cut(s) 1044
SinI GGWCC 2 cut(s) 757, 1002
SmiMI CAYNNNNRTG 2 cut(s) 726, 869
SmlI CTYRAG 2 cut(s) 468, 1088
SmoI CTYRAG 2 cut(s) 468, 1088
SphI GCATGC 1 cut(s) 1298
Sse9I AATT 2 cut(s) 20, 1195
SseBI AGGCCT 1 cut(s) 1381
SsiI CCGC 2 cut(s) 494, 804
SspMI CTAG 1 cut(s) 960
StuI AGGCCT 1 cut(s) 1381
StyD4I CCNGG 3 cut(s) 660, 1047, 1105
StyI CCWWGG 3 cut(s) 381, 807, 1005
TaaI ACNGT 2 cut(s) 681, 690
TaiI ACGT 1 cut(s) 509
TaqI TCGA 3 cut(s) 438, 846, 1017
TasI AATT 2 cut(s) 20, 1195
TatI WGTACW 5 cut(s) 97, 131, 199, 897, 1191
TauI GCSGC 1 cut(s) 806
TfiI GAWTC 2 cut(s) 523, 793
Tru1I TTAA 3 cut(s) 74, 137, 204
Tru9I TTAA 3 cut(s) 74, 137, 204
TscAI CASTG 1 cut(s) 1004
TseFI GTSAC 1 cut(s) 1387
TseI GCWGC 2 cut(s) 377, 946
Tsp45I GTSAC 1 cut(s) 1387
TspDTI ATGAA 5 cut(s) 406, 911, 1003, 1035, 1358
TspRI CASTG 1 cut(s) 1004
VpaK11BI GGWCC 2 cut(s) 757, 1002
XapI RAATTY 1 cut(s) 20
XceI RCATGY 2 cut(s) 104, 1298
XcmI CCANNNNNNNNNTGG 2 cut(s) 828, 1252
XmiI GTMKAC 2 cut(s) 705, 846
XspI CTAG 1 cut(s) 960
ZrmI AGTACT 1 cut(s) 201
Zsp2I ATGCAT 1 cut(s) 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.